Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39837 * 126.45510 * 2 1 4 4 C 1.35455 * 107.85959 * 180.02562 * 3 2 1 5 5 N 1.35526 * 108.87562 * 359.72460 * 4 3 2 6 6 H 0.96999 * 125.67866 * 180.26239 * 5 4 3 7 7 C 1.37656 * 108.64550 * 0.44347 * 5 4 3 8 8 C 1.46674 * 126.23386 * 179.82516 * 7 5 4 9 9 O 1.21701 * 119.99576 * 172.27294 * 8 7 5 10 10 N 1.34770 * 120.00384 * 352.00509 * 8 7 5 11 11 C 1.46500 * 119.99886 * 354.67714 * 10 8 7 12 12 C 1.46497 * 120.00434 * 174.68259 * 10 8 7 13 13 C 1.52999 * 109.47109 * 95.93167 * 12 10 8 14 14 H 1.09000 * 112.96710 * 69.01360 * 13 12 10 15 15 C 1.53949 * 113.77071 * 297.33225 * 13 12 10 16 16 C 1.53948 * 86.28927 * 222.09537 * 15 13 12 17 17 N 1.47578 * 86.11974 * 23.60848 * 16 15 13 18 18 C 1.36936 * 134.49524 * 155.36564 * 17 16 15 19 19 H 1.07999 * 120.00252 * 185.19596 * 18 17 16 20 20 C 1.38816 * 120.00040 * 5.18931 * 18 17 16 21 21 N 1.31622 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00192 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47008 * 90.00096 * 22 20 18 24 24 H 1.48500 * 109.47070 * 210.00325 * 22 20 18 25 25 H 1.48498 * 109.47180 * 330.00286 * 22 20 18 26 26 H 1.09003 * 109.46869 * 270.00042 * 1 2 3 27 27 H 1.08998 * 109.47393 * 30.00009 * 1 2 3 28 28 H 1.09000 * 109.47359 * 150.00235 * 1 2 3 29 29 H 1.07991 * 126.07231 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.55767 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47102 * 85.47036 * 11 10 8 32 32 H 1.08995 * 109.47796 * 205.47213 * 11 10 8 33 33 H 1.09002 * 109.47225 * 325.47355 * 11 10 8 34 34 H 1.08997 * 109.47491 * 215.93671 * 12 10 8 35 35 H 1.09001 * 109.46773 * 335.93310 * 12 10 8 36 36 H 1.09001 * 113.74100 * 336.43431 * 15 13 12 37 37 H 1.08990 * 113.74214 * 107.64118 * 15 13 12 38 38 H 1.09001 * 113.77070 * 137.91516 * 16 15 13 39 39 H 1.09009 * 113.76769 * 269.19368 * 16 15 13 40 40 H 0.96996 * 119.99414 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6284 -0.6624 0.0052 6 1 4.4190 -1.2243 0.0097 7 6 2.3262 -1.1089 -0.0005 8 6 1.8899 -2.5093 -0.0007 9 8 0.7111 -2.7793 0.1357 10 7 2.7936 -3.4967 -0.1573 11 6 4.1928 -3.1705 -0.4436 12 6 2.3769 -4.8964 -0.0414 13 6 2.0917 -5.4607 -1.4346 14 1 2.9909 -5.5723 -2.0405 15 6 0.9349 -4.7549 -2.1651 16 6 0.4881 -6.1606 -2.6059 17 7 1.2248 -6.6551 -1.4266 18 6 1.1388 -7.7732 -0.6406 19 1 1.7595 -7.8644 0.2384 20 6 0.2535 -8.7892 -0.9737 21 7 -0.5027 -8.6781 -2.0452 22 14 0.1356 -10.3141 0.0988 23 1 -0.8917 -10.1017 1.1499 24 1 -0.2462 -11.4797 -0.7383 25 1 1.4510 -10.5730 0.7375 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.0137 2.1548 -0.0004 30 1 4.4972 1.3253 -0.0003 31 1 4.7218 -2.9867 0.4916 32 1 4.6605 -4.0039 -0.9677 33 1 4.2375 -2.2779 -1.0676 34 1 3.1721 -5.4746 0.4291 35 1 1.4745 -4.9575 0.5671 36 1 0.2305 -4.2601 -1.4965 37 1 1.2592 -4.1176 -2.9877 38 1 -0.5890 -6.3174 -2.5486 39 1 0.9142 -6.4788 -3.5575 40 1 -1.1216 -9.3880 -2.2777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085573943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = 64.531113 kcal Electronic energy + Delta-G solvation = -21933.138320 eV Core-core repulsion = 18750.611008 eV Total energy + Delta-G solvation = -3182.527311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42883 -40.55161 -39.18623 -36.72504 -34.25898 -33.42278 -31.34199 -29.85219 -29.37307 -28.53630 -26.91937 -25.30692 -24.46106 -22.39140 -21.67898 -20.80963 -19.88848 -18.72081 -18.48361 -17.40423 -17.14787 -16.60809 -16.52091 -15.88930 -15.59081 -14.81969 -14.74451 -14.65407 -14.29198 -14.15155 -13.86806 -13.76684 -13.55663 -13.35741 -13.12505 -12.95539 -12.87520 -12.59976 -12.51996 -12.44865 -12.26361 -11.83626 -11.60562 -11.29285 -10.90805 -10.85539 -9.79338 -9.59841 -9.05601 -8.87991 -7.89576 -5.22767 0.53481 1.43596 1.47197 1.54784 1.85715 1.89470 2.31133 2.43929 2.50112 3.30667 3.40977 3.66364 3.91544 4.03628 4.18276 4.26089 4.29578 4.31637 4.40903 4.44792 4.52359 4.70319 4.73798 4.82853 4.90482 4.91309 5.00132 5.05941 5.07908 5.19286 5.22250 5.44564 5.49668 5.52321 5.73297 5.84650 5.93704 6.03864 6.42321 6.63612 6.91333 7.18751 7.61849 8.58694 9.28731 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.004167 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.705325 B = 6717.660173 C = 6970.134271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.097 4.097 3 C -0.230 4.230 4 C 0.045 3.955 5 N -0.535 5.535 6 H 0.432 0.568 7 C -0.083 4.083 8 C 0.576 3.424 9 O -0.564 6.564 10 N -0.609 5.609 11 C 0.053 3.947 12 C 0.133 3.867 13 C 0.136 3.864 14 H 0.061 0.939 15 C -0.135 4.135 16 C 0.160 3.840 17 N -0.627 5.627 18 C -0.229 4.229 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.958 5.958 22 Si 0.979 3.021 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.263 1.263 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.160 0.840 30 H 0.217 0.783 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.021 0.979 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.611 21.034 3.650 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.254 4.254 4 C -0.092 4.092 5 N -0.139 5.139 6 H 0.280 0.720 7 C -0.195 4.195 8 C 0.367 3.633 9 O -0.443 6.443 10 N -0.341 5.341 11 C -0.089 4.089 12 C 0.008 3.992 13 C 0.029 3.971 14 H 0.078 0.922 15 C -0.173 4.173 16 C 0.034 3.966 17 N -0.354 5.354 18 C -0.358 4.358 19 H 0.106 0.894 20 C -0.264 4.264 21 N -0.607 5.607 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.188 1.188 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.177 0.823 30 H 0.234 0.766 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.060 20.394 3.827 25.065 hybrid contribution -0.299 -1.615 0.164 1.651 sum 13.762 18.779 3.991 23.621 Atomic orbital electron populations 1.20253 0.90224 1.02155 1.01762 1.20248 0.95979 0.92160 1.02250 1.21093 0.92333 0.98848 1.13086 1.22781 1.00338 0.83046 1.03048 1.43011 1.06671 1.08068 1.56188 0.71990 1.19930 0.85547 0.92180 1.21831 1.17564 0.85225 0.84154 0.76333 1.90815 1.18155 1.83526 1.51792 1.47682 1.10121 1.05337 1.70997 1.22430 0.80257 1.03851 1.02356 1.21401 1.00467 0.80269 0.97016 1.22663 0.93788 0.85588 0.95061 0.92161 1.23557 0.98524 0.95750 0.99453 1.22024 0.95980 0.89388 0.89210 1.46269 1.37046 1.20428 1.31641 1.19434 1.18590 0.93926 1.03800 0.89400 1.25686 0.99719 1.01612 0.99417 1.70049 1.28058 1.34326 1.28254 0.85072 0.78206 0.78627 0.77402 1.21648 1.22145 1.18760 0.91982 0.90165 0.93299 0.82285 0.76627 0.89659 0.88495 0.89538 0.89483 0.92598 0.91082 0.91451 0.95311 0.96168 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 9.76 71.24 0.70 -1.63 16 2 C -0.10 -2.49 6.21 -19.56 -0.12 -2.61 16 3 C -0.23 -4.07 10.76 22.01 0.24 -3.83 16 4 C 0.04 0.54 11.89 83.48 0.99 1.54 16 5 N -0.53 -8.31 5.05 -183.62 -0.93 -9.23 16 6 H 0.43 4.07 4.95 -92.71 -0.46 3.61 16 7 C -0.08 -2.15 6.63 40.35 0.27 -1.88 16 8 C 0.58 19.03 7.22 86.45 0.62 19.66 16 9 O -0.56 -23.90 12.52 -4.35 -0.05 -23.96 16 10 N -0.61 -17.23 2.76 -851.53 -2.35 -19.58 16 11 C 0.05 0.83 8.85 127.77 1.13 1.96 16 12 C 0.13 4.78 5.38 86.38 0.46 5.25 16 13 C 0.14 5.64 4.60 45.09 0.21 5.84 16 14 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.13 -5.86 7.20 31.26 0.23 -5.63 16 16 C 0.16 8.41 7.39 86.48 0.64 9.05 16 17 N -0.63 -33.77 3.57 -694.04 -2.48 -36.25 16 18 C -0.23 -13.23 10.51 84.03 0.88 -12.35 16 19 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 21 N -0.96 -60.87 11.52 21.65 0.25 -60.62 16 22 Si 0.98 47.31 29.55 68.60 2.03 49.33 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.61 6.66 -2.39 -0.02 1.59 16 29 H 0.16 2.09 8.06 -2.92 -0.02 2.07 16 30 H 0.22 0.49 8.06 -2.91 -0.02 0.46 16 31 H 0.09 0.85 7.56 -2.39 -0.02 0.83 16 32 H 0.10 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.09 1.08 5.48 -2.39 -0.01 1.07 16 34 H 0.09 2.77 8.12 -2.39 -0.02 2.75 16 35 H 0.06 2.48 7.33 -2.39 -0.02 2.46 16 36 H 0.07 3.42 6.21 -2.39 -0.01 3.40 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.03 1.70 7.40 -2.39 -0.02 1.68 16 39 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.73 322.91 3.77 -76.97 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.59 Total: 11.78 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.71 Total: 11.56 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -5.51 Total: -125.68 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -80.73 3.77 -76.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085573943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.496 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds