Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39839 * 126.45996 * 2 1 4 4 C 1.35444 * 107.86553 * 180.26363 * 3 2 1 5 5 N 1.35531 * 108.87225 * 359.74072 * 4 3 2 6 6 H 0.97004 * 125.67474 * 179.97438 * 5 4 3 7 7 C 1.37643 * 108.64481 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23587 * 180.02562 * 7 5 4 9 9 O 1.21692 * 120.00379 * 180.02562 * 8 7 5 10 10 N 1.34783 * 120.00073 * 0.02562 * 8 7 5 11 11 C 1.46497 * 120.00261 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46838 * 60.00071 * 20 18 16 22 22 H 1.48501 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46682 * 300.00202 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.08995 * 109.47065 * 270.18111 * 1 2 3 28 28 H 1.09007 * 109.47109 * 30.18181 * 1 2 3 29 29 H 1.08996 * 109.47091 * 150.17830 * 1 2 3 30 30 H 1.08004 * 126.06590 * 0.02562 * 3 2 1 31 31 H 1.08002 * 125.56606 * 179.75922 * 4 3 2 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6283 -0.6625 -0.0039 6 1 4.4191 -1.2244 -0.0074 7 6 2.3263 -1.1089 0.0029 8 6 1.8899 -2.5092 0.0077 9 8 0.7027 -2.7765 0.0132 10 7 2.8037 -3.4999 0.0060 11 6 2.3678 -4.8985 0.0102 12 1 1.4275 -5.0089 0.5504 13 6 2.2347 -5.4364 -1.4390 14 6 2.4569 -6.9550 -1.2289 15 7 3.4871 -7.0437 -0.1781 16 6 4.3329 -8.1017 0.0229 17 1 5.0568 -8.0699 0.8239 18 6 4.2598 -9.2153 -0.8025 19 7 3.3778 -9.2542 -1.7787 20 14 5.4132 -10.6589 -0.5279 21 1 5.2024 -11.2084 0.8354 22 1 5.1349 -11.7135 -1.5357 23 1 6.8194 -10.2020 -0.6656 24 6 3.4566 -5.8079 0.6178 25 1 4.4253 -5.3107 0.5677 26 6 3.1141 -6.1343 2.0728 27 1 -0.3633 0.0032 1.0276 28 1 -0.3634 0.8884 -0.5167 29 1 -0.3633 -0.8915 -0.5110 30 1 2.0137 2.1549 0.0004 31 1 4.4973 1.3252 -0.0111 32 1 3.7500 -3.2868 0.0020 33 1 3.0050 -5.0145 -2.0846 34 1 1.2406 -5.2387 -1.8400 35 1 2.8131 -7.4172 -2.1494 36 1 1.5342 -7.4309 -0.8967 37 1 3.3269 -10.0322 -2.3558 38 1 3.8845 -6.7823 2.4908 39 1 3.0633 -5.2111 2.6500 40 1 2.1505 -6.6423 2.1141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088547964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = 30.360934 kcal Electronic energy + Delta-G solvation = -21626.317951 eV Core-core repulsion = 18442.308910 eV Total energy + Delta-G solvation = -3184.009042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39874 -39.22502 -37.44329 -34.19486 -32.61970 -31.98665 -30.44574 -29.87376 -28.53338 -26.91409 -24.79298 -24.02288 -22.21892 -20.84108 -20.17298 -20.06076 -18.94595 -18.44271 -16.81692 -15.99703 -15.53791 -15.16171 -14.75752 -14.07198 -13.93388 -13.80724 -13.68040 -13.45649 -13.02725 -12.77971 -12.66389 -12.30558 -12.15968 -11.96424 -11.63227 -11.58179 -11.17628 -10.87877 -10.86119 -10.60082 -10.45167 -10.15244 -9.79573 -9.73106 -9.58272 -8.89006 -8.76218 -8.67075 -8.20108 -6.91145 -5.68428 -3.11761 1.45266 2.63691 2.99067 3.30673 3.37643 3.42337 3.43594 3.47391 4.45308 4.86673 4.88922 5.10215 5.20227 5.31347 5.38819 5.51085 5.59299 5.68002 5.78981 5.83785 5.87290 6.07351 6.08594 6.20056 6.26196 6.30281 6.36283 6.49535 6.54855 6.64452 6.69541 6.83514 6.87490 7.07861 7.25530 7.48999 7.58647 7.69131 7.82157 8.30905 8.36049 9.17247 9.78122 10.41935 11.34708 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.003779 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.148810 B = 7407.741840 C = 7640.895145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.079 4.079 3 C -0.213 4.213 4 C 0.021 3.979 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.054 4.054 8 C 0.586 3.414 9 O -0.528 6.528 10 N -0.717 5.717 11 C 0.136 3.864 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.156 3.844 25 H 0.033 0.967 26 C -0.155 4.155 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.390 0.610 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.015 0.985 37 H 0.253 0.747 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 18.669 3.156 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.238 4.238 4 C -0.115 4.115 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.167 4.167 8 C 0.373 3.627 9 O -0.405 6.405 10 N -0.366 5.366 11 C 0.032 3.968 12 H 0.115 0.885 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.050 0.950 26 C -0.215 4.215 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.159 0.841 31 H 0.187 0.813 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.144 18.071 3.056 18.328 hybrid contribution 1.609 -0.830 0.225 1.825 sum 1.465 17.241 3.281 17.612 Atomic orbital electron populations 1.20337 0.89358 1.02860 1.02131 1.19954 0.95909 0.90773 1.02088 1.20783 0.91874 0.98718 1.12424 1.21967 0.99502 0.83006 1.07047 1.41981 1.07293 1.07279 1.57120 0.74634 1.20381 0.83628 0.93828 1.18831 1.17034 0.86063 0.82872 0.76698 1.90801 1.15980 1.83184 1.50544 1.45971 1.08829 1.06750 1.75069 1.22178 0.98599 0.77935 0.98118 0.88541 1.23407 1.00690 1.00299 0.94884 1.21959 0.90948 0.88617 0.95707 1.44483 1.39907 1.14673 1.32949 1.18973 1.10686 0.93301 1.12165 0.90535 1.24789 0.99207 0.98323 0.98149 1.69785 1.37016 1.29636 1.20416 0.86158 0.80104 0.81998 0.77243 1.21195 1.21547 1.21203 1.20985 0.94564 0.88703 0.91020 0.94984 1.22239 1.01987 0.99733 0.97524 0.91650 0.92201 0.90024 0.84126 0.81348 0.77660 0.92109 0.91863 0.87299 0.96662 0.93599 0.92694 0.94384 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.83 36.01 0.35 -0.73 16 2 C -0.08 -1.01 6.21 -104.16 -0.65 -1.65 16 3 C -0.21 -2.17 10.76 -39.98 -0.43 -2.60 16 4 C 0.02 0.17 11.89 -16.91 -0.20 -0.03 16 5 N -0.54 -5.18 5.99 -9.39 -0.06 -5.24 16 6 H 0.42 2.89 8.19 -40.82 -0.33 2.56 16 7 C -0.05 -0.71 7.06 -81.99 -0.58 -1.29 16 8 C 0.59 9.27 7.79 -12.85 -0.10 9.17 16 9 O -0.53 -10.01 14.45 5.20 0.08 -9.94 16 10 N -0.72 -10.66 5.17 -53.33 -0.28 -10.94 16 11 C 0.14 2.48 2.85 -66.10 -0.19 2.29 16 12 H 0.10 1.90 7.27 -51.93 -0.38 1.52 16 13 C -0.15 -3.04 6.77 -24.59 -0.17 -3.20 16 14 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 15 N -0.59 -14.69 3.13 -162.57 -0.51 -15.20 16 16 C -0.22 -6.01 9.87 -15.06 -0.15 -6.16 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.16 3.09 3.47 -66.95 -0.23 2.86 16 25 H 0.03 0.62 7.72 -51.93 -0.40 0.22 16 26 C -0.16 -2.89 9.15 37.16 0.34 -2.55 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.16 6.49 -51.93 -0.34 0.82 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.39 4.74 7.50 -40.82 -0.31 4.43 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -31.93 327.02 -8.24 -40.17 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.83 Total: 5.98 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.11 Total: -0.55 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.28 Total: -57.25 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.93 -8.24 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088547964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.526 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds