Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39828 * 126.45760 * 2 1 4 4 C 1.35453 * 107.86576 * 180.02562 * 3 2 1 5 5 N 1.35537 * 108.87115 * 0.02562 * 4 3 2 6 6 H 0.97001 * 125.67560 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64067 * 0.24461 * 5 4 3 8 8 C 1.46684 * 126.22806 * 179.76057 * 7 5 4 9 9 O 1.21696 * 119.99201 * 180.02562 * 8 7 5 10 10 N 1.34767 * 120.00109 * 0.02562 * 8 7 5 11 11 C 1.46504 * 120.00038 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47471 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.85038 * 316.20366 * 12 11 10 14 14 C 1.53780 * 113.61410 * 87.50317 * 12 11 10 15 15 C 1.53777 * 87.08061 * 139.98294 * 14 12 11 16 16 H 1.09003 * 113.61603 * 220.02109 * 15 14 12 17 17 N 1.46499 * 113.69101 * 89.12897 * 15 14 12 18 18 C 1.36937 * 119.99956 * 107.46175 * 17 15 14 19 19 H 1.08005 * 120.00271 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99946 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99707 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99950 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46812 * 90.00538 * 22 20 18 24 24 H 1.48496 * 109.47170 * 210.00129 * 22 20 18 25 25 H 1.48494 * 109.47313 * 330.00749 * 22 20 18 26 26 C 1.53776 * 87.08219 * 334.56668 * 15 14 12 27 27 H 1.08997 * 109.47280 * 89.97443 * 1 2 3 28 28 H 1.09001 * 109.47034 * 209.97636 * 1 2 3 29 29 H 1.08998 * 109.47175 * 329.97288 * 1 2 3 30 30 H 1.08003 * 126.06744 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.56322 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00206 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.47289 * 300.00349 * 11 10 8 34 34 H 1.09001 * 109.46681 * 60.00699 * 11 10 8 35 35 H 1.09000 * 113.61625 * 254.53421 * 14 12 11 36 36 H 1.09005 * 113.61210 * 25.43357 * 14 12 11 37 37 H 0.97001 * 120.00217 * 287.46562 * 17 15 14 38 38 H 0.96999 * 119.99590 * 179.97438 * 21 20 18 39 39 H 1.09002 * 113.62166 * 270.88356 * 26 15 14 40 40 H 1.09005 * 113.69081 * 139.98626 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6626 -0.0015 6 1 4.4191 -1.2244 -0.0024 7 6 2.3262 -1.1089 -0.0071 8 6 1.8898 -2.5093 -0.0148 9 8 0.7026 -2.7765 -0.0197 10 7 2.8036 -3.4999 -0.0164 11 6 2.3677 -4.8985 -0.0236 12 6 3.5931 -5.8147 -0.0234 13 1 4.3685 -5.4846 -0.7147 14 6 4.1187 -6.1402 1.3847 15 6 4.3534 -7.5737 0.8802 16 1 4.0942 -8.3412 1.6095 17 7 5.6759 -7.7789 0.2842 18 6 6.6241 -8.5043 0.9549 19 1 6.3969 -8.9256 1.9231 20 6 7.8773 -8.6983 0.3903 21 7 8.7885 -9.3960 1.0348 22 14 8.2701 -7.9703 -1.2845 23 1 8.8330 -6.6070 -1.1120 24 1 9.2615 -8.8310 -1.9782 25 1 7.0279 -7.8940 -2.0947 26 6 3.2465 -7.3073 -0.1534 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 2.0136 2.1548 -0.0004 31 1 4.4972 1.3252 -0.0003 32 1 3.7500 -3.2868 -0.0121 33 1 1.7665 -5.0963 0.8639 34 1 1.7717 -5.0887 -0.9161 35 1 5.0369 -5.6116 1.6410 36 1 3.3576 -6.0698 2.1619 37 1 5.8799 -7.4009 -0.5855 38 1 9.6641 -9.5318 0.6401 39 1 2.2469 -7.5560 0.2031 40 1 3.4592 -7.7205 -1.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086354725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = 35.221555 kcal Electronic energy + Delta-G solvation = -20775.688944 eV Core-core repulsion = 17591.890675 eV Total energy + Delta-G solvation = -3183.798269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55176 -39.49731 -38.49042 -34.92975 -33.37921 -32.62914 -30.85858 -30.05075 -27.89529 -26.64884 -25.24623 -23.67114 -22.43963 -21.77223 -20.82122 -19.55759 -18.91976 -18.35546 -17.70931 -16.05301 -15.95850 -15.63212 -15.01529 -14.60165 -14.32420 -14.08264 -13.91565 -13.59907 -13.41660 -13.19411 -12.83553 -12.80296 -12.55545 -12.44743 -12.10628 -11.77425 -11.63122 -11.43005 -10.99177 -10.59080 -10.40225 -10.20053 -9.96771 -9.72611 -9.59482 -9.20252 -9.02521 -8.98586 -8.37195 -7.37612 -5.86240 -3.22743 1.27031 2.49897 2.84457 3.04990 3.24447 3.28029 3.30404 3.37174 4.49198 4.65854 4.75907 4.85018 4.86283 4.95230 5.02367 5.10752 5.31930 5.36774 5.43216 5.54841 5.68059 5.69021 5.72018 5.79376 5.85267 5.93423 6.06185 6.14364 6.17279 6.26586 6.41473 6.49150 6.54190 6.66660 6.72510 6.81566 7.10382 7.38245 7.91565 8.05969 8.33473 9.10933 9.83059 10.02183 11.31879 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.003426 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.750811 B = 8171.040158 C = 8899.973750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.076 4.076 3 C -0.214 4.214 4 C 0.025 3.975 5 N -0.541 5.541 6 H 0.417 0.583 7 C -0.060 4.060 8 C 0.586 3.414 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.132 3.868 12 C -0.124 4.124 13 H 0.088 0.912 14 C -0.167 4.167 15 C 0.173 3.827 16 H 0.072 0.928 17 N -0.730 5.730 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.277 1.277 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.171 0.829 32 H 0.394 0.606 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.362 0.638 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 19.519 -3.058 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.238 4.238 4 C -0.111 4.111 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.173 4.173 8 C 0.374 3.626 9 O -0.408 6.408 10 N -0.378 5.378 11 C 0.010 3.990 12 C -0.143 4.143 13 H 0.106 0.894 14 C -0.208 4.208 15 C 0.061 3.939 16 H 0.090 0.910 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.188 4.188 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.188 0.812 32 H 0.228 0.772 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.194 0.806 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.219 18.969 -2.893 23.301 hybrid contribution 1.522 0.506 -1.246 2.032 sum -11.697 19.475 -4.139 23.092 Atomic orbital electron populations 1.20338 0.89322 1.02856 1.02172 1.19964 0.95911 0.90788 1.01790 1.20806 0.91844 0.98800 1.12375 1.22024 0.99607 0.82971 1.06458 1.41994 1.07251 1.07363 1.57072 0.74553 1.20292 0.83746 0.93669 1.19567 1.17068 0.85931 0.83034 0.76601 1.90804 1.15997 1.83339 1.50626 1.45964 1.09259 1.06893 1.75639 1.21497 0.96932 0.78453 1.02158 1.22763 0.96472 0.95226 0.99860 0.89368 1.23867 1.00564 1.01845 0.94484 1.20999 0.85010 0.94070 0.93827 0.91016 1.42515 1.10188 1.63650 1.20651 1.19120 0.91292 1.25158 1.02176 0.88992 1.24687 0.96231 1.00020 0.98087 1.69696 1.05318 1.44244 1.38586 0.86565 0.77776 0.78895 0.85366 1.21128 1.21572 1.20338 1.23461 1.00158 0.93835 1.01317 0.91593 0.90148 0.92066 0.83992 0.81183 0.77235 0.91127 0.91530 0.91410 0.90828 0.80554 0.92937 0.89887 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.82 36.01 0.35 -0.60 16 2 C -0.08 -0.86 6.21 -104.16 -0.65 -1.51 16 3 C -0.21 -1.96 10.76 -39.98 -0.43 -2.39 16 4 C 0.03 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.58 5.99 -9.39 -0.06 -4.64 16 6 H 0.42 2.50 8.19 -40.82 -0.33 2.17 16 7 C -0.06 -0.70 7.06 -81.98 -0.58 -1.28 16 8 C 0.59 7.79 7.79 -12.86 -0.10 7.69 16 9 O -0.53 -8.59 14.81 5.19 0.08 -8.52 16 10 N -0.73 -8.35 5.55 -61.61 -0.34 -8.70 16 11 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 12 C -0.12 -1.66 3.63 -89.81 -0.33 -1.98 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.17 -2.53 7.43 -25.92 -0.19 -2.72 16 15 C 0.17 3.12 4.56 -67.12 -0.31 2.81 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.73 -16.48 5.12 -52.64 -0.27 -16.75 16 18 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 22 Si 0.88 21.38 27.74 -169.99 -4.71 16.66 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 26 C -0.15 -2.14 7.39 -25.92 -0.19 -2.33 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.99 6.51 -51.93 -0.34 0.65 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.39 3.71 7.60 -40.82 -0.31 3.40 16 33 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 37 H 0.36 7.98 5.76 -40.82 -0.24 7.75 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -33.26 333.24 -8.25 -41.52 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.85 Total: 10.86 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.89 Total: -7.57 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.11 Total: -57.97 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.26 -8.25 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086354725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.739 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds