Wall clock time and date at job start Mon Mar 30 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34668 * 125.80192 * 2 1 4 4 H 0.96997 * 124.84442 * 0.03885 * 3 2 1 5 5 C 1.36445 * 110.29820 * 180.30135 * 3 2 1 6 6 C 1.34489 * 108.85665 * 359.72295 * 5 3 2 7 7 C 1.36771 * 125.80434 * 179.82586 * 2 1 3 8 8 C 1.47255 * 126.93962 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00168 * 359.70786 * 8 7 2 10 10 N 1.34783 * 120.00175 * 179.70790 * 8 7 2 11 11 C 1.46497 * 120.00261 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46838 * 60.00071 * 20 18 16 22 22 H 1.48501 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46682 * 300.00202 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.09006 * 109.46941 * 270.16952 * 1 2 3 28 28 H 1.08996 * 109.47190 * 30.17493 * 1 2 3 29 29 H 1.08997 * 109.46485 * 150.17216 * 1 2 3 30 30 H 1.08002 * 125.56998 * 179.74661 * 5 3 2 31 31 H 1.07994 * 126.83375 * 179.97438 * 6 5 3 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0005 5 6 3.6096 0.7275 -0.0067 6 6 3.6883 -0.6151 -0.0050 7 6 2.3072 -1.1092 0.0034 8 6 1.8703 -2.5155 0.0082 9 8 0.6840 -2.7838 0.0149 10 7 2.7851 -3.5054 0.0052 11 6 2.3505 -4.9044 0.0105 12 1 1.4113 -5.0156 0.5524 13 6 2.2154 -5.4428 -1.4383 14 6 2.4394 -6.9611 -1.2282 15 7 3.4716 -7.0486 -0.1792 16 6 4.3188 -8.1057 0.0206 17 1 5.0440 -8.0729 0.8203 18 6 4.2453 -9.2196 -0.8043 19 7 3.3616 -9.2596 -1.7789 20 14 5.4006 -10.6620 -0.5314 21 1 5.1927 -11.2114 0.8325 22 1 5.1215 -11.7171 -1.5384 23 1 6.8061 -10.2038 -0.6716 24 6 3.4413 -5.8126 0.6164 25 1 4.4094 -5.3145 0.5645 26 6 3.1017 -6.1389 2.0722 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3632 -0.8915 -0.5112 30 1 4.4498 1.4061 -0.0121 31 1 4.5890 -1.2108 -0.0095 32 1 3.7312 -3.2914 0.0002 33 1 2.9842 -5.0204 -2.0854 34 1 1.2205 -5.2462 -1.8376 35 1 2.7945 -7.4233 -2.1492 36 1 1.5178 -7.4379 -0.8942 37 1 3.3105 -10.0379 -2.3557 38 1 3.8735 -6.7860 2.4890 39 1 3.0510 -5.2156 2.6492 40 1 2.1387 -6.6478 2.1153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088514833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:52 Heat of formation + Delta-G solvation = 7.565529 kcal Electronic energy + Delta-G solvation = -21574.078265 eV Core-core repulsion = 18389.080740 eV Total energy + Delta-G solvation = -3184.997525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11265 -40.52038 -38.91137 -35.52521 -33.84849 -32.39822 -32.14087 -31.85892 -30.30936 -27.46219 -26.35057 -25.79281 -23.47724 -21.99118 -21.66885 -21.27397 -20.22765 -18.70895 -18.51127 -17.33255 -16.88984 -16.57313 -16.06247 -15.69378 -15.48554 -15.04215 -14.73841 -14.40083 -14.25090 -13.97357 -13.94382 -13.67695 -13.51895 -13.37823 -13.21664 -12.92197 -12.69210 -12.58069 -12.43837 -12.20601 -12.06846 -11.99524 -11.55442 -11.41206 -10.80329 -10.69731 -10.01224 -9.66391 -9.06197 -8.87860 -7.72174 -5.17623 0.80123 1.49621 1.52958 1.59066 1.59742 2.15525 2.50395 2.62062 2.63920 3.37862 3.61666 3.89612 3.97213 4.00114 4.11519 4.25095 4.33933 4.38251 4.51729 4.64556 4.69358 4.72983 4.75764 4.82767 4.96409 5.03079 5.07690 5.11484 5.16103 5.33058 5.41574 5.51729 5.61817 5.70756 5.81831 5.84224 6.03303 6.32427 6.68000 6.79516 7.13215 7.43150 7.80939 8.45371 9.29588 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.003743 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.607311 B = 7479.310100 C = 7711.695732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.099 3.901 3 N -0.538 5.538 4 H 0.434 0.566 5 C -0.001 4.001 6 C -0.189 4.189 7 C -0.270 4.270 8 C 0.584 3.416 9 O -0.591 6.591 10 N -0.703 5.703 11 C 0.155 3.845 12 H 0.078 0.922 13 C -0.138 4.138 14 C 0.159 3.841 15 N -0.614 5.614 16 C -0.230 4.230 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.275 1.275 24 C 0.151 3.849 25 H 0.049 0.951 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.209 0.791 31 H 0.155 0.845 32 H 0.409 0.591 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.078 0.922 36 H -0.015 1.015 37 H 0.246 0.754 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 24.058 4.122 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 N -0.135 5.135 4 H 0.274 0.726 5 C -0.128 4.128 6 C -0.213 4.213 7 C -0.280 4.280 8 C 0.375 3.625 9 O -0.474 6.474 10 N -0.353 5.353 11 C 0.049 3.951 12 H 0.096 0.904 13 C -0.178 4.178 14 C 0.033 3.967 15 N -0.339 5.339 16 C -0.358 4.358 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.809 3.191 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.201 1.201 24 C 0.044 3.956 25 H 0.067 0.933 26 C -0.205 4.205 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.225 0.775 31 H 0.173 0.827 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.003 0.997 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.503 23.808 4.055 24.156 hybrid contribution 0.601 -0.966 -0.051 1.139 sum 0.098 22.842 4.004 23.190 Atomic orbital electron populations 1.20529 0.86561 1.04215 1.03668 1.20469 0.94299 0.86117 1.01206 1.41589 1.06001 1.08615 1.57288 0.72641 1.22292 0.86418 0.96167 1.07930 1.22302 0.95092 0.95042 1.08861 1.20192 0.95334 0.91007 1.21459 1.17836 0.84873 0.85216 0.74547 1.90691 1.18145 1.85168 1.53417 1.45625 1.10173 1.04581 1.74903 1.21663 0.97295 0.80155 0.96028 0.90368 1.23199 1.00887 0.97142 0.96585 1.21662 0.89502 0.91183 0.94335 1.44724 1.39317 1.15780 1.34063 1.19381 1.10601 0.93937 1.11914 0.89699 1.25627 1.01055 1.01049 0.98352 1.70048 1.38735 1.29830 1.21515 0.85123 0.78566 0.78594 0.76862 1.20592 1.22301 1.20071 1.21184 0.95946 0.87215 0.91227 0.93303 1.22108 1.00647 1.00848 0.96857 0.90135 0.88899 0.90889 0.77459 0.82742 0.75465 0.91414 0.91739 0.90399 0.99691 0.94447 0.93254 0.91377 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.88 71.24 0.70 -1.04 16 2 C 0.10 2.06 7.18 41.78 0.30 2.36 16 3 N -0.54 -6.83 5.90 -182.71 -1.08 -7.91 16 4 H 0.43 2.13 8.96 -92.71 -0.83 1.30 16 5 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 6 C -0.19 -3.69 10.56 23.62 0.25 -3.44 16 7 C -0.27 -7.09 6.29 -19.04 -0.12 -7.21 16 8 C 0.58 19.55 7.81 86.61 0.68 20.23 16 9 O -0.59 -23.57 14.46 -4.13 -0.06 -23.63 16 10 N -0.70 -22.57 5.17 -440.32 -2.28 -24.85 16 11 C 0.15 5.99 2.85 46.18 0.13 6.12 16 12 H 0.08 3.30 7.27 -2.38 -0.02 3.28 16 13 C -0.14 -5.87 6.77 31.98 0.22 -5.65 16 14 C 0.16 8.27 5.89 86.85 0.51 8.78 16 15 N -0.61 -31.80 3.13 -668.26 -2.09 -33.89 16 16 C -0.23 -12.77 9.87 84.03 0.83 -11.94 16 17 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 19 N -0.95 -57.57 10.09 21.65 0.22 -57.35 16 20 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.15 6.25 3.47 45.34 0.16 6.41 16 25 H 0.05 1.91 7.72 -2.39 -0.02 1.89 16 26 C -0.15 -5.53 9.15 71.98 0.66 -4.87 16 27 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.87 6.47 -2.39 -0.02 1.86 16 30 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.15 2.56 7.69 -2.91 -0.02 2.53 16 32 H 0.41 11.09 7.49 -92.71 -0.69 10.39 16 33 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.08 4.55 5.87 -2.39 -0.01 4.54 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.97 327.40 2.04 -71.93 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.46 Total: 20.51 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 5.77 Total: 7.29 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.23 Total: -124.00 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.97 2.04 -71.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088514833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.495 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds