Wall clock time and date at job start Mon Mar 30 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34668 * 125.80192 * 2 1 4 4 H 0.96997 * 124.84442 * 0.03885 * 3 2 1 5 5 C 1.36445 * 110.29820 * 180.30135 * 3 2 1 6 6 C 1.34489 * 108.85665 * 359.72295 * 5 3 2 7 7 C 1.36771 * 125.80434 * 179.82586 * 2 1 3 8 8 C 1.47255 * 126.93962 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00168 * 359.70786 * 8 7 2 10 10 N 1.34783 * 120.00175 * 179.70790 * 8 7 2 11 11 C 1.46497 * 120.00261 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46838 * 60.00071 * 20 18 16 22 22 H 1.48501 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46682 * 300.00202 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.09006 * 109.46941 * 270.16952 * 1 2 3 28 28 H 1.08996 * 109.47190 * 30.17493 * 1 2 3 29 29 H 1.08997 * 109.46485 * 150.17216 * 1 2 3 30 30 H 1.08002 * 125.56998 * 179.74661 * 5 3 2 31 31 H 1.07994 * 126.83375 * 179.97438 * 6 5 3 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0005 5 6 3.6096 0.7275 -0.0067 6 6 3.6883 -0.6151 -0.0050 7 6 2.3072 -1.1092 0.0034 8 6 1.8703 -2.5155 0.0082 9 8 0.6840 -2.7838 0.0149 10 7 2.7851 -3.5054 0.0052 11 6 2.3505 -4.9044 0.0105 12 1 1.4113 -5.0156 0.5524 13 6 2.2154 -5.4428 -1.4383 14 6 2.4394 -6.9611 -1.2282 15 7 3.4716 -7.0486 -0.1792 16 6 4.3188 -8.1057 0.0206 17 1 5.0440 -8.0729 0.8203 18 6 4.2453 -9.2196 -0.8043 19 7 3.3616 -9.2596 -1.7789 20 14 5.4006 -10.6620 -0.5314 21 1 5.1927 -11.2114 0.8325 22 1 5.1215 -11.7171 -1.5384 23 1 6.8061 -10.2038 -0.6716 24 6 3.4413 -5.8126 0.6164 25 1 4.4094 -5.3145 0.5645 26 6 3.1017 -6.1389 2.0722 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3632 -0.8915 -0.5112 30 1 4.4498 1.4061 -0.0121 31 1 4.5890 -1.2108 -0.0095 32 1 3.7312 -3.2914 0.0002 33 1 2.9842 -5.0204 -2.0854 34 1 1.2205 -5.2462 -1.8376 35 1 2.7945 -7.4233 -2.1492 36 1 1.5178 -7.4379 -0.8942 37 1 3.3105 -10.0379 -2.3557 38 1 3.8735 -6.7860 2.4890 39 1 3.0510 -5.2156 2.6492 40 1 2.1387 -6.6478 2.1153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088514833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:52 Heat of formation + Delta-G solvation = 29.897007 kcal Electronic energy + Delta-G solvation = -21573.109899 eV Core-core repulsion = 18389.080740 eV Total energy + Delta-G solvation = -3184.029159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28967 -39.08364 -37.27691 -33.87477 -32.09144 -31.58094 -30.96674 -30.24819 -28.50034 -26.49820 -24.73827 -23.91462 -22.25153 -20.82403 -20.09179 -19.85942 -18.88447 -17.76664 -16.68589 -15.84243 -15.63666 -15.06454 -14.68343 -14.03600 -13.93359 -13.73408 -13.59188 -13.21975 -13.06615 -12.79900 -12.66330 -12.60453 -12.05101 -11.83483 -11.64177 -11.45936 -11.06892 -10.79561 -10.76165 -10.44069 -10.30095 -10.07482 -9.65333 -9.53567 -9.41844 -8.95396 -8.60720 -8.46773 -8.19423 -6.80979 -5.59759 -3.02446 1.79347 2.34799 2.99988 3.43510 3.47502 3.49047 3.75243 3.79842 4.53546 4.72944 4.87378 5.09375 5.17355 5.40742 5.47817 5.49148 5.54303 5.66042 5.73817 5.77946 5.88727 5.95316 6.13174 6.22894 6.36401 6.42316 6.48764 6.65359 6.66487 6.73755 6.82698 6.84411 6.98036 7.25173 7.31356 7.59624 7.68205 7.91485 8.02135 8.41153 8.70844 9.26390 9.87452 10.52142 11.43361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.003743 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.607311 B = 7479.310100 C = 7711.695732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.556 5.556 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.230 4.230 8 C 0.588 3.412 9 O -0.556 6.556 10 N -0.711 5.711 11 C 0.137 3.863 12 H 0.093 0.907 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.596 5.596 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.155 3.845 25 H 0.035 0.965 26 C -0.154 4.154 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.397 0.603 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.014 0.986 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 21.190 3.196 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 N -0.152 5.152 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.191 4.191 7 C -0.240 4.240 8 C 0.377 3.623 9 O -0.436 6.436 10 N -0.360 5.360 11 C 0.032 3.968 12 H 0.111 0.889 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.321 5.321 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.052 0.948 26 C -0.214 4.214 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.231 0.769 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.075 20.868 3.102 21.199 hybrid contribution 1.100 -0.198 0.221 1.140 sum -0.974 20.670 3.323 20.958 Atomic orbital electron populations 1.20569 0.87043 1.04166 1.03381 1.20349 0.93718 0.85632 1.02021 1.41579 1.06274 1.08292 1.59018 0.75013 1.21687 0.85613 0.96454 1.11107 1.22087 0.95993 0.93665 1.07339 1.20256 0.93154 0.92371 1.18196 1.17307 0.85456 0.83925 0.75631 1.90712 1.16674 1.84440 1.51755 1.45822 1.09413 1.06034 1.74703 1.22092 0.98330 0.78569 0.97770 0.88909 1.23395 1.00538 1.00134 0.95196 1.21944 0.90819 0.88790 0.95657 1.44487 1.39684 1.14745 1.33151 1.18986 1.10441 0.93285 1.12072 0.90550 1.24778 0.99259 0.98319 0.98255 1.69796 1.37044 1.29549 1.20595 0.86167 0.80185 0.82060 0.77159 1.21269 1.21630 1.21227 1.21001 0.94851 0.88608 0.90890 0.94761 1.22229 1.01795 0.99697 0.97679 0.90554 0.92098 0.87846 0.81494 0.83687 0.76910 0.92064 0.92080 0.87416 0.96830 0.93708 0.92821 0.94315 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.88 36.01 0.36 -0.60 16 2 C 0.10 1.15 7.18 -81.88 -0.59 0.57 16 3 N -0.56 -4.57 5.90 -9.10 -0.05 -4.63 16 4 H 0.41 1.93 8.96 -40.82 -0.37 1.57 16 5 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 6 C -0.17 -1.84 10.56 -37.50 -0.40 -2.24 16 7 C -0.23 -3.17 6.29 -103.35 -0.65 -3.82 16 8 C 0.59 9.90 7.81 -12.59 -0.10 9.80 16 9 O -0.56 -10.85 14.46 5.25 0.08 -10.77 16 10 N -0.71 -11.64 5.17 -53.15 -0.27 -11.91 16 11 C 0.14 2.65 2.85 -66.10 -0.19 2.46 16 12 H 0.09 1.92 7.27 -51.93 -0.38 1.54 16 13 C -0.15 -3.18 6.77 -24.59 -0.17 -3.34 16 14 C 0.15 3.83 5.89 -2.53 -0.01 3.81 16 15 N -0.60 -15.19 3.13 -162.57 -0.51 -15.70 16 16 C -0.22 -6.06 9.87 -15.06 -0.15 -6.21 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.15 3.23 3.47 -66.95 -0.23 3.00 16 25 H 0.03 0.70 7.72 -51.93 -0.40 0.30 16 26 C -0.15 -3.00 9.15 37.16 0.34 -2.66 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 1.31 6.47 -51.93 -0.34 0.98 16 30 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.15 1.38 7.69 -52.49 -0.40 0.98 16 32 H 0.40 5.65 7.49 -40.82 -0.31 5.34 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 3.00 5.87 -51.93 -0.30 2.69 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.05 1.06 8.03 -51.93 -0.42 0.64 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -33.05 327.40 -8.21 -41.26 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.84 Total: 6.17 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.08 Total: -0.02 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.28 Total: -58.67 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.05 -8.21 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088514833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.162 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds