Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39828 * 126.45760 * 2 1 4 4 C 1.35453 * 107.86576 * 180.02562 * 3 2 1 5 5 N 1.35537 * 108.87115 * 0.02562 * 4 3 2 6 6 H 0.97001 * 125.67560 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64067 * 0.24461 * 5 4 3 8 8 C 1.46684 * 126.22806 * 179.76057 * 7 5 4 9 9 O 1.21696 * 119.99201 * 180.02562 * 8 7 5 10 10 N 1.34767 * 120.00109 * 0.02562 * 8 7 5 11 11 C 1.46504 * 120.00038 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47471 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.85038 * 316.20366 * 12 11 10 14 14 C 1.53780 * 113.61410 * 87.50317 * 12 11 10 15 15 C 1.53777 * 87.08061 * 139.98294 * 14 12 11 16 16 H 1.09003 * 113.61603 * 220.02109 * 15 14 12 17 17 N 1.46499 * 113.69101 * 89.12897 * 15 14 12 18 18 C 1.36937 * 119.99956 * 107.46175 * 17 15 14 19 19 H 1.08005 * 120.00271 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99946 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99707 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99950 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46812 * 90.00538 * 22 20 18 24 24 H 1.48496 * 109.47170 * 210.00129 * 22 20 18 25 25 H 1.48494 * 109.47313 * 330.00749 * 22 20 18 26 26 C 1.53776 * 87.08219 * 334.56668 * 15 14 12 27 27 H 1.08997 * 109.47280 * 89.97443 * 1 2 3 28 28 H 1.09001 * 109.47034 * 209.97636 * 1 2 3 29 29 H 1.08998 * 109.47175 * 329.97288 * 1 2 3 30 30 H 1.08003 * 126.06744 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.56322 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00206 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.47289 * 300.00349 * 11 10 8 34 34 H 1.09001 * 109.46681 * 60.00699 * 11 10 8 35 35 H 1.09000 * 113.61625 * 254.53421 * 14 12 11 36 36 H 1.09005 * 113.61210 * 25.43357 * 14 12 11 37 37 H 0.97001 * 120.00217 * 287.46562 * 17 15 14 38 38 H 0.96999 * 119.99590 * 179.97438 * 21 20 18 39 39 H 1.09002 * 113.62166 * 270.88356 * 26 15 14 40 40 H 1.09005 * 113.69081 * 139.98626 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6626 -0.0015 6 1 4.4191 -1.2244 -0.0024 7 6 2.3262 -1.1089 -0.0071 8 6 1.8898 -2.5093 -0.0148 9 8 0.7026 -2.7765 -0.0197 10 7 2.8036 -3.4999 -0.0164 11 6 2.3677 -4.8985 -0.0236 12 6 3.5931 -5.8147 -0.0234 13 1 4.3685 -5.4846 -0.7147 14 6 4.1187 -6.1402 1.3847 15 6 4.3534 -7.5737 0.8802 16 1 4.0942 -8.3412 1.6095 17 7 5.6759 -7.7789 0.2842 18 6 6.6241 -8.5043 0.9549 19 1 6.3969 -8.9256 1.9231 20 6 7.8773 -8.6983 0.3903 21 7 8.7885 -9.3960 1.0348 22 14 8.2701 -7.9703 -1.2845 23 1 8.8330 -6.6070 -1.1120 24 1 9.2615 -8.8310 -1.9782 25 1 7.0279 -7.8940 -2.0947 26 6 3.2465 -7.3073 -0.1534 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 2.0136 2.1548 -0.0004 31 1 4.4972 1.3252 -0.0003 32 1 3.7500 -3.2868 -0.0121 33 1 1.7665 -5.0963 0.8639 34 1 1.7717 -5.0887 -0.9161 35 1 5.0369 -5.6116 1.6410 36 1 3.3576 -6.0698 2.1619 37 1 5.8799 -7.4009 -0.5855 38 1 9.6641 -9.5318 0.6401 39 1 2.2469 -7.5560 0.2031 40 1 3.4592 -7.7205 -1.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086354725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = 11.736623 kcal Electronic energy + Delta-G solvation = -20776.707327 eV Core-core repulsion = 17591.890675 eV Total energy + Delta-G solvation = -3184.816652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28404 -40.60663 -39.65665 -36.17350 -35.07600 -33.43756 -32.69691 -30.93424 -28.94283 -27.56583 -26.48757 -25.44068 -23.61595 -22.84960 -21.55820 -20.64206 -19.89204 -19.62040 -19.39561 -17.12261 -16.88986 -16.60128 -16.50136 -16.12299 -15.41244 -15.26505 -14.89987 -14.70086 -14.60602 -14.52205 -14.08340 -13.82555 -13.59252 -13.37461 -13.17927 -13.12540 -13.03179 -12.68805 -12.54551 -12.26639 -11.91436 -11.68007 -11.55465 -11.13771 -10.95372 -10.83600 -10.20431 -9.70520 -9.31947 -9.11605 -8.04276 -5.38304 0.45551 1.35744 1.39828 1.47609 1.82906 2.07466 2.26646 2.33200 2.46568 3.26043 3.48629 3.68929 3.72872 3.94433 3.98225 4.23877 4.26003 4.26420 4.33173 4.39506 4.67694 4.73994 4.87664 4.89168 4.90868 4.94809 5.00456 5.05708 5.15834 5.21926 5.28625 5.41870 5.47268 5.51010 5.77052 5.79104 5.98371 6.21022 6.43966 6.60329 7.06111 7.11791 7.82616 8.01502 9.17307 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.003426 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.750811 B = 8171.040158 C = 8899.973750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.095 4.095 3 C -0.231 4.231 4 C 0.046 3.954 5 N -0.532 5.532 6 H 0.429 0.571 7 C -0.091 4.091 8 C 0.583 3.417 9 O -0.569 6.569 10 N -0.719 5.719 11 C 0.140 3.860 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.155 4.155 15 C 0.145 3.855 16 H 0.057 0.943 17 N -0.733 5.733 18 C -0.234 4.234 19 H 0.056 0.944 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.251 1.251 26 C -0.133 4.133 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.211 0.789 32 H 0.405 0.595 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.367 0.633 38 H 0.258 0.742 39 H 0.106 0.894 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 22.084 -4.548 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.091 4.091 5 N -0.129 5.129 6 H 0.268 0.732 7 C -0.203 4.203 8 C 0.372 3.628 9 O -0.449 6.449 10 N -0.370 5.370 11 C 0.017 3.983 12 C -0.123 4.123 13 H 0.109 0.891 14 C -0.195 4.195 15 C 0.036 3.964 16 H 0.075 0.925 17 N -0.375 5.375 18 C -0.365 4.365 19 H 0.074 0.926 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.176 1.176 26 C -0.173 4.173 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.178 0.822 31 H 0.228 0.772 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.067 0.933 39 H 0.125 0.875 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.541 21.553 -4.382 25.828 hybrid contribution 1.557 -0.272 -0.660 1.713 sum -11.984 21.281 -5.043 24.939 Atomic orbital electron populations 1.20300 0.89565 1.02573 1.02052 1.20296 0.96337 0.91865 1.01916 1.21116 0.92200 0.99151 1.12957 1.22703 1.00487 0.82695 1.03206 1.42011 1.06609 1.07990 1.56329 0.73193 1.20102 0.85274 0.92826 1.22126 1.17330 0.85549 0.83942 0.75932 1.90778 1.17516 1.84023 1.52585 1.45846 1.09726 1.06326 1.75061 1.21343 0.96189 0.78652 1.02124 1.22582 0.96695 0.94808 0.98262 0.89054 1.23713 1.00582 0.98966 0.96235 1.21333 0.84290 0.95423 0.95359 0.92507 1.42424 1.10950 1.63382 1.20750 1.19067 0.92297 1.24166 1.00922 0.92633 1.25541 0.96152 1.01273 1.02717 1.69891 1.05869 1.46803 1.40935 0.85385 0.78159 0.77932 0.80140 1.20059 1.22490 1.17552 1.23363 0.99662 0.94291 0.99946 0.91646 0.92431 0.90260 0.82175 0.77230 0.75924 0.91413 0.91435 0.92724 0.89175 0.79939 0.93310 0.87535 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.82 71.24 0.70 -1.14 16 2 C -0.09 -2.05 6.21 -19.57 -0.12 -2.17 16 3 C -0.23 -3.61 10.76 22.01 0.24 -3.37 16 4 C 0.05 0.54 11.89 83.48 0.99 1.53 16 5 N -0.53 -7.56 5.99 -183.61 -1.10 -8.66 16 6 H 0.43 3.83 8.19 -92.71 -0.76 3.07 16 7 C -0.09 -1.99 7.06 40.35 0.28 -1.70 16 8 C 0.58 15.00 7.79 86.45 0.67 15.67 16 9 O -0.57 -18.46 14.81 -4.34 -0.06 -18.53 16 10 N -0.72 -15.17 5.55 -467.07 -2.59 -17.76 16 11 C 0.14 3.13 5.51 86.38 0.48 3.61 16 12 C -0.10 -2.51 3.63 -10.27 -0.04 -2.55 16 13 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.15 -4.41 7.43 31.12 0.23 -4.18 16 15 C 0.15 5.11 4.56 45.51 0.21 5.32 16 16 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 17 N -0.73 -32.47 5.12 -320.45 -1.64 -34.11 16 18 C -0.23 -13.00 10.45 84.03 0.88 -12.12 16 19 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.98 -62.34 13.97 21.65 0.30 -62.04 16 22 Si 0.96 43.84 27.74 68.60 1.90 45.74 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 26 C -0.13 -3.52 7.39 31.12 0.23 -3.29 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.46 6.51 -2.39 -0.02 1.45 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.21 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.41 6.64 7.60 -92.70 -0.70 5.94 16 33 H 0.07 1.59 7.84 -2.39 -0.02 1.58 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 2.30 7.90 -2.38 -0.02 2.28 16 37 H 0.37 15.37 5.76 -92.71 -0.53 14.84 16 38 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 40 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -74.40 333.24 1.04 -73.36 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.99 Total: 29.71 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.22 Total: -7.71 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.03 Total: -122.58 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.53 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Total: -74.40 1.04 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086354725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.097 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds