Wall clock time and date at job start Mon Mar 30 2020 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34493 * 126.83089 * 2 1 4 4 N 1.36450 * 108.85460 * 180.26462 * 3 2 1 5 5 H 0.97000 * 124.85055 * 179.68888 * 4 3 2 6 6 C 1.34657 * 110.29797 * 359.72047 * 4 3 2 7 7 C 1.36767 * 108.39852 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94214 * 180.02562 * 7 6 4 9 9 O 1.21631 * 119.99999 * 186.85082 * 8 7 6 10 10 N 1.34774 * 119.99981 * 6.85789 * 8 7 6 11 11 C 1.46498 * 120.00369 * 5.53312 * 10 8 7 12 12 C 1.46505 * 119.99877 * 185.54169 * 10 8 7 13 13 C 1.52996 * 109.47579 * 97.17355 * 12 10 8 14 14 H 1.08998 * 112.96412 * 49.85679 * 13 12 10 15 15 C 1.53946 * 113.77224 * 181.53737 * 13 12 10 16 16 C 1.53948 * 86.29039 * 137.90273 * 15 13 12 17 17 N 1.47577 * 86.24181 * 336.33970 * 16 15 13 18 18 C 1.36940 * 134.49357 * 204.69388 * 17 16 15 19 19 H 1.08006 * 119.99661 * 58.60672 * 18 17 16 20 20 C 1.38809 * 119.99951 * 238.61190 * 18 17 16 21 21 N 1.31618 * 119.99580 * 187.43473 * 20 18 17 22 22 Si 1.86795 * 120.00203 * 7.43931 * 20 18 17 23 23 H 1.48497 * 109.47179 * 94.38282 * 22 20 18 24 24 H 1.48509 * 109.46975 * 214.38286 * 22 20 18 25 25 H 1.48503 * 109.46929 * 334.37998 * 22 20 18 26 26 H 1.09001 * 109.46775 * 270.19789 * 1 2 3 27 27 H 1.08997 * 109.47826 * 30.19917 * 1 2 3 28 28 H 1.09004 * 109.46860 * 150.20410 * 1 2 3 29 29 H 1.08002 * 125.56913 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80330 * 180.02562 * 6 4 3 31 31 H 1.08998 * 109.47537 * 276.24970 * 11 10 8 32 32 H 1.09002 * 109.46677 * 36.24370 * 11 10 8 33 33 H 1.09001 * 109.47186 * 156.24350 * 11 10 8 34 34 H 1.08997 * 109.46808 * 337.16569 * 12 10 8 35 35 H 1.09005 * 109.46523 * 217.17600 * 12 10 8 36 36 H 1.09005 * 113.73972 * 23.56121 * 15 13 12 37 37 H 1.08997 * 113.74192 * 252.25161 * 15 13 12 38 38 H 1.09005 * 113.76251 * 90.69679 * 16 15 13 39 39 H 1.08994 * 113.76980 * 221.97909 * 16 15 13 40 40 H 0.97002 * 120.00121 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0060 5 1 4.3839 1.2415 -0.0115 6 6 3.6656 -0.6901 -0.0037 7 6 2.3865 -1.1740 0.0044 8 6 1.9751 -2.5879 0.0099 9 8 0.8003 -2.8800 -0.1086 10 7 2.9003 -3.5584 0.1465 11 6 4.2976 -3.2064 0.4106 12 6 2.5087 -4.9653 0.0306 13 6 2.7978 -5.4601 -1.3880 14 1 3.8087 -5.2264 -1.7222 15 6 2.3870 -6.9238 -1.6305 16 6 1.8482 -6.4425 -2.9900 17 7 1.7470 -5.1081 -2.3680 18 6 0.9854 -3.9946 -2.6036 19 1 -0.0920 -4.0596 -2.5664 20 6 1.5983 -2.7826 -2.8904 21 7 0.8779 -1.6841 -2.9723 22 14 3.4452 -2.7106 -3.1603 23 1 3.7376 -2.8126 -4.6126 24 1 3.9720 -1.4239 -2.6384 25 1 4.0944 -3.8381 -2.4442 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8881 -0.5169 28 1 -0.3633 -0.8919 -0.5107 29 1 1.9866 2.1060 -0.0004 30 1 4.5664 -1.2859 -0.0069 31 1 4.7990 -2.9785 -0.5300 32 1 4.3354 -2.3340 1.0630 33 1 4.7981 -4.0446 0.8954 34 1 1.4436 -5.0644 0.2400 35 1 3.0765 -5.5605 0.7458 36 1 1.6115 -7.2800 -0.9524 37 1 3.2309 -7.6090 -1.7105 38 1 2.5795 -6.4970 -3.7965 39 1 0.8851 -6.8760 -3.2592 40 1 1.3061 -0.8371 -3.1724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085970654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:46 Heat of formation + Delta-G solvation = 80.210382 kcal Electronic energy + Delta-G solvation = -23626.286930 eV Core-core repulsion = 20444.439523 eV Total energy + Delta-G solvation = -3181.847407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02627 -40.32428 -38.93571 -36.13904 -34.17770 -33.14628 -31.56581 -30.13923 -28.97788 -27.76984 -27.03649 -24.70216 -24.53131 -22.39842 -21.00585 -20.93417 -19.54098 -18.51489 -18.35445 -17.31768 -16.92582 -16.46400 -16.43950 -15.36538 -15.31199 -14.91055 -14.78870 -14.66322 -14.23017 -13.98248 -13.77453 -13.67018 -13.44770 -13.35466 -13.15598 -13.03494 -12.62940 -12.49867 -12.25873 -12.05650 -11.79707 -11.63444 -11.45381 -11.18604 -10.38678 -10.18754 -9.35693 -9.15934 -8.99754 -8.15850 -7.84736 -5.55866 1.08031 1.33813 1.38036 1.51960 1.67558 2.35627 2.58303 2.64001 3.03218 3.27978 3.42114 3.99252 4.05374 4.19164 4.34037 4.35104 4.40479 4.51950 4.55174 4.64293 4.69755 4.78924 4.82455 4.84251 4.93026 4.96584 5.07173 5.10536 5.11259 5.23345 5.32738 5.56732 5.69565 6.00265 6.08358 6.12567 6.19452 6.47921 6.81653 6.83836 6.93052 7.70523 7.94132 8.68836 9.28855 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.008944 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.401376 B = 3129.783792 C = 3322.123350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.135 4.135 3 C -0.023 4.023 4 N -0.538 5.538 5 H 0.433 0.567 6 C 0.015 3.985 7 C -0.234 4.234 8 C 0.578 3.422 9 O -0.540 6.540 10 N -0.625 5.625 11 C 0.060 3.940 12 C 0.129 3.871 13 C 0.100 3.900 14 H 0.061 0.939 15 C -0.117 4.117 16 C 0.090 3.910 17 N -0.632 5.632 18 C -0.228 4.228 19 H -0.002 1.002 20 C 0.031 3.969 21 N -0.905 5.905 22 Si 0.909 3.091 23 H -0.326 1.326 24 H -0.280 1.280 25 H -0.214 1.214 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.197 0.803 30 H 0.205 0.795 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.772 1.135 9.914 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.141 4.141 3 C -0.151 4.151 4 N -0.134 5.134 5 H 0.273 0.727 6 C -0.120 4.120 7 C -0.245 4.245 8 C 0.368 3.632 9 O -0.415 6.415 10 N -0.360 5.360 11 C -0.082 4.082 12 C 0.006 3.994 13 C -0.006 4.006 14 H 0.078 0.922 15 C -0.156 4.156 16 C -0.034 4.034 17 N -0.361 5.361 18 C -0.357 4.357 19 H 0.015 0.985 20 C -0.170 4.170 21 N -0.545 5.545 22 Si 0.739 3.261 23 H -0.256 1.256 24 H -0.206 1.206 25 H -0.138 1.138 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.213 0.787 30 H 0.221 0.779 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.073 1.470 9.817 16.415 hybrid contribution 0.387 0.665 -0.991 1.255 sum 13.460 2.135 8.826 16.237 Atomic orbital electron populations 1.19948 0.90955 1.01680 1.00041 1.20655 0.95514 0.91777 1.06184 1.21826 0.82681 0.99389 1.11234 1.41415 1.08270 1.06228 1.57496 0.72693 1.23132 0.98939 0.84764 1.05174 1.20540 0.93928 0.92910 1.17105 1.17552 0.85125 0.84785 0.75688 1.90746 1.19407 1.83396 1.47977 1.47587 1.08925 1.06127 1.73352 1.22459 0.81384 1.03923 1.00424 1.21585 1.00568 0.80808 0.96489 1.23505 0.93265 0.93068 0.90724 0.92192 1.23353 1.00979 0.94894 0.96338 1.22961 0.97764 0.86965 0.95688 1.46306 1.43289 1.12608 1.33925 1.17551 0.87161 0.86384 1.44635 0.98495 1.26249 1.00439 0.95321 0.94984 1.69941 1.36438 0.98397 1.49687 0.86496 0.84603 0.79052 0.75969 1.25572 1.20603 1.13842 0.92582 0.92097 0.93620 0.78656 0.77898 0.94127 0.89083 0.87622 0.93070 0.87510 0.89975 0.88619 0.94337 0.94352 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.00 10.04 71.23 0.71 -2.28 16 2 C -0.13 -5.54 6.35 -18.51 -0.12 -5.66 16 3 C -0.02 -0.71 11.82 83.12 0.98 0.28 16 4 N -0.54 -13.81 5.90 -194.55 -1.15 -14.96 16 5 H 0.43 6.83 8.96 -92.71 -0.83 6.00 16 6 C 0.02 0.49 8.98 83.91 0.75 1.24 16 7 C -0.23 -9.88 5.54 -19.04 -0.11 -9.99 16 8 C 0.58 27.56 4.48 86.62 0.39 27.95 16 9 O -0.54 -31.57 12.33 -4.13 -0.05 -31.62 16 10 N -0.63 -24.22 2.07 -850.85 -1.76 -25.98 16 11 C 0.06 1.59 8.52 127.77 1.09 2.68 16 12 C 0.13 4.85 5.42 86.38 0.47 5.32 16 13 C 0.10 3.94 3.14 45.02 0.14 4.08 16 14 H 0.06 2.35 5.76 -2.39 -0.01 2.34 16 15 C -0.12 -3.80 7.86 31.25 0.25 -3.56 16 16 C 0.09 3.74 8.92 86.48 0.77 4.51 16 17 N -0.63 -32.27 2.56 -690.61 -1.77 -34.04 16 18 C -0.23 -14.25 8.67 84.03 0.73 -13.52 16 19 H 0.00 -0.18 8.06 -2.91 -0.02 -0.21 16 20 C 0.03 1.90 3.37 84.86 0.29 2.18 16 21 N -0.91 -57.91 13.97 21.65 0.30 -57.60 16 22 Si 0.91 45.95 23.83 68.60 1.63 47.59 16 23 H -0.33 -17.60 7.11 99.48 0.71 -16.89 16 24 H -0.28 -13.37 6.46 99.48 0.64 -12.73 16 25 H -0.21 -9.54 3.72 99.48 0.37 -9.17 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 2.51 6.76 -2.38 -0.02 2.49 16 29 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.20 5.13 4.40 -2.91 -0.01 5.12 16 31 H 0.04 1.12 5.57 -2.39 -0.01 1.10 16 32 H 0.09 2.08 5.33 -2.39 -0.01 2.07 16 33 H 0.11 1.96 7.90 -2.39 -0.02 1.94 16 34 H 0.05 2.35 7.16 -2.39 -0.02 2.33 16 35 H 0.11 2.89 7.98 -2.38 -0.02 2.87 16 36 H 0.08 2.59 8.10 -2.38 -0.02 2.57 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -87.92 304.13 3.38 -84.54 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.17 Total: 18.83 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.35 Total: 13.24 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -4.38 Total: -132.58 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.63 Total: 47.59 kcal Total: -87.92 3.38 -84.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085970654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.747 kcal (2) G-P(sol) polarization free energy of solvation -87.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds