Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34493 * 126.83089 * 2 1 4 4 N 1.36450 * 108.85460 * 180.26462 * 3 2 1 5 5 H 0.97000 * 124.85055 * 179.68888 * 4 3 2 6 6 C 1.34657 * 110.29797 * 359.72047 * 4 3 2 7 7 C 1.36767 * 108.39852 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94214 * 180.02562 * 7 6 4 9 9 O 1.21631 * 119.99999 * 186.85082 * 8 7 6 10 10 N 1.34774 * 119.99981 * 6.85789 * 8 7 6 11 11 C 1.46498 * 120.00369 * 5.53312 * 10 8 7 12 12 C 1.46505 * 119.99877 * 185.54169 * 10 8 7 13 13 C 1.52996 * 109.47579 * 97.17355 * 12 10 8 14 14 H 1.08998 * 112.96412 * 49.85679 * 13 12 10 15 15 C 1.53946 * 113.77224 * 181.53737 * 13 12 10 16 16 C 1.53948 * 86.29039 * 137.90273 * 15 13 12 17 17 N 1.47577 * 86.24181 * 336.33970 * 16 15 13 18 18 C 1.36940 * 134.49357 * 204.69388 * 17 16 15 19 19 H 1.08006 * 119.99661 * 58.60672 * 18 17 16 20 20 C 1.38809 * 119.99951 * 238.61190 * 18 17 16 21 21 N 1.31618 * 119.99580 * 187.43473 * 20 18 17 22 22 Si 1.86795 * 120.00203 * 7.43931 * 20 18 17 23 23 H 1.48497 * 109.47179 * 94.38282 * 22 20 18 24 24 H 1.48509 * 109.46975 * 214.38286 * 22 20 18 25 25 H 1.48503 * 109.46929 * 334.37998 * 22 20 18 26 26 H 1.09001 * 109.46775 * 270.19789 * 1 2 3 27 27 H 1.08997 * 109.47826 * 30.19917 * 1 2 3 28 28 H 1.09004 * 109.46860 * 150.20410 * 1 2 3 29 29 H 1.08002 * 125.56913 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80330 * 180.02562 * 6 4 3 31 31 H 1.08998 * 109.47537 * 276.24970 * 11 10 8 32 32 H 1.09002 * 109.46677 * 36.24370 * 11 10 8 33 33 H 1.09001 * 109.47186 * 156.24350 * 11 10 8 34 34 H 1.08997 * 109.46808 * 337.16569 * 12 10 8 35 35 H 1.09005 * 109.46523 * 217.17600 * 12 10 8 36 36 H 1.09005 * 113.73972 * 23.56121 * 15 13 12 37 37 H 1.08997 * 113.74192 * 252.25161 * 15 13 12 38 38 H 1.09005 * 113.76251 * 90.69679 * 16 15 13 39 39 H 1.08994 * 113.76980 * 221.97909 * 16 15 13 40 40 H 0.97002 * 120.00121 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0060 5 1 4.3839 1.2415 -0.0115 6 6 3.6656 -0.6901 -0.0037 7 6 2.3865 -1.1740 0.0044 8 6 1.9751 -2.5879 0.0099 9 8 0.8003 -2.8800 -0.1086 10 7 2.9003 -3.5584 0.1465 11 6 4.2976 -3.2064 0.4106 12 6 2.5087 -4.9653 0.0306 13 6 2.7978 -5.4601 -1.3880 14 1 3.8087 -5.2264 -1.7222 15 6 2.3870 -6.9238 -1.6305 16 6 1.8482 -6.4425 -2.9900 17 7 1.7470 -5.1081 -2.3680 18 6 0.9854 -3.9946 -2.6036 19 1 -0.0920 -4.0596 -2.5664 20 6 1.5983 -2.7826 -2.8904 21 7 0.8779 -1.6841 -2.9723 22 14 3.4452 -2.7106 -3.1603 23 1 3.7376 -2.8126 -4.6126 24 1 3.9720 -1.4239 -2.6384 25 1 4.0944 -3.8381 -2.4442 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8881 -0.5169 28 1 -0.3633 -0.8919 -0.5107 29 1 1.9866 2.1060 -0.0004 30 1 4.5664 -1.2859 -0.0069 31 1 4.7990 -2.9785 -0.5300 32 1 4.3354 -2.3340 1.0630 33 1 4.7981 -4.0446 0.8954 34 1 1.4436 -5.0644 0.2400 35 1 3.0765 -5.5605 0.7458 36 1 1.6115 -7.2800 -0.9524 37 1 3.2309 -7.6090 -1.7105 38 1 2.5795 -6.4970 -3.7965 39 1 0.8851 -6.8760 -3.2592 40 1 1.3061 -0.8371 -3.1724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085970654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = 106.726878 kcal Electronic energy + Delta-G solvation = -23625.137089 eV Core-core repulsion = 20444.439523 eV Total energy + Delta-G solvation = -3180.697566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65209 -38.70095 -37.23845 -34.52199 -32.01731 -31.67943 -30.07990 -28.20162 -27.47825 -26.30475 -25.59269 -22.97332 -22.69023 -20.93692 -19.53830 -19.18796 -18.09325 -17.09149 -16.39989 -15.54602 -15.36636 -14.91640 -14.67859 -13.89430 -13.60296 -13.35204 -13.22265 -12.93059 -12.57592 -12.29363 -12.13677 -11.97285 -11.88635 -11.67373 -11.62695 -11.26898 -11.18415 -10.72084 -10.59916 -10.50958 -10.02116 -9.91298 -9.55345 -9.29914 -8.53791 -8.12568 -7.85034 -7.67631 -7.57381 -6.14212 -5.66466 -3.33119 2.52007 3.09727 3.44148 3.53519 3.57633 3.68049 3.96887 4.63017 4.74526 5.04008 5.32592 5.42463 5.50342 5.52053 5.65627 5.71417 5.75750 5.92275 5.93303 5.99674 6.12621 6.21000 6.26795 6.40617 6.45139 6.50341 6.59700 6.62380 6.75178 6.80299 6.88824 7.14631 7.28970 7.51298 7.53067 7.62332 7.97469 8.19964 8.46248 8.59527 9.12197 9.55894 9.94895 10.79594 11.46245 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.008944 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.401376 B = 3129.783792 C = 3322.123350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.083 4.083 3 C -0.048 4.048 4 N -0.559 5.559 5 H 0.407 0.593 6 C 0.001 3.999 7 C -0.188 4.188 8 C 0.587 3.413 9 O -0.477 6.477 10 N -0.620 5.620 11 C 0.070 3.930 12 C 0.129 3.871 13 C 0.101 3.899 14 H 0.055 0.945 15 C -0.148 4.148 16 C 0.100 3.900 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.069 0.931 20 C 0.068 3.932 21 N -0.872 5.872 22 Si 0.851 3.149 23 H -0.304 1.304 24 H -0.293 1.293 25 H -0.247 1.247 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.176 0.824 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.027 0.973 39 H 0.045 0.955 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 1.294 8.629 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.175 4.175 4 N -0.154 5.154 5 H 0.242 0.758 6 C -0.132 4.132 7 C -0.199 4.199 8 C 0.375 3.625 9 O -0.348 6.348 10 N -0.357 5.357 11 C -0.074 4.074 12 C 0.006 3.994 13 C -0.005 4.005 14 H 0.072 0.928 15 C -0.186 4.186 16 C -0.024 4.024 17 N -0.330 5.330 18 C -0.356 4.356 19 H 0.087 0.913 20 C -0.136 4.136 21 N -0.510 5.510 22 Si 0.682 3.318 23 H -0.232 1.232 24 H -0.220 1.220 25 H -0.172 1.172 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.252 1.642 8.502 11.961 hybrid contribution 1.947 0.657 -0.621 2.147 sum 10.199 2.299 7.880 13.092 Atomic orbital electron populations 1.20193 0.89509 1.03980 1.00144 1.20464 0.95592 0.90088 1.02812 1.21431 0.82702 0.98813 1.14547 1.41394 1.07765 1.06604 1.59662 0.75774 1.22826 0.99529 0.83663 1.07217 1.20475 0.91907 0.93658 1.13876 1.17045 0.85391 0.83295 0.76753 1.90770 1.16756 1.82348 1.44950 1.47438 1.07273 1.06580 1.74375 1.22155 0.84191 1.01224 0.99814 1.21586 1.01935 0.79956 0.95956 1.23367 0.94774 0.91158 0.91205 0.92779 1.23557 0.99706 0.96073 0.99305 1.22760 0.97337 0.89009 0.93294 1.46105 1.42679 1.12682 1.31563 1.18158 0.89479 0.84010 1.43990 0.91335 1.25840 0.96187 0.96319 0.95267 1.69752 1.34796 0.98139 1.48293 0.87372 0.89573 0.77436 0.77409 1.23220 1.21955 1.17223 0.93473 0.93355 0.88001 0.82376 0.80754 0.93897 0.90883 0.91669 0.89069 0.92619 0.90587 0.93229 0.95499 0.93696 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.04 36.00 0.36 -1.30 16 2 C -0.08 -1.70 6.35 -102.54 -0.65 -2.35 16 3 C -0.05 -0.80 11.82 -16.82 -0.20 -1.00 16 4 N -0.56 -8.33 5.90 -12.84 -0.08 -8.40 16 5 H 0.41 4.29 8.96 -40.82 -0.37 3.93 16 6 C 0.00 0.02 8.98 -16.84 -0.15 -0.13 16 7 C -0.19 -4.02 5.54 -103.35 -0.57 -4.60 16 8 C 0.59 13.75 4.48 -12.60 -0.06 13.69 16 9 O -0.48 -13.01 12.33 5.25 0.06 -12.94 16 10 N -0.62 -12.57 2.07 -182.91 -0.38 -12.95 16 11 C 0.07 1.09 8.52 59.85 0.51 1.60 16 12 C 0.13 2.55 5.42 -4.04 -0.02 2.53 16 13 C 0.10 2.13 3.14 -66.67 -0.21 1.92 16 14 H 0.06 1.20 5.76 -51.93 -0.30 0.90 16 15 C -0.15 -2.65 7.86 -25.79 -0.20 -2.86 16 16 C 0.10 2.13 8.92 -2.98 -0.03 2.11 16 17 N -0.60 -15.21 2.56 -169.64 -0.43 -15.64 16 18 C -0.23 -6.72 8.67 -15.06 -0.13 -6.85 16 19 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 20 C 0.07 1.99 3.37 -17.43 -0.06 1.93 16 21 N -0.87 -26.39 13.97 55.49 0.78 -25.61 16 22 Si 0.85 22.27 23.83 -169.99 -4.05 18.22 16 23 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 24 H -0.29 -7.49 6.46 56.52 0.37 -7.12 16 25 H -0.25 -6.00 3.72 56.52 0.21 -5.79 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.10 2.56 6.76 -51.93 -0.35 2.21 16 29 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.18 2.64 4.40 -52.49 -0.23 2.41 16 31 H 0.04 0.71 5.57 -51.93 -0.29 0.42 16 32 H 0.07 1.01 5.33 -51.93 -0.28 0.73 16 33 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.09 2.05 7.16 -51.93 -0.37 1.67 16 35 H 0.06 0.88 7.98 -51.93 -0.41 0.47 16 36 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -35.61 304.13 -6.68 -42.29 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.75 Total: 5.76 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.41 Total: 4.70 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.11 Total: -62.61 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.06 Total: -12.94 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.05 Total: 18.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.61 -6.68 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085970654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.013 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds