Wall clock time and date at job start Mon Mar 30 2020 01:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34661 * 125.80307 * 2 1 4 4 H 0.96997 * 124.85111 * 0.03791 * 3 2 1 5 5 C 1.36448 * 110.29854 * 180.20187 * 3 2 1 6 6 C 1.34495 * 108.85510 * 359.55120 * 5 3 2 7 7 C 1.36773 * 125.80093 * 179.71752 * 2 1 3 8 8 C 1.47263 * 126.94146 * 359.95306 * 7 2 1 9 9 O 1.21623 * 119.99760 * 0.02562 * 8 7 2 10 10 N 1.34776 * 119.99727 * 179.97438 * 8 7 2 11 11 C 1.46503 * 119.99932 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47340 * 180.02562 * 11 10 8 13 13 C 1.53782 * 113.61223 * 274.14024 * 12 11 10 14 14 C 1.53958 * 87.01799 * 220.04848 * 13 12 11 15 15 N 1.46505 * 113.53587 * 270.81091 * 14 13 12 16 16 C 1.36938 * 120.00007 * 252.49534 * 15 14 13 17 17 H 1.07998 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99674 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99339 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47171 * 89.99936 * 20 18 16 22 22 H 1.48501 * 109.47004 * 209.99957 * 20 18 16 23 23 H 1.48499 * 109.46993 * 329.99801 * 20 18 16 24 24 C 1.53776 * 113.61308 * 176.53182 * 12 11 10 25 25 H 1.09002 * 109.46806 * 270.28494 * 1 2 3 26 26 H 1.08994 * 109.46823 * 30.28434 * 1 2 3 27 27 H 1.09000 * 109.46962 * 150.28763 * 1 2 3 28 28 H 1.08002 * 125.57515 * 179.82222 * 5 3 2 29 29 H 1.07997 * 126.82801 * 180.26810 * 6 5 3 30 30 H 0.96993 * 120.00270 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47221 * 300.00603 * 11 10 8 32 32 H 1.09005 * 109.46788 * 60.00175 * 11 10 8 33 33 H 1.08996 * 112.84808 * 45.33366 * 12 11 10 34 34 H 1.09007 * 113.61372 * 334.56295 * 13 12 11 35 35 H 1.08999 * 113.61690 * 105.46973 * 13 12 11 36 36 H 1.08998 * 113.74520 * 139.94569 * 14 13 12 37 37 H 0.96998 * 119.99838 * 72.49383 * 15 14 13 38 38 H 0.97002 * 119.99599 * 179.97438 * 19 18 16 39 39 H 1.08997 * 113.61372 * 254.52611 * 24 12 11 40 40 H 1.08998 * 113.61786 * 25.43388 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0074 0.0005 5 6 3.6096 0.7274 -0.0045 6 6 3.6882 -0.6152 0.0025 7 6 2.3071 -1.1093 0.0055 8 6 1.8702 -2.5156 0.0134 9 8 0.6839 -2.7838 0.0151 10 7 2.7850 -3.5054 0.0176 11 6 2.3504 -4.9044 0.0260 12 6 3.5766 -5.8194 0.0300 13 6 4.1298 -6.1142 -1.3743 14 6 4.3552 -7.5596 -0.8942 15 7 5.6672 -7.7736 -0.2784 16 6 6.6289 -8.4846 -0.9454 17 1 6.4199 -8.8880 -1.9252 18 6 7.8722 -8.6869 -0.3620 19 7 8.7962 -9.3708 -1.0029 20 14 8.2332 -7.9897 1.3329 21 1 7.8616 -8.9875 2.3680 22 1 9.6812 -7.6790 1.4422 23 1 7.4438 -6.7484 1.5360 24 6 3.2293 -7.3145 0.1241 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8926 -0.5094 28 1 4.4499 1.4059 -0.0082 29 1 4.5891 -1.2109 0.0053 30 1 3.7310 -3.2914 0.0158 31 1 1.7531 -5.0940 0.9179 32 1 1.7507 -5.1039 -0.8621 33 1 4.3388 -5.5025 0.7418 34 1 3.3838 -6.0280 -2.1644 35 1 5.0521 -5.5797 -1.6014 36 1 4.1108 -8.3137 -1.6423 37 1 5.8547 -7.4116 0.6017 38 1 9.6652 -9.5118 -0.5955 39 1 3.4259 -7.7474 1.1049 40 1 2.2368 -7.5569 -0.2555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090976999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:06 Heat of formation + Delta-G solvation = 9.968904 kcal Electronic energy + Delta-G solvation = -20731.399267 eV Core-core repulsion = 17546.505961 eV Total energy + Delta-G solvation = -3184.893306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13959 -40.55968 -39.57531 -36.01397 -34.92277 -32.74653 -32.42915 -31.96444 -28.93936 -27.12765 -26.44426 -25.42846 -23.71430 -22.75772 -21.49768 -20.75537 -19.87741 -19.52340 -18.55643 -17.18941 -16.86152 -16.56506 -16.42426 -16.05790 -15.49159 -15.23340 -14.90712 -14.63131 -14.60536 -14.28774 -14.02495 -13.93712 -13.59004 -13.40671 -13.34063 -13.06962 -13.00153 -12.67145 -12.47141 -12.17586 -11.86815 -11.61265 -11.53681 -11.00532 -10.92083 -10.72136 -10.07992 -9.70355 -9.28722 -9.09817 -8.01941 -5.35497 0.76832 1.38456 1.42432 1.49435 1.54845 2.17609 2.49072 2.59332 2.60283 3.28368 3.52914 3.77058 3.80871 3.93403 4.02928 4.12334 4.28635 4.30951 4.33873 4.41055 4.67394 4.73086 4.73799 4.80523 4.94522 4.97804 4.98697 5.08181 5.10378 5.26789 5.31624 5.37042 5.54745 5.61053 5.80386 5.81956 5.99277 6.23618 6.63358 6.74138 7.08622 7.38254 7.85530 8.04423 9.19686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.003399 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.501594 B = 8234.581128 C = 8961.416085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.539 5.539 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.191 4.191 7 C -0.273 4.273 8 C 0.582 3.418 9 O -0.591 6.591 10 N -0.717 5.717 11 C 0.142 3.858 12 C -0.105 4.105 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.734 5.734 16 C -0.232 4.232 17 H 0.056 0.944 18 C -0.065 4.065 19 N -0.985 5.985 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.249 1.249 24 C -0.132 4.132 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.205 0.795 29 H 0.152 0.848 30 H 0.408 0.592 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.367 0.633 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.554 24.764 4.412 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 N -0.136 5.136 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.215 4.215 7 C -0.283 4.283 8 C 0.372 3.628 9 O -0.474 6.474 10 N -0.368 5.368 11 C 0.018 3.982 12 C -0.124 4.124 13 C -0.195 4.195 14 C 0.037 3.963 15 N -0.376 5.376 16 C -0.363 4.363 17 H 0.074 0.926 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.783 3.217 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.174 1.174 24 C -0.171 4.171 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.222 0.778 29 H 0.170 0.830 30 H 0.243 0.757 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.280 24.555 4.245 29.766 hybrid contribution 1.220 0.261 0.687 1.424 sum -15.060 24.816 4.933 29.444 Atomic orbital electron populations 1.20536 0.86323 1.04326 1.03711 1.20535 0.94413 0.86065 1.01111 1.41610 1.05962 1.08742 1.57249 0.72669 1.22277 0.86483 0.96267 1.08060 1.22298 0.95274 0.95033 1.08895 1.20267 0.94982 0.91585 1.21476 1.17751 0.84943 0.85211 0.74853 1.90682 1.17957 1.85208 1.53591 1.45777 1.10175 1.05870 1.74945 1.21269 0.95978 0.79284 1.01670 1.22563 0.96657 0.94918 0.98239 1.23733 1.00395 0.99041 0.96346 1.21379 0.84441 0.95212 0.95287 1.42447 1.11293 1.64445 1.19371 1.19075 0.92506 1.24553 1.00190 0.92553 1.25521 0.96098 1.01321 1.02723 1.69889 1.05840 1.47274 1.40518 0.85395 0.76953 0.79263 0.80084 1.20526 1.22261 1.17385 1.23354 0.99485 0.94242 1.00063 0.90100 0.89001 0.90561 0.77785 0.83042 0.75672 0.91843 0.91759 0.89445 0.89242 0.92958 0.92331 0.79970 0.93328 0.91317 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.88 71.24 0.70 -0.75 16 2 C 0.10 1.83 7.17 41.78 0.30 2.13 16 3 N -0.54 -6.16 5.90 -182.71 -1.08 -7.24 16 4 H 0.43 1.66 8.96 -92.71 -0.83 0.83 16 5 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.19 -3.50 10.56 23.62 0.25 -3.25 16 7 C -0.27 -6.42 6.29 -19.04 -0.12 -6.54 16 8 C 0.58 16.51 7.81 86.62 0.68 17.19 16 9 O -0.59 -19.97 14.81 -4.10 -0.06 -20.03 16 10 N -0.72 -18.07 5.55 -466.52 -2.59 -20.66 16 11 C 0.14 3.59 5.50 86.38 0.47 4.07 16 12 C -0.11 -2.82 3.62 -10.27 -0.04 -2.85 16 13 C -0.15 -4.81 7.44 31.18 0.23 -4.58 16 14 C 0.15 5.39 4.57 45.58 0.21 5.60 16 15 N -0.73 -33.72 5.11 -320.15 -1.64 -35.35 16 16 C -0.23 -13.23 10.45 84.03 0.88 -12.35 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 20 Si 0.96 45.09 27.74 68.60 1.90 46.99 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 24 C -0.13 -3.72 7.39 31.12 0.23 -3.49 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.66 6.47 -2.39 -0.02 1.64 16 28 H 0.21 0.96 8.06 -2.91 -0.02 0.93 16 29 H 0.15 2.43 7.70 -2.91 -0.02 2.40 16 30 H 0.41 9.03 7.60 -92.71 -0.70 8.33 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.69 7.88 -2.38 -0.02 1.67 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.49 7.92 -2.38 -0.02 2.47 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 37 H 0.37 16.04 5.76 -92.71 -0.53 15.50 16 38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -76.23 333.64 1.03 -75.19 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -1.06 Total: 31.36 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.25 Total: -7.27 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.00 Total: -126.25 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.03 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Total: -76.23 1.03 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090976999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds