Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34487 * 126.83273 * 2 1 4 4 N 1.36455 * 108.85649 * 179.75439 * 3 2 1 5 5 H 0.97000 * 124.84879 * 180.20695 * 4 3 2 6 6 C 1.34653 * 110.29695 * 0.23360 * 4 3 2 7 7 C 1.36771 * 108.40063 * 359.97438 * 6 4 3 8 8 C 1.47256 * 126.94688 * 179.97438 * 7 6 4 9 9 O 1.21626 * 120.00234 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00137 * 0.02766 * 8 7 6 11 11 C 1.46501 * 120.00213 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46819 * 179.97438 * 11 10 8 13 13 H 1.08996 * 112.84975 * 316.19509 * 12 11 10 14 14 C 1.53780 * 113.61231 * 87.50703 * 12 11 10 15 15 C 1.53773 * 87.08289 * 139.97963 * 14 12 11 16 16 H 1.09001 * 113.61647 * 220.01942 * 15 14 12 17 17 N 1.46501 * 113.61980 * 89.11100 * 15 14 12 18 18 C 1.36936 * 119.99856 * 107.50095 * 17 15 14 19 19 H 1.08002 * 120.00259 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00130 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99474 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46950 * 89.99927 * 22 20 18 24 24 H 1.48496 * 109.47011 * 209.99816 * 22 20 18 25 25 H 1.48501 * 109.47170 * 330.00101 * 22 20 18 26 26 C 1.53783 * 113.61120 * 184.99984 * 12 11 10 27 27 H 1.09005 * 109.47233 * 90.02129 * 1 2 3 28 28 H 1.08999 * 109.47163 * 210.02029 * 1 2 3 29 29 H 1.09001 * 109.47282 * 330.02039 * 1 2 3 30 30 H 1.08002 * 125.57470 * 0.02914 * 3 2 1 31 31 H 1.07999 * 125.80575 * 179.97438 * 6 4 3 32 32 H 0.97006 * 119.99845 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47013 * 299.99872 * 11 10 8 34 34 H 1.09000 * 109.46991 * 60.00289 * 11 10 8 35 35 H 1.09009 * 113.61167 * 254.52863 * 14 12 11 36 36 H 1.09003 * 113.61763 * 25.42597 * 14 12 11 37 37 H 0.97000 * 119.99934 * 287.51234 * 17 15 14 38 38 H 0.96994 * 119.99340 * 180.02562 * 21 20 18 39 39 H 1.08998 * 113.61388 * 334.56791 * 26 12 11 40 40 H 1.08997 * 113.61254 * 105.46706 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0055 5 1 4.3840 1.2414 0.0096 6 6 3.6656 -0.6901 0.0040 7 6 2.3864 -1.1741 -0.0020 8 6 1.9750 -2.5880 -0.0061 9 8 0.7937 -2.8776 -0.0119 10 7 2.9074 -3.5612 -0.0034 11 6 2.4980 -4.9678 -0.0069 12 6 3.7407 -5.8605 -0.0034 13 1 4.5100 -5.5178 -0.6953 14 6 4.2714 -6.1721 1.4059 15 6 4.5336 -7.6023 0.9056 16 1 4.2885 -8.3726 1.6368 17 7 5.8604 -7.7821 0.3109 18 6 6.8223 -8.4874 0.9836 19 1 6.6027 -8.9113 1.9524 20 6 8.0796 -8.6573 0.4205 21 7 8.3470 -8.1410 -0.7604 22 14 9.3916 -9.6199 1.3378 23 1 9.3040 -11.0548 0.9653 24 1 10.7332 -9.0958 0.9769 25 1 9.1803 -9.4745 2.8005 26 6 3.4224 -7.3598 -0.1295 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5135 30 1 1.9867 2.1059 0.0004 31 1 4.5664 -1.2860 0.0071 32 1 3.8495 -3.3302 0.0009 33 1 1.8994 -5.1742 0.8803 34 1 1.9070 -5.1720 -0.8997 35 1 5.1793 -5.6255 1.6613 36 1 3.5086 -6.1141 2.1824 37 1 6.0575 -7.4015 -0.5592 38 1 9.2254 -8.2601 -1.1540 39 1 2.4276 -7.6265 0.2272 40 1 3.6448 -7.7720 -1.1137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086552517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = 31.004313 kcal Electronic energy + Delta-G solvation = -20614.831498 eV Core-core repulsion = 17430.850356 eV Total energy + Delta-G solvation = -3183.981143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32530 -39.27167 -38.22129 -34.52392 -33.18655 -32.55253 -30.61705 -29.76018 -27.07211 -26.67158 -25.02483 -23.84285 -22.81162 -21.57403 -20.04043 -19.40035 -18.54002 -18.19058 -17.27850 -16.22035 -15.67519 -15.25781 -14.87649 -14.46701 -14.16421 -14.00738 -13.91463 -13.49705 -13.13271 -13.05218 -12.85750 -12.77364 -12.45018 -12.20229 -11.88320 -11.51727 -11.34498 -11.02763 -10.85381 -10.45409 -10.17796 -10.04116 -9.69108 -9.67634 -9.40711 -8.96701 -8.88838 -8.65066 -8.45876 -7.00520 -5.81859 -3.10596 1.66520 2.24494 3.00000 3.40782 3.44088 3.46337 3.47691 3.63101 4.54959 4.66850 4.86401 4.92972 5.10466 5.13025 5.23773 5.28844 5.45403 5.47312 5.65535 5.68702 5.76518 5.76718 5.90563 5.96323 6.05722 6.14014 6.17178 6.25443 6.40295 6.55069 6.63272 6.66465 6.72358 6.76944 6.94399 7.06545 7.21934 7.68237 7.74206 8.37638 8.47333 9.48201 10.06227 10.40526 11.40679 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003082 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.017439 B = 9082.831414 C = 9831.271981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.111 4.111 3 C -0.030 4.030 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.048 3.952 7 C -0.227 4.227 8 C 0.585 3.415 9 O -0.550 6.550 10 N -0.725 5.725 11 C 0.133 3.867 12 C -0.119 4.119 13 H 0.092 0.908 14 C -0.168 4.168 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.398 0.602 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 18.210 1.075 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.088 4.088 7 C -0.237 4.237 8 C 0.374 3.626 9 O -0.428 6.428 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.138 4.138 13 H 0.110 0.890 14 C -0.209 4.209 15 C 0.054 3.946 16 H 0.080 0.920 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.188 4.188 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.232 0.768 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.524 17.960 1.183 21.372 hybrid contribution 1.837 0.106 0.110 1.843 sum -9.687 18.066 1.293 20.540 Atomic orbital electron populations 1.20183 0.89382 1.02499 1.01915 1.20567 0.95637 0.90396 1.05106 1.21567 0.82484 0.99165 1.12495 1.41489 1.08303 1.06719 1.57914 0.74633 1.21999 0.98707 0.83874 1.04262 1.20443 0.92656 0.93002 1.17622 1.17413 0.85435 0.84026 0.75753 1.90724 1.17292 1.83849 1.50977 1.45913 1.09494 1.06474 1.75670 1.21433 0.96965 0.78932 1.01650 1.22703 0.96317 0.95107 0.99655 0.89000 1.23881 1.00228 1.02188 0.94594 1.21064 0.86001 0.93712 0.93776 0.92000 1.42173 1.07294 1.63467 1.21537 1.19300 0.91383 1.25761 1.00747 0.90996 1.24763 0.97851 1.01306 0.97040 1.69665 1.22040 1.49755 1.16693 0.86169 0.81323 0.79644 0.78940 1.21655 1.21793 1.20708 1.23442 0.99760 0.94200 1.01372 0.91895 0.90293 0.92512 0.81514 0.80968 0.76826 0.91670 0.91933 0.91605 0.91373 0.78118 0.93470 0.90434 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.97 36.00 0.36 -0.53 16 2 C -0.11 -1.27 6.35 -102.54 -0.65 -1.92 16 3 C -0.03 -0.25 11.82 -16.82 -0.20 -0.45 16 4 N -0.55 -3.89 5.90 -12.85 -0.08 -3.97 16 5 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 6 C 0.05 0.44 11.40 -16.85 -0.19 0.25 16 7 C -0.23 -2.84 6.29 -103.35 -0.65 -3.49 16 8 C 0.59 8.72 7.81 -12.60 -0.10 8.62 16 9 O -0.55 -9.93 15.33 5.25 0.08 -9.85 16 10 N -0.72 -9.57 5.55 -61.43 -0.34 -9.91 16 11 C 0.13 1.88 5.51 -4.04 -0.02 1.86 16 12 C -0.12 -1.80 3.63 -89.80 -0.33 -2.13 16 13 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 14 C -0.17 -2.80 7.43 -25.92 -0.19 -3.00 16 15 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 16 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 17 N -0.71 -17.32 5.31 -52.64 -0.28 -17.60 16 18 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.03 6.87 -51.93 -0.36 0.67 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.17 1.13 7.45 -52.49 -0.39 0.74 16 32 H 0.40 4.44 7.42 -40.82 -0.30 4.14 16 33 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 36 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 37 H 0.38 9.96 7.90 -40.82 -0.32 9.63 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -33.68 337.23 -8.45 -42.13 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.90 Total: 11.66 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.72 Total: -7.65 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.03 Total: -58.41 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.68 -8.45 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086552517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.138 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds