Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34493 * 126.83588 * 2 1 4 4 N 1.36445 * 108.85783 * 180.26618 * 3 2 1 5 5 H 0.96997 * 124.84708 * 179.69262 * 4 3 2 6 6 C 1.34656 * 110.29933 * 359.71338 * 4 3 2 7 7 C 1.36771 * 108.39695 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.93985 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99705 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00412 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47156 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.84523 * 43.80460 * 12 11 10 14 14 C 1.53780 * 113.61378 * 175.00176 * 12 11 10 15 15 C 1.53784 * 87.07849 * 140.06535 * 14 12 11 16 16 H 1.08997 * 113.60993 * 89.20502 * 15 14 12 17 17 N 1.46504 * 113.61174 * 220.01651 * 15 14 12 18 18 C 1.36943 * 119.99781 * 205.00320 * 17 15 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 15 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48504 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00078 * 22 20 18 26 26 C 1.53774 * 87.08229 * 334.56543 * 15 14 12 27 27 H 1.08997 * 109.46843 * 270.19687 * 1 2 3 28 28 H 1.08998 * 109.47776 * 30.19925 * 1 2 3 29 29 H 1.09003 * 109.47425 * 150.20042 * 1 2 3 30 30 H 1.08002 * 125.56855 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.80030 * 179.97438 * 6 4 3 32 32 H 0.97001 * 119.99810 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.46989 * 60.00166 * 11 10 8 34 34 H 1.08995 * 109.47537 * 299.99889 * 11 10 8 35 35 H 1.09000 * 113.61564 * 25.52145 * 14 12 11 36 36 H 1.08999 * 113.69309 * 254.62711 * 14 12 11 37 37 H 0.97000 * 120.00410 * 25.00645 * 17 15 14 38 38 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 39 39 H 1.09009 * 113.61213 * 139.98280 * 26 15 14 40 40 H 1.08998 * 113.61955 * 270.87867 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0060 5 1 4.3839 1.2414 -0.0115 6 6 3.6656 -0.6902 -0.0036 7 6 2.3864 -1.1740 0.0035 8 6 1.9750 -2.5880 0.0087 9 8 0.7937 -2.8776 0.0145 10 7 2.9074 -3.5611 0.0072 11 6 2.4981 -4.9678 0.0130 12 6 3.7407 -5.8605 0.0093 13 1 4.5108 -5.5168 0.6998 14 6 3.4226 -7.3596 0.1376 15 6 4.5341 -7.6036 -0.8968 16 1 5.5209 -7.7380 -0.4537 17 7 4.2051 -8.6404 -1.8781 18 6 5.2069 -9.3261 -2.5117 19 1 6.2396 -9.1022 -2.2882 20 6 4.8952 -10.3045 -3.4458 21 7 3.6368 -10.5769 -3.7186 22 14 6.2619 -11.2344 -4.3157 23 1 7.5785 -10.7434 -3.8353 24 1 6.1374 -12.6850 -4.0234 25 1 6.1563 -11.0136 -5.7804 26 6 4.2719 -6.1742 -1.3994 27 1 -0.3633 0.0035 1.0276 28 1 -0.3634 0.8881 -0.5169 29 1 -0.3634 -0.8918 -0.5107 30 1 1.9867 2.1059 -0.0004 31 1 4.5665 -1.2859 -0.0076 32 1 3.8495 -3.3301 0.0031 33 1 1.8992 -5.1756 -0.8737 34 1 1.9073 -5.1707 0.9062 35 1 2.4279 -7.6270 -0.2191 36 1 3.6442 -7.7716 1.1221 37 1 3.2776 -8.8412 -2.0792 38 1 3.4190 -11.2608 -4.3710 39 1 5.1798 -5.6279 -1.6554 40 1 3.5094 -6.1175 -2.1763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086271253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = 5.153247 kcal Electronic energy + Delta-G solvation = -20467.517342 eV Core-core repulsion = 17282.415213 eV Total energy + Delta-G solvation = -3185.102129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04776 -40.46760 -39.47709 -35.99612 -34.97001 -33.30821 -32.27928 -31.00193 -28.32969 -27.42374 -26.43476 -25.84063 -23.80131 -22.38477 -21.04233 -20.53047 -20.00517 -19.16535 -18.97242 -17.27536 -17.04681 -16.48110 -16.33273 -15.96267 -15.40382 -15.24383 -14.96706 -14.75672 -14.41195 -14.22447 -13.90759 -13.57052 -13.39800 -13.25085 -13.21588 -13.02244 -12.90212 -12.64738 -12.29325 -12.14666 -12.04504 -11.56451 -11.53214 -11.08258 -10.85092 -10.74678 -10.07435 -9.48950 -9.14789 -8.96577 -7.93473 -5.21930 0.83036 1.47862 1.48877 1.52574 1.58859 2.28832 2.52658 2.57823 2.62692 3.38693 3.73885 3.78681 3.92570 4.03163 4.12884 4.27819 4.33829 4.37340 4.44361 4.51819 4.59702 4.71583 4.84814 4.91083 4.94507 4.99936 5.01588 5.08345 5.18022 5.24567 5.35002 5.40558 5.50374 5.57447 5.76811 5.85530 5.99719 6.28986 6.70090 6.78388 7.34088 7.42942 8.12775 8.34411 9.30497 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.002757 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.598844 B =10153.817174 C =10394.689676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.154 4.154 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.071 3.929 7 C -0.273 4.273 8 C 0.577 3.423 9 O -0.598 6.598 10 N -0.712 5.712 11 C 0.141 3.859 12 C -0.093 4.093 13 H 0.125 0.875 14 C -0.139 4.139 15 C 0.144 3.856 16 H 0.084 0.916 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.153 4.153 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.201 0.799 31 H 0.207 0.793 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 26.898 11.235 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.067 4.067 7 C -0.283 4.283 8 C 0.368 3.632 9 O -0.480 6.480 10 N -0.364 5.364 11 C 0.017 3.983 12 C -0.112 4.112 13 H 0.143 0.857 14 C -0.178 4.178 15 C 0.034 3.966 16 H 0.102 0.898 17 N -0.369 5.369 18 C -0.371 4.371 19 H 0.099 0.901 20 C -0.274 4.274 21 N -0.625 5.625 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.193 4.193 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.218 0.782 31 H 0.224 0.776 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.169 26.725 11.192 29.147 hybrid contribution 0.431 -0.840 -0.921 1.319 sum 3.600 25.885 10.271 28.080 Atomic orbital electron populations 1.20095 0.90189 1.01905 1.01481 1.20824 0.95931 0.91612 1.07668 1.21958 0.82463 0.99726 1.09700 1.41540 1.08714 1.06468 1.56060 0.72088 1.22346 0.98174 0.84709 1.01495 1.20422 0.94862 0.91673 1.21375 1.17946 0.84960 0.85470 0.74825 1.90713 1.19446 1.84682 1.53150 1.45688 1.10039 1.05390 1.75286 1.21166 0.96636 0.79827 1.00713 1.22464 0.96903 0.93696 0.98137 0.85743 1.23340 0.99283 0.95167 1.00014 1.21968 0.97295 0.87440 0.89850 0.89836 1.42676 1.05504 1.41928 1.46765 1.19786 0.89387 1.12449 1.15495 0.90122 1.25620 0.98365 1.01613 1.01799 1.69836 1.17853 1.36403 1.38388 0.85062 0.79096 0.77880 0.77673 1.18613 1.22223 1.22349 1.23717 1.00504 0.99274 0.95842 0.92279 0.90247 0.93754 0.78247 0.77606 0.75034 0.94079 0.92086 0.91779 0.90211 0.79744 0.94145 0.91065 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 9.97 71.23 0.71 -1.05 16 2 C -0.15 -3.27 6.35 -18.52 -0.12 -3.39 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.86 16 4 N -0.53 -4.27 5.90 -194.55 -1.15 -5.42 16 5 H 0.44 -0.02 8.96 -92.71 -0.83 -0.85 16 6 C 0.07 0.88 11.40 83.92 0.96 1.83 16 7 C -0.27 -6.15 6.29 -19.04 -0.12 -6.27 16 8 C 0.58 16.81 7.81 86.62 0.68 17.48 16 9 O -0.60 -22.99 15.32 -4.13 -0.06 -23.05 16 10 N -0.71 -16.55 5.55 -466.53 -2.59 -19.14 16 11 C 0.14 3.83 5.51 86.38 0.48 4.31 16 12 C -0.09 -2.32 3.75 -10.27 -0.04 -2.35 16 13 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.14 -4.33 7.39 31.12 0.23 -4.10 16 15 C 0.14 5.44 4.48 45.52 0.20 5.64 16 16 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 17 N -0.73 -37.22 5.40 -320.44 -1.73 -38.95 16 18 C -0.24 -13.28 9.97 84.03 0.84 -12.45 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 21 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 22 Si 0.97 46.37 29.55 68.60 2.03 48.39 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 C -0.15 -4.88 7.43 31.12 0.23 -4.65 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 30 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 31 H 0.21 0.91 7.45 -2.91 -0.02 0.89 16 32 H 0.41 6.39 7.42 -92.71 -0.69 5.70 16 33 H 0.04 1.36 7.85 -2.38 -0.02 1.34 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.37 20.66 7.92 -92.71 -0.73 19.92 16 38 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.05 1.97 7.90 -2.39 -0.02 1.95 16 Total: -1.00 -80.33 337.37 1.10 -79.23 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -1.18 Total: 28.03 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.50 Total: -8.44 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -5.18 Total: -124.16 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -80.33 1.10 -79.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086271253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.383 kcal (2) G-P(sol) polarization free energy of solvation -80.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds