Wall clock time and date at job start Mon Mar 30 2020 01:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34661 * 125.80307 * 2 1 4 4 H 0.96997 * 124.85111 * 0.03791 * 3 2 1 5 5 C 1.36448 * 110.29854 * 180.20187 * 3 2 1 6 6 C 1.34495 * 108.85510 * 359.55120 * 5 3 2 7 7 C 1.36773 * 125.80093 * 179.71752 * 2 1 3 8 8 C 1.47263 * 126.94146 * 359.95306 * 7 2 1 9 9 O 1.21623 * 119.99760 * 0.02562 * 8 7 2 10 10 N 1.34776 * 119.99727 * 179.97438 * 8 7 2 11 11 C 1.46503 * 119.99932 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47340 * 180.02562 * 11 10 8 13 13 C 1.53782 * 113.61223 * 274.14024 * 12 11 10 14 14 C 1.53958 * 87.01799 * 220.04848 * 13 12 11 15 15 N 1.46505 * 113.53587 * 270.81091 * 14 13 12 16 16 C 1.36938 * 120.00007 * 252.49534 * 15 14 13 17 17 H 1.07998 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99674 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99339 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47171 * 89.99936 * 20 18 16 22 22 H 1.48501 * 109.47004 * 209.99957 * 20 18 16 23 23 H 1.48499 * 109.46993 * 329.99801 * 20 18 16 24 24 C 1.53776 * 113.61308 * 176.53182 * 12 11 10 25 25 H 1.09002 * 109.46806 * 270.28494 * 1 2 3 26 26 H 1.08994 * 109.46823 * 30.28434 * 1 2 3 27 27 H 1.09000 * 109.46962 * 150.28763 * 1 2 3 28 28 H 1.08002 * 125.57515 * 179.82222 * 5 3 2 29 29 H 1.07997 * 126.82801 * 180.26810 * 6 5 3 30 30 H 0.96993 * 120.00270 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47221 * 300.00603 * 11 10 8 32 32 H 1.09005 * 109.46788 * 60.00175 * 11 10 8 33 33 H 1.08996 * 112.84808 * 45.33366 * 12 11 10 34 34 H 1.09007 * 113.61372 * 334.56295 * 13 12 11 35 35 H 1.08999 * 113.61690 * 105.46973 * 13 12 11 36 36 H 1.08998 * 113.74520 * 139.94569 * 14 13 12 37 37 H 0.96998 * 119.99838 * 72.49383 * 15 14 13 38 38 H 0.97002 * 119.99599 * 179.97438 * 19 18 16 39 39 H 1.08997 * 113.61372 * 254.52611 * 24 12 11 40 40 H 1.08998 * 113.61786 * 25.43388 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0074 0.0005 5 6 3.6096 0.7274 -0.0045 6 6 3.6882 -0.6152 0.0025 7 6 2.3071 -1.1093 0.0055 8 6 1.8702 -2.5156 0.0134 9 8 0.6839 -2.7838 0.0151 10 7 2.7850 -3.5054 0.0176 11 6 2.3504 -4.9044 0.0260 12 6 3.5766 -5.8194 0.0300 13 6 4.1298 -6.1142 -1.3743 14 6 4.3552 -7.5596 -0.8942 15 7 5.6672 -7.7736 -0.2784 16 6 6.6289 -8.4846 -0.9454 17 1 6.4199 -8.8880 -1.9252 18 6 7.8722 -8.6869 -0.3620 19 7 8.7962 -9.3708 -1.0029 20 14 8.2332 -7.9897 1.3329 21 1 7.8616 -8.9875 2.3680 22 1 9.6812 -7.6790 1.4422 23 1 7.4438 -6.7484 1.5360 24 6 3.2293 -7.3145 0.1241 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8926 -0.5094 28 1 4.4499 1.4059 -0.0082 29 1 4.5891 -1.2109 0.0053 30 1 3.7310 -3.2914 0.0158 31 1 1.7531 -5.0940 0.9179 32 1 1.7507 -5.1039 -0.8621 33 1 4.3388 -5.5025 0.7418 34 1 3.3838 -6.0280 -2.1644 35 1 5.0521 -5.5797 -1.6014 36 1 4.1108 -8.3137 -1.6423 37 1 5.8547 -7.4116 0.6017 38 1 9.6652 -9.5118 -0.5955 39 1 3.4259 -7.7474 1.1049 40 1 2.2368 -7.5569 -0.2555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090976999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:06 Heat of formation + Delta-G solvation = 34.364970 kcal Electronic energy + Delta-G solvation = -20730.341374 eV Core-core repulsion = 17546.505961 eV Total energy + Delta-G solvation = -3183.835414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43573 -39.36154 -38.33611 -34.61483 -33.20254 -31.76057 -31.38640 -30.55022 -27.74525 -26.32760 -25.12617 -23.64053 -22.46508 -21.57994 -20.80381 -19.64480 -18.41676 -17.87521 -17.63034 -16.14697 -15.80161 -15.41633 -14.97676 -14.61703 -14.28504 -14.03562 -13.76438 -13.46117 -13.32703 -13.18102 -12.94707 -12.78537 -12.68688 -12.43408 -11.99826 -11.79113 -11.51216 -11.31468 -10.89832 -10.46310 -10.22485 -10.10013 -9.75395 -9.63424 -9.47668 -9.13379 -8.91317 -8.83711 -8.37960 -7.29026 -5.79177 -3.15036 1.61588 2.21415 2.85815 3.35442 3.38590 3.43830 3.49513 3.56836 4.56712 4.58437 4.74628 4.93441 4.95154 5.02352 5.04979 5.18236 5.30648 5.39257 5.41666 5.49088 5.58860 5.64544 5.73404 5.80368 5.92024 5.97221 6.05198 6.17783 6.27891 6.48269 6.52100 6.58735 6.66977 6.69864 6.81396 6.93630 7.17156 7.70946 7.99310 8.40755 8.41667 9.18729 9.91038 10.10560 11.39055 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.003399 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.501594 B = 8234.581128 C = 8961.416085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.103 3.897 3 N -0.555 5.555 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.167 4.167 7 C -0.235 4.235 8 C 0.588 3.412 9 O -0.558 6.558 10 N -0.721 5.721 11 C 0.133 3.867 12 C -0.123 4.123 13 C -0.166 4.166 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.401 0.599 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 21.859 2.979 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.191 4.191 7 C -0.245 4.245 8 C 0.377 3.623 9 O -0.438 6.438 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.142 4.142 13 C -0.207 4.207 14 C 0.060 3.940 15 N -0.370 5.370 16 C -0.375 4.375 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.188 4.188 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.235 0.765 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.273 21.594 2.814 26.598 hybrid contribution 0.992 1.145 1.254 1.967 sum -14.282 22.739 4.068 27.158 Atomic orbital electron populations 1.20571 0.87018 1.04197 1.03404 1.20351 0.93721 0.85656 1.01808 1.41599 1.06299 1.08356 1.58785 0.74889 1.21732 0.85624 0.96504 1.10745 1.22104 0.95930 0.93749 1.07290 1.20192 0.93247 0.92215 1.18829 1.17346 0.85314 0.84099 0.75525 1.90710 1.16702 1.84564 1.51847 1.45819 1.09851 1.06179 1.75252 1.21416 0.96698 0.79148 1.01722 1.22741 0.96560 0.95074 0.99805 1.23875 1.00495 1.01717 0.94603 1.21052 0.85057 0.93975 0.93872 1.42524 1.10579 1.64679 1.19266 1.19122 0.91481 1.25482 1.01439 0.89028 1.24680 0.96214 1.00142 0.98073 1.69701 1.05264 1.44846 1.38210 0.86555 0.77334 0.78975 0.85686 1.21026 1.21696 1.20355 1.23452 0.99997 0.94127 1.01233 0.90512 0.91963 0.87941 0.81333 0.83606 0.76480 0.91941 0.91517 0.89313 0.90952 0.91369 0.91087 0.80522 0.93008 0.91474 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.88 36.01 0.36 -0.46 16 2 C 0.10 1.04 7.17 -81.88 -0.59 0.45 16 3 N -0.55 -4.02 5.90 -9.10 -0.05 -4.07 16 4 H 0.41 1.56 8.96 -40.82 -0.37 1.20 16 5 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 6 C -0.17 -1.68 10.56 -37.50 -0.40 -2.08 16 7 C -0.23 -2.88 6.29 -103.35 -0.65 -3.53 16 8 C 0.59 8.47 7.81 -12.59 -0.10 8.37 16 9 O -0.56 -9.39 14.81 5.26 0.08 -9.31 16 10 N -0.72 -9.47 5.55 -61.43 -0.34 -9.81 16 11 C 0.13 1.81 5.50 -4.04 -0.02 1.78 16 12 C -0.12 -1.78 3.62 -89.81 -0.33 -2.10 16 13 C -0.17 -2.69 7.44 -25.82 -0.19 -2.88 16 14 C 0.17 3.24 4.57 -67.02 -0.31 2.93 16 15 N -0.73 -16.99 5.11 -52.54 -0.27 -17.26 16 16 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 20 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 24 C -0.15 -2.26 7.39 -25.92 -0.19 -2.45 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 1.11 6.47 -51.93 -0.34 0.78 16 28 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.15 1.28 7.70 -52.49 -0.40 0.88 16 30 H 0.40 4.69 7.60 -40.82 -0.31 4.38 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.07 7.92 -51.92 -0.41 0.66 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.36 8.25 5.76 -40.82 -0.24 8.02 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -34.19 333.64 -8.23 -42.42 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.86 Total: 11.50 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.87 Total: -7.28 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.11 Total: -59.51 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.19 -8.23 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090976999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.783 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds