Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34493 * 126.83588 * 2 1 4 4 N 1.36445 * 108.85783 * 180.26618 * 3 2 1 5 5 H 0.96997 * 124.84708 * 179.69262 * 4 3 2 6 6 C 1.34656 * 110.29933 * 359.71338 * 4 3 2 7 7 C 1.36771 * 108.39695 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.93985 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99705 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00412 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47156 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.84523 * 43.80460 * 12 11 10 14 14 C 1.53780 * 113.61378 * 175.00176 * 12 11 10 15 15 C 1.53784 * 87.07849 * 140.06535 * 14 12 11 16 16 H 1.08997 * 113.60993 * 89.20502 * 15 14 12 17 17 N 1.46504 * 113.61174 * 220.01651 * 15 14 12 18 18 C 1.36943 * 119.99781 * 205.00320 * 17 15 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 15 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48504 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00078 * 22 20 18 26 26 C 1.53774 * 87.08229 * 334.56543 * 15 14 12 27 27 H 1.08997 * 109.46843 * 270.19687 * 1 2 3 28 28 H 1.08998 * 109.47776 * 30.19925 * 1 2 3 29 29 H 1.09003 * 109.47425 * 150.20042 * 1 2 3 30 30 H 1.08002 * 125.56855 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.80030 * 179.97438 * 6 4 3 32 32 H 0.97001 * 119.99810 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.46989 * 60.00166 * 11 10 8 34 34 H 1.08995 * 109.47537 * 299.99889 * 11 10 8 35 35 H 1.09000 * 113.61564 * 25.52145 * 14 12 11 36 36 H 1.08999 * 113.69309 * 254.62711 * 14 12 11 37 37 H 0.97000 * 120.00410 * 25.00645 * 17 15 14 38 38 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 39 39 H 1.09009 * 113.61213 * 139.98280 * 26 15 14 40 40 H 1.08998 * 113.61955 * 270.87867 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0060 5 1 4.3839 1.2414 -0.0115 6 6 3.6656 -0.6902 -0.0036 7 6 2.3864 -1.1740 0.0035 8 6 1.9750 -2.5880 0.0087 9 8 0.7937 -2.8776 0.0145 10 7 2.9074 -3.5611 0.0072 11 6 2.4981 -4.9678 0.0130 12 6 3.7407 -5.8605 0.0093 13 1 4.5108 -5.5168 0.6998 14 6 3.4226 -7.3596 0.1376 15 6 4.5341 -7.6036 -0.8968 16 1 5.5209 -7.7380 -0.4537 17 7 4.2051 -8.6404 -1.8781 18 6 5.2069 -9.3261 -2.5117 19 1 6.2396 -9.1022 -2.2882 20 6 4.8952 -10.3045 -3.4458 21 7 3.6368 -10.5769 -3.7186 22 14 6.2619 -11.2344 -4.3157 23 1 7.5785 -10.7434 -3.8353 24 1 6.1374 -12.6850 -4.0234 25 1 6.1563 -11.0136 -5.7804 26 6 4.2719 -6.1742 -1.3994 27 1 -0.3633 0.0035 1.0276 28 1 -0.3634 0.8881 -0.5169 29 1 -0.3634 -0.8918 -0.5107 30 1 1.9867 2.1059 -0.0004 31 1 4.5665 -1.2859 -0.0076 32 1 3.8495 -3.3301 0.0031 33 1 1.8992 -5.1756 -0.8737 34 1 1.9073 -5.1707 0.9062 35 1 2.4279 -7.6270 -0.2191 36 1 3.6442 -7.7716 1.1221 37 1 3.2776 -8.8412 -2.0792 38 1 3.4190 -11.2608 -4.3710 39 1 5.1798 -5.6279 -1.6554 40 1 3.5094 -6.1175 -2.1763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086271253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 30.403410 kcal Electronic energy + Delta-G solvation = -20466.422412 eV Core-core repulsion = 17282.415213 eV Total energy + Delta-G solvation = -3184.007200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38064 -39.28475 -38.19127 -34.56163 -33.25597 -32.59436 -30.66276 -29.85164 -27.07300 -26.71106 -25.04814 -23.97341 -22.77265 -21.03226 -20.12583 -19.48407 -18.85000 -18.50090 -17.03158 -16.28560 -15.80158 -15.30220 -14.74831 -14.71533 -14.26319 -14.15823 -13.76461 -13.47835 -13.20682 -13.09326 -12.83167 -12.77005 -12.48448 -11.85496 -11.76912 -11.53461 -11.34480 -11.20538 -10.83980 -10.49370 -10.18530 -10.08934 -9.79603 -9.72593 -9.43841 -9.00374 -8.86010 -8.69803 -8.51091 -6.94328 -5.76877 -3.05604 1.60768 2.20106 2.93618 3.37845 3.43194 3.48429 3.50975 3.59337 4.58835 4.59705 4.80541 4.87769 5.03137 5.05846 5.21512 5.28300 5.42489 5.49069 5.57324 5.60761 5.74707 5.88263 5.90449 5.95281 6.03644 6.12052 6.12459 6.32656 6.37042 6.41075 6.57268 6.59832 6.64906 6.67118 6.87389 7.15126 7.16136 7.68775 7.70589 8.41769 8.43851 9.52760 10.11647 10.45777 11.45641 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.002757 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.598844 B =10153.817174 C =10394.689676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.045 3.955 7 C -0.225 4.225 8 C 0.584 3.416 9 O -0.545 6.545 10 N -0.726 5.726 11 C 0.134 3.866 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.143 4.143 15 C 0.165 3.835 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.160 4.160 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.052 0.948 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 24.326 10.105 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.157 4.157 4 N -0.145 5.145 5 H 0.253 0.747 6 C -0.091 4.091 7 C -0.235 4.235 8 C 0.372 3.628 9 O -0.424 6.424 10 N -0.376 5.376 11 C 0.011 3.989 12 C -0.146 4.146 13 H 0.105 0.895 14 C -0.182 4.182 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.201 4.201 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.003 24.075 10.019 26.076 hybrid contribution 1.362 -0.158 -0.630 1.509 sum 1.365 23.917 9.389 25.730 Atomic orbital electron populations 1.20196 0.89323 1.02652 1.01932 1.20586 0.95696 0.90379 1.04923 1.21573 0.82453 0.99198 1.12459 1.41474 1.08295 1.06687 1.58010 0.74687 1.21941 0.98590 0.83873 1.04699 1.20458 0.92667 0.93021 1.17389 1.17416 0.85484 0.84003 0.75853 1.90746 1.17268 1.83782 1.50577 1.45886 1.09291 1.06522 1.75947 1.21395 0.96803 0.78617 1.02076 1.22631 0.96677 0.95537 0.99743 0.89505 1.23444 1.01346 0.93124 1.00313 1.21526 0.95777 0.87666 0.89708 0.90728 1.42433 1.06679 1.40544 1.45474 1.19346 0.88449 1.13213 1.16388 0.91078 1.24772 0.96193 0.99874 1.00171 1.69668 1.15721 1.35363 1.37234 0.86125 0.81078 0.79657 0.79368 1.20565 1.21851 1.21874 1.23942 1.00354 1.01128 0.94718 0.91868 0.92450 0.90197 0.81482 0.81098 0.77108 0.91280 0.91835 0.90086 0.92040 0.78046 0.93496 0.92885 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.97 36.00 0.36 -0.53 16 2 C -0.11 -1.21 6.35 -102.54 -0.65 -1.86 16 3 C -0.03 -0.23 11.82 -16.82 -0.20 -0.43 16 4 N -0.55 -3.37 5.90 -12.84 -0.08 -3.44 16 5 H 0.42 1.05 8.96 -40.82 -0.37 0.68 16 6 C 0.05 0.36 11.40 -16.84 -0.19 0.17 16 7 C -0.22 -2.65 6.29 -103.35 -0.65 -3.30 16 8 C 0.58 8.42 7.81 -12.60 -0.10 8.32 16 9 O -0.55 -9.87 15.32 5.25 0.08 -9.79 16 10 N -0.73 -8.89 5.55 -61.43 -0.34 -9.23 16 11 C 0.13 1.86 5.51 -4.04 -0.02 1.84 16 12 C -0.13 -1.72 3.75 -89.81 -0.34 -2.06 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.14 -2.30 7.39 -25.92 -0.19 -2.49 16 15 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 16 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 17 N -0.71 -17.93 5.40 -52.64 -0.28 -18.22 16 18 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.16 -2.67 7.43 -25.92 -0.19 -2.86 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.05 6.86 -51.93 -0.36 0.69 16 30 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.17 0.82 7.45 -52.48 -0.39 0.43 16 32 H 0.40 3.68 7.42 -40.82 -0.30 3.38 16 33 H 0.07 1.09 7.85 -51.93 -0.41 0.69 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.39 10.35 7.92 -40.82 -0.32 10.02 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 40 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -34.88 337.37 -8.46 -43.34 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.90 Total: 10.21 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.72 Total: -7.69 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.02 Total: -58.52 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.88 -8.46 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086271253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.746 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds