Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34482 * 126.83248 * 2 1 4 4 N 1.36457 * 108.85423 * 180.25214 * 3 2 1 5 5 H 0.96998 * 124.84954 * 179.76846 * 4 3 2 6 6 C 1.34662 * 110.29368 * 359.74744 * 4 3 2 7 7 C 1.36766 * 108.40093 * 0.02562 * 6 4 3 8 8 C 1.47255 * 126.94342 * 179.97438 * 7 6 4 9 9 O 1.21631 * 120.00168 * 180.02562 * 8 7 6 10 10 N 1.34783 * 120.00175 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00261 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36940 * 125.64770 * 204.16150 * 15 14 13 17 17 H 1.08002 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00034 * 359.95483 * 16 15 14 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46921 * 90.00141 * 20 18 16 22 22 H 1.48499 * 109.46928 * 210.00543 * 20 18 16 23 23 H 1.48495 * 109.46772 * 330.00097 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 H 1.08994 * 109.47241 * 270.15012 * 1 2 3 28 28 H 1.09000 * 109.47095 * 30.15196 * 1 2 3 29 29 H 1.08997 * 109.47082 * 150.14908 * 1 2 3 30 30 H 1.07996 * 125.57712 * 0.03505 * 3 2 1 31 31 H 1.07999 * 125.79341 * 179.97438 * 6 4 3 32 32 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 34 34 H 1.08997 * 111.03848 * 271.95838 * 13 11 10 35 35 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 36 36 H 1.09004 * 110.36385 * 81.82593 * 14 13 11 37 37 H 0.97003 * 120.00193 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 39 39 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 40 40 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6112 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1741 0.0026 8 6 1.9749 -2.5880 0.0060 9 8 0.7936 -2.8776 0.0113 10 7 2.9073 -3.5613 0.0034 11 6 2.4980 -4.9679 0.0074 12 1 1.5603 -5.0963 0.5483 13 6 2.3740 -5.5077 -1.4419 14 6 2.6251 -7.0219 -1.2325 15 7 3.6575 -7.0915 -0.1824 16 6 4.5235 -8.1333 0.0176 17 1 5.2471 -8.0880 0.8180 18 6 4.4708 -9.2478 -0.8081 19 7 3.5890 -9.3031 -1.7837 20 14 5.6515 -10.6694 -0.5349 21 1 5.0426 -11.6450 0.4046 22 1 5.9298 -11.3379 -1.8314 23 1 6.9208 -10.1552 0.0393 24 6 3.6042 -5.8567 0.6139 25 1 4.5633 -5.3413 0.5632 26 6 3.2690 -6.1900 2.0690 27 1 -0.3633 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 1.9869 2.1058 0.0005 31 1 4.5664 -1.2860 -0.0077 32 1 3.8494 -3.3303 -0.0005 33 1 3.1358 -5.0711 -2.0879 34 1 1.3761 -5.3288 -1.8421 35 1 2.9894 -7.4770 -2.1534 36 1 1.7119 -7.5153 -0.8998 37 1 3.5524 -10.0817 -2.3610 38 1 4.0519 -6.8234 2.4863 39 1 3.2012 -5.2681 2.6466 40 1 2.3153 -6.7161 2.1109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089036727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 7.751955 kcal Electronic energy + Delta-G solvation = -21543.845301 eV Core-core repulsion = 18358.855860 eV Total energy + Delta-G solvation = -3184.989441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03871 -40.51596 -38.90333 -35.53229 -33.84742 -33.28190 -32.06624 -31.18295 -29.91567 -27.39802 -26.52702 -25.81465 -23.76369 -22.02425 -21.51186 -20.82084 -19.97992 -19.09742 -18.67460 -17.48190 -16.96427 -16.51603 -15.96377 -15.71197 -15.39209 -14.92873 -14.79005 -14.45071 -14.33977 -14.03445 -13.88876 -13.63367 -13.54035 -13.23911 -13.20131 -12.91199 -12.73830 -12.58864 -12.27693 -12.20067 -12.07171 -11.95479 -11.55622 -11.41399 -10.81132 -10.71038 -9.99994 -9.47416 -9.12528 -8.88128 -7.72548 -5.17965 0.84834 1.49571 1.51552 1.55187 1.59886 2.24029 2.50281 2.57117 2.64679 3.37839 3.61505 3.89705 3.99880 4.05340 4.12443 4.25353 4.35292 4.51062 4.52040 4.64850 4.69832 4.76198 4.84009 4.94291 4.96894 4.98979 5.08089 5.16136 5.20858 5.36073 5.42010 5.51982 5.61594 5.70472 5.81751 5.88279 6.01661 6.32130 6.72095 6.80085 7.12876 7.45196 7.80765 8.45088 9.29424 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036090 B = 0.003726 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.658562 B = 7513.733818 C = 7746.429824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.152 4.152 3 C -0.008 4.008 4 N -0.532 5.532 5 H 0.438 0.562 6 C 0.069 3.931 7 C -0.269 4.269 8 C 0.583 3.417 9 O -0.592 6.592 10 N -0.704 5.704 11 C 0.154 3.846 12 H 0.075 0.925 13 C -0.138 4.138 14 C 0.158 3.842 15 N -0.614 5.614 16 C -0.227 4.227 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.152 3.848 25 H 0.054 0.946 26 C -0.146 4.146 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.203 0.797 31 H 0.203 0.797 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.078 0.922 36 H -0.017 1.017 37 H 0.245 0.755 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 23.500 4.162 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.137 4.137 4 N -0.127 5.127 5 H 0.279 0.721 6 C -0.069 4.069 7 C -0.279 4.279 8 C 0.374 3.626 9 O -0.474 6.474 10 N -0.355 5.355 11 C 0.048 3.952 12 H 0.093 0.907 13 C -0.178 4.178 14 C 0.033 3.967 15 N -0.339 5.339 16 C -0.356 4.356 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.190 1.190 24 C 0.045 3.955 25 H 0.072 0.928 26 C -0.206 4.206 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.220 0.780 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.001 0.999 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.366 23.228 4.093 23.705 hybrid contribution 0.758 -1.170 -0.056 1.395 sum 3.124 22.058 4.037 22.641 Atomic orbital electron populations 1.20099 0.90094 1.01976 1.01474 1.20807 0.95951 0.91416 1.07652 1.21964 0.82345 0.99724 1.09619 1.41527 1.08774 1.06310 1.56116 0.72103 1.22299 0.98148 0.84787 1.01684 1.20375 0.94888 0.91435 1.21237 1.17928 0.84880 0.85258 0.74549 1.90705 1.19211 1.84560 1.52942 1.45645 1.09986 1.04562 1.75268 1.21644 0.97410 0.80159 0.95951 0.90730 1.23194 1.00809 0.97151 0.96657 1.21659 0.89451 0.91247 0.94365 1.44736 1.38478 1.16737 1.33935 1.19420 1.09834 0.94596 1.11726 0.89550 1.25627 1.01143 1.01021 0.98389 1.70057 1.38895 1.29737 1.21500 0.85056 0.78744 0.79080 0.76319 1.21830 1.22298 1.19006 1.21189 0.95905 0.87294 0.91069 0.92793 1.22121 1.00587 1.00888 0.96974 0.92351 0.90101 0.93703 0.78059 0.78020 0.75309 0.91094 0.92062 0.90381 0.99928 0.94487 0.93179 0.91275 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 9.97 71.24 0.71 -1.16 16 2 C -0.15 -3.51 6.35 -18.51 -0.12 -3.63 16 3 C -0.01 -0.12 11.82 83.11 0.98 0.87 16 4 N -0.53 -5.38 5.90 -194.56 -1.15 -6.52 16 5 H 0.44 0.83 8.96 -92.71 -0.83 0.00 16 6 C 0.07 1.06 11.40 83.91 0.96 2.02 16 7 C -0.27 -6.82 6.29 -19.04 -0.12 -6.94 16 8 C 0.58 19.27 7.81 86.61 0.68 19.95 16 9 O -0.59 -24.75 14.97 -4.13 -0.06 -24.81 16 10 N -0.70 -21.14 5.17 -440.32 -2.28 -23.41 16 11 C 0.15 5.84 2.85 46.18 0.13 5.97 16 12 H 0.07 3.15 7.27 -2.38 -0.02 3.13 16 13 C -0.14 -5.78 6.77 31.98 0.22 -5.56 16 14 C 0.16 8.18 5.89 86.85 0.51 8.69 16 15 N -0.61 -31.22 3.13 -668.26 -2.09 -33.31 16 16 C -0.23 -12.42 9.87 84.03 0.83 -11.59 16 17 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 19 N -0.95 -57.26 10.09 21.65 0.22 -57.04 16 20 Si 0.98 45.44 29.55 68.60 2.03 47.46 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.15 6.08 3.47 45.34 0.16 6.24 16 25 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 26 C -0.15 -5.43 9.15 71.98 0.66 -4.77 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 30 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.20 1.70 7.45 -2.91 -0.02 1.68 16 32 H 0.41 9.39 7.31 -92.71 -0.68 8.72 16 33 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 4.52 5.87 -2.39 -0.01 4.51 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.02 327.91 2.28 -74.74 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.45 Total: 16.28 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.06 Total: 6.61 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -5.30 Total: -120.29 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.02 2.28 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089036727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.488 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds