Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34482 * 126.83248 * 2 1 4 4 N 1.36457 * 108.85423 * 180.25214 * 3 2 1 5 5 H 0.96998 * 124.84954 * 179.76846 * 4 3 2 6 6 C 1.34662 * 110.29368 * 359.74744 * 4 3 2 7 7 C 1.36766 * 108.40093 * 0.02562 * 6 4 3 8 8 C 1.47255 * 126.94342 * 179.97438 * 7 6 4 9 9 O 1.21631 * 120.00168 * 180.02562 * 8 7 6 10 10 N 1.34783 * 120.00175 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00261 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46921 * 90.00141 * 20 18 16 22 22 H 1.48499 * 109.46928 * 210.00543 * 20 18 16 23 23 H 1.48495 * 109.46772 * 330.00097 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.08994 * 109.47241 * 270.15012 * 1 2 3 28 28 H 1.09000 * 109.47095 * 30.15196 * 1 2 3 29 29 H 1.08997 * 109.47082 * 150.14908 * 1 2 3 30 30 H 1.07996 * 125.57712 * 0.03505 * 3 2 1 31 31 H 1.07999 * 125.79341 * 179.97438 * 6 4 3 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6112 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1741 0.0026 8 6 1.9749 -2.5880 0.0060 9 8 0.7936 -2.8776 0.0113 10 7 2.9073 -3.5613 0.0034 11 6 2.4980 -4.9679 0.0074 12 1 1.5603 -5.0963 0.5483 13 6 2.3740 -5.5077 -1.4419 14 6 2.6251 -7.0219 -1.2325 15 7 3.6575 -7.0915 -0.1824 16 6 4.5235 -8.1333 0.0176 17 1 5.2471 -8.0880 0.8180 18 6 4.4708 -9.2478 -0.8081 19 7 3.5890 -9.3031 -1.7837 20 14 5.6515 -10.6694 -0.5349 21 1 5.0426 -11.6450 0.4046 22 1 5.9298 -11.3379 -1.8314 23 1 6.9208 -10.1552 0.0393 24 6 3.6042 -5.8567 0.6139 25 1 4.5633 -5.3413 0.5632 26 6 3.2690 -6.1900 2.0690 27 1 -0.3633 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 1.9869 2.1058 0.0005 31 1 4.5664 -1.2860 -0.0077 32 1 3.8494 -3.3303 -0.0005 33 1 3.1358 -5.0711 -2.0879 34 1 1.3761 -5.3288 -1.8421 35 1 2.9894 -7.4770 -2.1534 36 1 1.7119 -7.5153 -0.8998 37 1 3.5524 -10.0817 -2.3610 38 1 4.0519 -6.8234 2.4863 39 1 3.2012 -5.2681 2.6466 40 1 2.3153 -6.7161 2.1109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089036727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = 30.889210 kcal Electronic energy + Delta-G solvation = -21542.841994 eV Core-core repulsion = 18358.855860 eV Total energy + Delta-G solvation = -3183.986134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23907 -39.10327 -37.28578 -33.90306 -32.46127 -32.04607 -30.37547 -29.91843 -28.30782 -26.59520 -24.85646 -23.94574 -22.57874 -20.35124 -19.93665 -19.77601 -18.84567 -18.32530 -16.72355 -16.14395 -15.51910 -14.90168 -14.65865 -14.07128 -13.94767 -13.80442 -13.55092 -13.42453 -13.00729 -12.70172 -12.64607 -12.35986 -12.07914 -11.85826 -11.50575 -11.40141 -11.08774 -10.83576 -10.78933 -10.47044 -10.33376 -10.06863 -9.68465 -9.55808 -9.42893 -8.76000 -8.63025 -8.41861 -8.35182 -6.83617 -5.62308 -3.05131 1.77186 2.33360 3.06782 3.41096 3.45455 3.47863 3.61918 3.79241 4.51003 4.74002 4.93204 5.04280 5.29437 5.38650 5.46265 5.59652 5.62909 5.71314 5.74820 5.86325 5.91818 6.06724 6.19437 6.24604 6.33350 6.39500 6.45389 6.62519 6.69712 6.74804 6.79893 6.81259 6.94882 7.21659 7.30006 7.57586 7.65968 7.89137 7.96937 8.38655 8.68658 9.23819 9.84875 10.49407 11.40820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036090 B = 0.003726 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.658562 B = 7513.733818 C = 7746.429824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.044 3.956 7 C -0.221 4.221 8 C 0.586 3.414 9 O -0.546 6.546 10 N -0.716 5.716 11 C 0.137 3.863 12 H 0.093 0.907 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.596 5.596 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.155 3.845 25 H 0.034 0.966 26 C -0.155 4.155 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.393 0.607 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.014 0.986 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 20.623 3.210 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.092 4.092 7 C -0.232 4.232 8 C 0.374 3.626 9 O -0.424 6.424 10 N -0.366 5.366 11 C 0.033 3.967 12 H 0.111 0.889 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.321 5.321 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.047 3.953 25 H 0.051 0.949 26 C -0.214 4.214 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.172 20.277 3.112 20.515 hybrid contribution 1.528 -0.391 0.220 1.592 sum 1.355 19.887 3.332 20.209 Atomic orbital electron populations 1.20191 0.89383 1.02569 1.01902 1.20579 0.95665 0.90410 1.04976 1.21542 0.82497 0.99108 1.12684 1.41464 1.08218 1.06677 1.58241 0.74796 1.21956 0.98687 0.83797 1.04772 1.20501 0.92592 0.93131 1.16945 1.17373 0.85566 0.83849 0.75836 1.90730 1.17231 1.83714 1.50754 1.45901 1.09049 1.06309 1.75299 1.22094 0.98523 0.78322 0.97792 0.88851 1.23392 1.00572 1.00134 0.95159 1.21948 0.90802 0.88847 0.95640 1.44500 1.38919 1.15626 1.33040 1.19025 1.09745 0.94032 1.11992 0.90508 1.24783 0.99258 0.98346 0.98231 1.69806 1.37136 1.29444 1.20516 0.86091 0.80198 0.82376 0.76926 1.21668 1.21709 1.20766 1.20996 0.94648 0.88759 0.90906 0.94859 1.22233 1.01837 0.99712 0.97656 0.91911 0.92579 0.90149 0.81593 0.81103 0.77314 0.92102 0.92026 0.87407 0.96791 0.93733 0.92823 0.94323 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.97 36.01 0.36 -0.63 16 2 C -0.11 -1.36 6.35 -102.54 -0.65 -2.01 16 3 C -0.03 -0.28 11.82 -16.82 -0.20 -0.47 16 4 N -0.55 -4.10 5.90 -12.85 -0.08 -4.17 16 5 H 0.42 1.55 8.96 -40.82 -0.37 1.18 16 6 C 0.04 0.42 11.40 -16.84 -0.19 0.23 16 7 C -0.22 -2.99 6.29 -103.35 -0.65 -3.64 16 8 C 0.59 9.77 7.81 -12.59 -0.10 9.67 16 9 O -0.55 -11.00 14.97 5.25 0.08 -10.92 16 10 N -0.72 -11.23 5.17 -53.15 -0.27 -11.50 16 11 C 0.14 2.61 2.85 -66.10 -0.19 2.42 16 12 H 0.09 1.92 7.27 -51.93 -0.38 1.54 16 13 C -0.15 -3.14 6.77 -24.59 -0.17 -3.30 16 14 C 0.15 3.79 5.89 -2.53 -0.01 3.77 16 15 N -0.60 -15.01 3.13 -162.57 -0.51 -15.52 16 16 C -0.22 -6.01 9.87 -15.06 -0.15 -6.16 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.16 3.17 3.47 -66.95 -0.23 2.94 16 25 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 26 C -0.15 -2.96 9.15 37.16 0.34 -2.62 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.15 6.86 -51.93 -0.36 0.80 16 30 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.17 1.16 7.45 -52.49 -0.39 0.77 16 32 H 0.39 5.06 7.31 -40.82 -0.30 4.76 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -33.66 327.91 -8.08 -41.74 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.84 Total: 4.93 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.94 Total: -0.19 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.30 Total: -57.45 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.66 -8.08 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089036727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.632 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds