Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39839 * 126.45996 * 2 1 4 4 C 1.35444 * 107.86553 * 180.26363 * 3 2 1 5 5 N 1.35531 * 108.87225 * 359.74072 * 4 3 2 6 6 H 0.97004 * 125.67474 * 179.97438 * 5 4 3 7 7 C 1.37643 * 108.64481 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23587 * 180.02562 * 7 5 4 9 9 O 1.21692 * 120.00379 * 180.02562 * 8 7 5 10 10 N 1.34783 * 120.00073 * 0.02562 * 8 7 5 11 11 C 1.46497 * 120.00261 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46838 * 60.00071 * 20 18 16 22 22 H 1.48501 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46682 * 300.00202 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.08995 * 109.47065 * 270.18111 * 1 2 3 28 28 H 1.09007 * 109.47109 * 30.18181 * 1 2 3 29 29 H 1.08996 * 109.47091 * 150.17830 * 1 2 3 30 30 H 1.08004 * 126.06590 * 0.02562 * 3 2 1 31 31 H 1.08002 * 125.56606 * 179.75922 * 4 3 2 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6283 -0.6625 -0.0039 6 1 4.4191 -1.2244 -0.0074 7 6 2.3263 -1.1089 0.0029 8 6 1.8899 -2.5092 0.0077 9 8 0.7027 -2.7765 0.0132 10 7 2.8037 -3.4999 0.0060 11 6 2.3678 -4.8985 0.0102 12 1 1.4275 -5.0089 0.5504 13 6 2.2347 -5.4364 -1.4390 14 6 2.4569 -6.9550 -1.2289 15 7 3.4871 -7.0437 -0.1781 16 6 4.3329 -8.1017 0.0229 17 1 5.0568 -8.0699 0.8239 18 6 4.2598 -9.2153 -0.8025 19 7 3.3778 -9.2542 -1.7787 20 14 5.4132 -10.6589 -0.5279 21 1 5.2024 -11.2084 0.8354 22 1 5.1349 -11.7135 -1.5357 23 1 6.8194 -10.2020 -0.6656 24 6 3.4566 -5.8079 0.6178 25 1 4.4253 -5.3107 0.5677 26 6 3.1141 -6.1343 2.0728 27 1 -0.3633 0.0032 1.0276 28 1 -0.3634 0.8884 -0.5167 29 1 -0.3633 -0.8915 -0.5110 30 1 2.0137 2.1549 0.0004 31 1 4.4973 1.3252 -0.0111 32 1 3.7500 -3.2868 0.0020 33 1 3.0050 -5.0145 -2.0846 34 1 1.2406 -5.2387 -1.8400 35 1 2.8131 -7.4172 -2.1494 36 1 1.5342 -7.4309 -0.8967 37 1 3.3269 -10.0322 -2.3558 38 1 3.8845 -6.7823 2.4908 39 1 3.0633 -5.2111 2.6500 40 1 2.1505 -6.6423 2.1141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088547964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = 9.137297 kcal Electronic energy + Delta-G solvation = -21627.238277 eV Core-core repulsion = 18442.308910 eV Total energy + Delta-G solvation = -3184.929368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26877 -40.56680 -39.00626 -35.71980 -34.02813 -33.28773 -32.11110 -31.06683 -30.05316 -27.93622 -26.41262 -25.83222 -23.36342 -22.08592 -21.64930 -21.45814 -20.01508 -19.47521 -18.71837 -17.46779 -16.69913 -16.55706 -16.24748 -15.76185 -15.47295 -14.95387 -14.78257 -14.53769 -14.37869 -14.04087 -13.84424 -13.67376 -13.56467 -13.27290 -13.14247 -12.96430 -12.72818 -12.62823 -12.51637 -12.26687 -12.13972 -12.04309 -11.59906 -11.47281 -11.00306 -10.73330 -10.13812 -9.66482 -9.08825 -8.91736 -7.75574 -5.21189 0.49025 1.47946 1.50815 1.57067 1.87167 2.02685 2.28637 2.35736 2.51886 3.34761 3.54653 3.81700 3.91227 3.94466 4.17702 4.28588 4.29692 4.42537 4.45885 4.58976 4.63306 4.77606 4.89883 4.90709 4.91787 5.01017 5.03407 5.08729 5.20950 5.31292 5.48237 5.48873 5.56557 5.57858 5.78309 5.81248 6.01385 6.29034 6.49194 6.65230 7.09763 7.16333 7.77429 8.41105 9.26094 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.003779 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.148810 B = 7407.741840 C = 7640.895145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.093 4.093 3 C -0.230 4.230 4 C 0.050 3.950 5 N -0.531 5.531 6 H 0.429 0.571 7 C -0.088 4.088 8 C 0.586 3.414 9 O -0.569 6.569 10 N -0.705 5.705 11 C 0.154 3.846 12 H 0.081 0.919 13 C -0.139 4.139 14 C 0.158 3.842 15 N -0.613 5.613 16 C -0.230 4.230 17 H 0.086 0.914 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.152 3.848 25 H 0.052 0.948 26 C -0.147 4.147 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.162 0.838 31 H 0.215 0.785 32 H 0.406 0.594 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.079 0.921 36 H -0.015 1.015 37 H 0.246 0.754 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 21.291 4.104 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.254 4.254 4 C -0.087 4.087 5 N -0.128 5.128 6 H 0.269 0.731 7 C -0.201 4.201 8 C 0.375 3.625 9 O -0.449 6.449 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.100 0.900 13 C -0.178 4.178 14 C 0.032 3.968 15 N -0.338 5.338 16 C -0.359 4.359 17 H 0.104 0.896 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.200 1.200 24 C 0.045 3.955 25 H 0.069 0.931 26 C -0.206 4.206 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.179 0.821 31 H 0.231 0.769 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.003 0.997 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.110 20.724 4.032 21.218 hybrid contribution 0.924 -1.507 -0.048 1.768 sum 3.035 19.218 3.985 19.860 Atomic orbital electron populations 1.20306 0.89796 1.02493 1.02027 1.20281 0.96226 0.91911 1.01831 1.21107 0.92191 0.99032 1.13064 1.22722 1.00472 0.82546 1.02936 1.41987 1.06443 1.08049 1.56292 0.73106 1.19968 0.85525 0.92244 1.22338 1.17406 0.85478 0.83958 0.75613 1.90782 1.17687 1.83971 1.52419 1.45693 1.09736 1.05072 1.75067 1.21726 0.97580 0.79598 0.96285 0.90050 1.23204 1.01070 0.97174 0.96379 1.21671 0.89574 0.91163 0.94370 1.44713 1.39485 1.15757 1.33894 1.19365 1.10746 0.93930 1.11870 0.89644 1.25618 1.00995 1.01029 0.98328 1.70038 1.38752 1.29865 1.21385 0.85138 0.78593 0.78647 0.76859 1.20623 1.22360 1.20029 1.21180 0.95862 0.87248 0.91188 0.93064 1.22126 1.00725 1.00921 0.96845 0.91658 0.90125 0.92739 0.82051 0.76855 0.75744 0.91216 0.91643 0.90357 0.99673 0.94415 0.93215 0.91312 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.83 71.24 0.70 -1.43 16 2 C -0.09 -2.23 6.21 -19.56 -0.12 -2.36 16 3 C -0.23 -3.89 10.76 22.01 0.24 -3.65 16 4 C 0.05 0.62 11.89 83.48 0.99 1.61 16 5 N -0.53 -8.32 5.99 -183.64 -1.10 -9.42 16 6 H 0.43 4.31 8.19 -92.70 -0.76 3.55 16 7 C -0.09 -2.19 7.06 40.35 0.28 -1.91 16 8 C 0.59 18.16 7.79 86.45 0.67 18.84 16 9 O -0.57 -21.99 14.45 -4.32 -0.06 -22.06 16 10 N -0.71 -20.00 5.17 -440.87 -2.28 -22.28 16 11 C 0.15 5.55 2.85 46.18 0.13 5.68 16 12 H 0.08 3.24 7.27 -2.38 -0.02 3.22 16 13 C -0.14 -5.56 6.77 31.98 0.22 -5.34 16 14 C 0.16 7.94 5.89 86.85 0.51 8.45 16 15 N -0.61 -30.56 3.13 -668.26 -2.09 -32.65 16 16 C -0.23 -12.44 9.87 84.03 0.83 -11.61 16 17 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 19 N -0.95 -56.41 10.09 21.65 0.22 -56.19 16 20 Si 0.98 44.92 29.55 68.60 2.03 46.94 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.15 5.90 3.47 45.34 0.16 6.06 16 25 H 0.05 1.83 7.72 -2.39 -0.02 1.81 16 26 C -0.15 -5.29 9.15 71.98 0.66 -4.63 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.05 1.59 6.49 -2.39 -0.02 1.58 16 30 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.41 8.84 7.50 -92.71 -0.69 8.15 16 33 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.08 4.45 5.87 -2.39 -0.01 4.43 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -71.76 327.02 2.05 -69.71 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.39 Total: 19.52 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.74 Total: 6.43 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -5.25 Total: -120.55 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.76 2.05 -69.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088547964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.844 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds