Wall clock time and date at job start Mon Mar 30 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34487 * 126.83273 * 2 1 4 4 N 1.36455 * 108.85649 * 179.75439 * 3 2 1 5 5 H 0.97000 * 124.84879 * 180.20695 * 4 3 2 6 6 C 1.34653 * 110.29695 * 0.23360 * 4 3 2 7 7 C 1.36771 * 108.40063 * 359.97438 * 6 4 3 8 8 C 1.47256 * 126.94688 * 179.97438 * 7 6 4 9 9 O 1.21626 * 120.00234 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00137 * 0.02766 * 8 7 6 11 11 C 1.46501 * 120.00213 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46819 * 179.97438 * 11 10 8 13 13 H 1.08996 * 112.84975 * 316.19509 * 12 11 10 14 14 C 1.53780 * 113.61231 * 87.50703 * 12 11 10 15 15 C 1.53773 * 87.08289 * 139.97963 * 14 12 11 16 16 H 1.09001 * 113.61647 * 220.01942 * 15 14 12 17 17 N 1.46501 * 113.61980 * 89.11100 * 15 14 12 18 18 C 1.36936 * 119.99856 * 107.50095 * 17 15 14 19 19 H 1.08002 * 120.00259 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00130 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99474 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46950 * 89.99927 * 22 20 18 24 24 H 1.48496 * 109.47011 * 209.99816 * 22 20 18 25 25 H 1.48501 * 109.47170 * 330.00101 * 22 20 18 26 26 C 1.53783 * 113.61120 * 184.99984 * 12 11 10 27 27 H 1.09005 * 109.47233 * 90.02129 * 1 2 3 28 28 H 1.08999 * 109.47163 * 210.02029 * 1 2 3 29 29 H 1.09001 * 109.47282 * 330.02039 * 1 2 3 30 30 H 1.08002 * 125.57470 * 0.02914 * 3 2 1 31 31 H 1.07999 * 125.80575 * 179.97438 * 6 4 3 32 32 H 0.97006 * 119.99845 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47013 * 299.99872 * 11 10 8 34 34 H 1.09000 * 109.46991 * 60.00289 * 11 10 8 35 35 H 1.09009 * 113.61167 * 254.52863 * 14 12 11 36 36 H 1.09003 * 113.61763 * 25.42597 * 14 12 11 37 37 H 0.97000 * 119.99934 * 287.51234 * 17 15 14 38 38 H 0.96994 * 119.99340 * 180.02562 * 21 20 18 39 39 H 1.08998 * 113.61388 * 334.56791 * 26 12 11 40 40 H 1.08997 * 113.61254 * 105.46706 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0055 5 1 4.3840 1.2414 0.0096 6 6 3.6656 -0.6901 0.0040 7 6 2.3864 -1.1741 -0.0020 8 6 1.9750 -2.5880 -0.0061 9 8 0.7937 -2.8776 -0.0119 10 7 2.9074 -3.5612 -0.0034 11 6 2.4980 -4.9678 -0.0069 12 6 3.7407 -5.8605 -0.0034 13 1 4.5100 -5.5178 -0.6953 14 6 4.2714 -6.1721 1.4059 15 6 4.5336 -7.6023 0.9056 16 1 4.2885 -8.3726 1.6368 17 7 5.8604 -7.7821 0.3109 18 6 6.8223 -8.4874 0.9836 19 1 6.6027 -8.9113 1.9524 20 6 8.0796 -8.6573 0.4205 21 7 8.3470 -8.1410 -0.7604 22 14 9.3916 -9.6199 1.3378 23 1 9.3040 -11.0548 0.9653 24 1 10.7332 -9.0958 0.9769 25 1 9.1803 -9.4745 2.8005 26 6 3.4224 -7.3598 -0.1295 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5135 30 1 1.9867 2.1059 0.0004 31 1 4.5664 -1.2860 0.0071 32 1 3.8495 -3.3302 0.0009 33 1 1.8994 -5.1742 0.8803 34 1 1.9070 -5.1720 -0.8997 35 1 5.1793 -5.6255 1.6613 36 1 3.5086 -6.1141 2.1824 37 1 6.0575 -7.4015 -0.5592 38 1 9.2254 -8.2601 -1.1540 39 1 2.4276 -7.6265 0.2272 40 1 3.6448 -7.7720 -1.1137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086552517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:16 Heat of formation + Delta-G solvation = 7.551818 kcal Electronic energy + Delta-G solvation = -20615.848475 eV Core-core repulsion = 17430.850356 eV Total energy + Delta-G solvation = -3184.998119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05963 -40.51240 -39.52763 -35.94679 -34.91690 -33.31073 -32.18701 -30.97842 -28.36027 -27.41666 -26.41732 -25.71595 -23.96214 -22.85247 -20.92810 -20.36688 -19.64460 -19.31662 -19.09160 -17.23514 -16.91927 -16.58508 -16.34423 -15.78550 -15.54984 -15.20927 -14.85895 -14.67622 -14.50989 -14.30976 -14.00590 -13.64659 -13.56042 -13.28156 -13.23375 -12.92291 -12.89603 -12.62638 -12.30228 -12.14530 -12.04190 -11.52706 -11.46077 -11.00353 -10.87370 -10.69118 -10.06521 -9.50245 -9.16022 -8.98860 -7.94528 -5.22630 0.80917 1.48781 1.49985 1.52065 1.58338 2.29496 2.51822 2.56598 2.61437 3.38122 3.73806 3.82257 3.86057 4.01708 4.11703 4.19183 4.32273 4.34846 4.43079 4.49118 4.69660 4.77215 4.85250 4.91595 4.94732 4.95014 5.01478 5.13687 5.18246 5.30943 5.35718 5.39632 5.52328 5.61051 5.68299 5.85445 5.98683 6.29380 6.67144 6.74746 7.34370 7.39787 8.11402 8.34222 9.28797 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003082 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.017439 B = 9082.831414 C = 9831.271981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.152 4.152 3 C -0.010 4.010 4 N -0.534 5.534 5 H 0.437 0.563 6 C 0.065 3.935 7 C -0.271 4.271 8 C 0.580 3.420 9 O -0.592 6.592 10 N -0.718 5.718 11 C 0.143 3.857 12 C -0.100 4.100 13 H 0.083 0.917 14 C -0.152 4.152 15 C 0.144 3.856 16 H 0.059 0.941 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.270 1.270 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.203 0.797 31 H 0.198 0.802 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 19.811 1.912 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C -0.138 4.138 4 N -0.129 5.129 5 H 0.278 0.722 6 C -0.074 4.074 7 C -0.281 4.281 8 C 0.371 3.629 9 O -0.475 6.475 10 N -0.369 5.369 11 C 0.019 3.981 12 C -0.119 4.119 13 H 0.101 0.899 14 C -0.193 4.193 15 C 0.034 3.966 16 H 0.078 0.922 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.219 0.781 31 H 0.215 0.785 32 H 0.244 0.756 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.193 19.588 2.054 22.654 hybrid contribution 1.681 -0.342 -0.124 1.720 sum -9.512 19.246 1.930 21.555 Atomic orbital electron populations 1.20098 0.89776 1.02106 1.01525 1.20831 0.96079 0.91296 1.07569 1.22007 0.82288 0.99866 1.09650 1.41555 1.08877 1.06344 1.56092 0.72227 1.22283 0.98266 0.84842 1.02001 1.20457 0.94626 0.91993 1.21056 1.17855 0.84943 0.85259 0.74853 1.90691 1.18985 1.84614 1.53187 1.45817 1.09951 1.05898 1.75218 1.21248 0.96083 0.79331 1.01435 1.22485 0.96317 0.94778 0.98347 0.89879 1.23704 1.00190 0.99438 0.95955 1.21373 0.84898 0.95223 0.95061 0.92248 1.42300 1.08770 1.63466 1.21243 1.19670 0.92033 1.24872 1.00771 0.90616 1.25538 1.00045 1.03061 0.98071 1.69812 1.22194 1.51666 1.18274 0.85158 0.78396 0.78023 0.78301 1.21575 1.22222 1.19456 1.23357 0.99695 0.94608 0.99850 0.92334 0.93391 0.90103 0.78066 0.78548 0.75598 0.91799 0.92305 0.93119 0.89250 0.79303 0.94019 0.87796 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.97 71.23 0.71 -0.98 16 2 C -0.15 -3.33 6.35 -18.52 -0.12 -3.45 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.75 5.90 -194.55 -1.15 -6.89 16 5 H 0.44 1.35 8.96 -92.71 -0.83 0.52 16 6 C 0.06 1.02 11.40 83.92 0.96 1.98 16 7 C -0.27 -6.57 6.29 -19.04 -0.12 -6.69 16 8 C 0.58 17.37 7.81 86.61 0.68 18.05 16 9 O -0.59 -22.14 15.33 -4.11 -0.06 -22.20 16 10 N -0.72 -18.46 5.55 -466.52 -2.59 -21.05 16 11 C 0.14 3.89 5.51 86.38 0.48 4.37 16 12 C -0.10 -2.93 3.63 -10.26 -0.04 -2.97 16 13 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 14 C -0.15 -4.89 7.43 31.12 0.23 -4.66 16 15 C 0.14 5.53 4.56 45.52 0.21 5.74 16 16 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 17 N -0.72 -35.44 5.31 -320.45 -1.70 -37.14 16 18 C -0.24 -13.21 9.97 84.03 0.84 -12.37 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 21 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 22 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.14 -4.24 7.39 31.12 0.23 -4.01 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.05 1.32 6.87 -2.39 -0.02 1.30 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.20 1.99 7.45 -2.91 -0.02 1.97 16 32 H 0.41 8.61 7.42 -92.70 -0.69 7.92 16 33 H 0.06 1.79 7.84 -2.39 -0.02 1.77 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.09 2.52 7.90 -2.39 -0.02 2.50 16 37 H 0.37 19.70 7.90 -92.71 -0.73 18.97 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.10 2.72 8.10 -2.39 -0.02 2.70 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -74.40 337.23 1.13 -73.27 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.18 Total: 32.37 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.50 Total: -7.91 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -5.15 Total: -123.00 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.40 1.13 -73.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086552517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.820 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds