Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39837 * 126.45510 * 2 1 4 4 C 1.35455 * 107.85959 * 180.02562 * 3 2 1 5 5 N 1.35526 * 108.87562 * 359.72460 * 4 3 2 6 6 H 0.96999 * 125.67866 * 180.26239 * 5 4 3 7 7 C 1.37656 * 108.64550 * 0.44347 * 5 4 3 8 8 C 1.46674 * 126.23386 * 179.82516 * 7 5 4 9 9 O 1.21701 * 119.99576 * 172.27294 * 8 7 5 10 10 N 1.34770 * 120.00384 * 352.00509 * 8 7 5 11 11 C 1.46500 * 119.99886 * 354.67714 * 10 8 7 12 12 C 1.46497 * 120.00434 * 174.68259 * 10 8 7 13 13 C 1.52999 * 109.47109 * 95.93167 * 12 10 8 14 14 H 1.09000 * 112.96710 * 69.01360 * 13 12 10 15 15 C 1.53949 * 113.77071 * 297.33225 * 13 12 10 16 16 C 1.53948 * 86.28927 * 222.09537 * 15 13 12 17 17 N 1.47578 * 86.11974 * 23.60848 * 16 15 13 18 18 C 1.36936 * 134.49524 * 155.36564 * 17 16 15 19 19 H 1.07999 * 120.00252 * 185.19596 * 18 17 16 20 20 C 1.38816 * 120.00040 * 5.18931 * 18 17 16 21 21 N 1.31622 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00192 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47008 * 90.00096 * 22 20 18 24 24 H 1.48500 * 109.47070 * 210.00325 * 22 20 18 25 25 H 1.48498 * 109.47180 * 330.00286 * 22 20 18 26 26 H 1.09003 * 109.46869 * 270.00042 * 1 2 3 27 27 H 1.08998 * 109.47393 * 30.00009 * 1 2 3 28 28 H 1.09000 * 109.47359 * 150.00235 * 1 2 3 29 29 H 1.07991 * 126.07231 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.55767 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47102 * 85.47036 * 11 10 8 32 32 H 1.08995 * 109.47796 * 205.47213 * 11 10 8 33 33 H 1.09002 * 109.47225 * 325.47355 * 11 10 8 34 34 H 1.08997 * 109.47491 * 215.93671 * 12 10 8 35 35 H 1.09001 * 109.46773 * 335.93310 * 12 10 8 36 36 H 1.09001 * 113.74100 * 336.43431 * 15 13 12 37 37 H 1.08990 * 113.74214 * 107.64118 * 15 13 12 38 38 H 1.09001 * 113.77070 * 137.91516 * 16 15 13 39 39 H 1.09009 * 113.76769 * 269.19368 * 16 15 13 40 40 H 0.96996 * 119.99414 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6284 -0.6624 0.0052 6 1 4.4190 -1.2243 0.0097 7 6 2.3262 -1.1089 -0.0005 8 6 1.8899 -2.5093 -0.0007 9 8 0.7111 -2.7793 0.1357 10 7 2.7936 -3.4967 -0.1573 11 6 4.1928 -3.1705 -0.4436 12 6 2.3769 -4.8964 -0.0414 13 6 2.0917 -5.4607 -1.4346 14 1 2.9909 -5.5723 -2.0405 15 6 0.9349 -4.7549 -2.1651 16 6 0.4881 -6.1606 -2.6059 17 7 1.2248 -6.6551 -1.4266 18 6 1.1388 -7.7732 -0.6406 19 1 1.7595 -7.8644 0.2384 20 6 0.2535 -8.7892 -0.9737 21 7 -0.5027 -8.6781 -2.0452 22 14 0.1356 -10.3141 0.0988 23 1 -0.8917 -10.1017 1.1499 24 1 -0.2462 -11.4797 -0.7383 25 1 1.4510 -10.5730 0.7375 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.0137 2.1548 -0.0004 30 1 4.4972 1.3253 -0.0003 31 1 4.7218 -2.9867 0.4916 32 1 4.6605 -4.0039 -0.9677 33 1 4.2375 -2.2779 -1.0676 34 1 3.1721 -5.4746 0.4291 35 1 1.4745 -4.9575 0.5671 36 1 0.2305 -4.2601 -1.4965 37 1 1.2592 -4.1176 -2.9877 38 1 -0.5890 -6.3174 -2.5486 39 1 0.9142 -6.4788 -3.5575 40 1 -1.1216 -9.3880 -2.2777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085573943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = 87.448270 kcal Electronic energy + Delta-G solvation = -21932.144557 eV Core-core repulsion = 18750.611008 eV Total energy + Delta-G solvation = -3181.533549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53410 -39.22051 -37.49162 -35.49897 -32.52746 -32.08445 -30.25119 -28.18390 -27.74951 -27.54519 -25.86351 -23.26025 -22.90017 -21.35600 -20.63569 -18.98663 -18.89504 -17.55507 -16.66625 -16.14944 -15.77479 -15.47637 -14.69972 -14.40302 -13.93169 -13.84895 -13.58455 -13.43916 -13.12647 -12.91141 -12.59733 -12.46200 -12.31533 -12.20123 -11.84833 -11.53245 -11.32885 -10.96858 -10.82660 -10.65182 -10.38679 -9.84737 -9.68765 -9.60725 -9.42575 -8.83206 -8.73428 -8.43833 -8.11937 -6.78959 -5.69815 -3.01551 1.51220 2.67731 2.96673 3.18434 3.43193 3.47349 3.49450 3.52007 4.51152 4.61511 4.79351 4.89620 5.04318 5.14974 5.24078 5.29863 5.42239 5.50231 5.61249 5.73963 5.86625 5.94090 5.95726 5.98592 6.13658 6.16640 6.39776 6.42893 6.58549 6.65808 6.76105 6.82073 6.88444 6.95141 7.28959 7.35370 7.52226 7.61604 7.68682 8.06047 8.37892 9.11382 9.78078 10.69590 11.47812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.004167 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.705325 B = 6717.660173 C = 6970.134271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.079 4.079 3 C -0.212 4.212 4 C 0.011 3.989 5 N -0.548 5.548 6 H 0.419 0.581 7 C -0.050 4.050 8 C 0.584 3.416 9 O -0.511 6.511 10 N -0.611 5.611 11 C 0.062 3.938 12 C 0.118 3.882 13 C 0.127 3.873 14 H 0.039 0.961 15 C -0.159 4.159 16 C 0.164 3.836 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 18.975 2.901 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.237 4.237 4 C -0.124 4.124 5 N -0.152 5.152 6 H 0.264 0.736 7 C -0.163 4.163 8 C 0.372 3.628 9 O -0.386 6.386 10 N -0.344 5.344 11 C -0.082 4.082 12 C -0.005 4.005 13 C 0.019 3.981 14 H 0.056 0.944 15 C -0.197 4.197 16 C 0.039 3.961 17 N -0.325 5.325 18 C -0.351 4.351 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.208 1.208 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.347 18.310 3.068 21.254 hybrid contribution 0.769 -1.144 0.409 1.437 sum 11.115 17.166 3.477 20.744 Atomic orbital electron populations 1.20315 0.89299 1.02757 1.02190 1.19963 0.95922 0.90745 1.02075 1.20785 0.91906 0.98671 1.12296 1.22002 0.99433 0.83536 1.07465 1.43049 1.07728 1.07301 1.57082 0.73574 1.20364 0.83552 0.93833 1.18506 1.17079 0.85708 0.82774 0.77205 1.90842 1.15875 1.82574 1.49322 1.47693 1.08063 1.07281 1.71396 1.22076 0.83314 1.02635 1.00184 1.21860 1.01292 0.77822 0.99535 1.22507 0.93982 0.88360 0.93233 0.94409 1.23858 0.98849 0.97741 0.99244 1.22108 0.98121 0.86657 0.89198 1.45949 1.35326 1.19601 1.31660 1.18976 1.19200 0.93546 1.03390 0.90456 1.24788 0.99530 0.98257 0.97756 1.69845 1.26989 1.33598 1.26160 0.86168 0.77686 0.82800 0.79383 1.21528 1.21709 1.20782 0.91567 0.92246 0.90138 0.84260 0.81514 0.92772 0.89538 0.91238 0.91515 0.88621 0.89165 0.94139 0.91560 0.95788 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.76 36.01 0.35 -0.80 16 2 C -0.08 -1.05 6.21 -104.16 -0.65 -1.70 16 3 C -0.21 -2.23 10.76 -39.98 -0.43 -2.66 16 4 C 0.01 0.10 11.89 -16.91 -0.20 -0.10 16 5 N -0.55 -5.35 5.05 -9.39 -0.05 -5.39 16 6 H 0.42 2.98 4.95 -40.82 -0.20 2.78 16 7 C -0.05 -0.69 6.63 -81.98 -0.54 -1.23 16 8 C 0.58 9.63 7.22 -12.86 -0.09 9.53 16 9 O -0.51 -10.25 12.52 5.19 0.06 -10.18 16 10 N -0.61 -9.07 2.76 -183.13 -0.51 -9.57 16 11 C 0.06 0.60 8.85 59.85 0.53 1.13 16 12 C 0.12 2.15 5.38 -4.04 -0.02 2.13 16 13 C 0.13 2.67 4.60 -66.86 -0.31 2.37 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.16 -3.39 7.20 -25.80 -0.19 -3.58 16 16 C 0.16 4.16 7.39 -2.98 -0.02 4.14 16 17 N -0.60 -15.81 3.57 -170.72 -0.61 -16.42 16 18 C -0.22 -6.36 10.51 -15.06 -0.16 -6.52 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -28.12 11.52 55.49 0.64 -27.49 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.23 6.66 -51.93 -0.35 0.88 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.05 0.40 7.56 -51.93 -0.39 0.01 16 32 H 0.09 0.79 8.04 -51.93 -0.42 0.38 16 33 H 0.07 0.58 5.48 -51.93 -0.28 0.30 16 34 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.10 2.05 7.33 -51.93 -0.38 1.67 16 36 H 0.09 2.07 6.21 -51.93 -0.32 1.74 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.84 7.40 -51.93 -0.38 1.46 16 39 H 0.02 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -34.70 322.91 -8.10 -42.79 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.66 Total: 1.40 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.82 Total: 2.43 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.52 Total: -58.87 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.70 -8.10 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085573943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.242 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds