Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39838 * 126.45586 * 2 1 4 4 C 1.35451 * 107.86269 * 180.23678 * 3 2 1 5 5 N 1.35536 * 108.87031 * 359.77737 * 4 3 2 6 6 H 0.96998 * 125.67653 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64541 * 359.97438 * 5 4 3 8 8 C 1.46686 * 126.23213 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99791 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99903 * 0.03224 * 8 7 5 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46846 * 179.97438 * 11 10 8 13 13 C 1.53778 * 113.61873 * 274.13531 * 12 11 10 14 14 C 1.53952 * 87.02178 * 220.05006 * 13 12 11 15 15 N 1.46511 * 113.53806 * 270.81079 * 14 13 12 16 16 C 1.36937 * 119.99791 * 252.49914 * 15 14 13 17 17 H 1.08000 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99593 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00114 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99803 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47237 * 90.00324 * 20 18 16 22 22 H 1.48501 * 109.47110 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47179 * 329.99983 * 20 18 16 24 24 C 1.53782 * 87.11378 * 25.36174 * 14 13 12 25 25 H 1.09008 * 109.46749 * 270.15019 * 1 2 3 26 26 H 1.08994 * 109.47105 * 30.15019 * 1 2 3 27 27 H 1.09001 * 109.46924 * 150.15620 * 1 2 3 28 28 H 1.07999 * 126.06742 * 0.02562 * 3 2 1 29 29 H 1.07999 * 125.56154 * 179.75652 * 4 3 2 30 30 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47226 * 299.99334 * 11 10 8 32 32 H 1.08999 * 109.47406 * 59.99933 * 11 10 8 33 33 H 1.09000 * 112.85317 * 45.33573 * 12 11 10 34 34 H 1.08996 * 113.61165 * 334.56529 * 13 12 11 35 35 H 1.08996 * 113.61806 * 105.46959 * 13 12 11 36 36 H 1.08999 * 113.74759 * 139.94579 * 14 13 12 37 37 H 0.96993 * 119.99642 * 72.49126 * 15 14 13 38 38 H 0.97005 * 120.00060 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61138 * 220.09318 * 24 14 13 40 40 H 1.08997 * 113.61771 * 89.18752 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0053 5 7 3.6284 -0.6625 -0.0037 6 1 4.4190 -1.2244 -0.0063 7 6 2.3263 -1.1089 0.0034 8 6 1.8899 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0126 10 7 2.8038 -3.4999 0.0035 11 6 2.3678 -4.8985 0.0063 12 6 3.5932 -5.8146 0.0010 13 6 4.1409 -6.1029 -1.4067 14 6 4.3668 -7.5508 -0.9350 15 7 5.6809 -7.7692 -0.3251 16 6 6.6394 -8.4777 -0.9992 17 1 6.4265 -8.8758 -1.9804 18 6 7.8846 -8.6841 -0.4216 19 7 8.1441 -8.1984 0.7739 20 14 9.1918 -9.6511 -1.3409 21 1 10.0049 -8.7229 -2.1670 22 1 10.0710 -10.3456 -0.3661 23 1 8.5389 -10.6539 -2.2204 24 6 3.2449 -7.3099 0.0889 25 1 -0.3633 0.0027 1.0278 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0137 2.1549 0.0004 29 1 4.4972 1.3253 -0.0104 30 1 3.7500 -3.2868 -0.0015 31 1 1.7731 -5.0919 0.8990 32 1 1.7653 -5.0931 -0.8809 33 1 4.3584 -5.5021 0.7116 34 1 3.3921 -6.0119 -2.1935 35 1 5.0629 -5.5680 -1.6346 36 1 4.1189 -8.3009 -1.6860 37 1 5.8719 -7.4118 0.5562 38 1 9.0142 -8.3430 1.1777 39 1 3.4447 -7.7481 1.0667 40 1 2.2507 -7.5495 -0.2883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091005958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 30.500591 kcal Electronic energy + Delta-G solvation = -20696.712981 eV Core-core repulsion = 17512.709995 eV Total energy + Delta-G solvation = -3184.002986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48918 -39.38135 -38.34534 -34.81509 -33.32416 -32.57151 -30.51918 -29.79484 -27.70955 -26.52615 -25.11640 -23.82707 -22.48408 -21.68526 -20.74944 -19.44528 -18.82893 -18.22865 -17.31900 -15.96526 -15.83608 -15.55039 -14.97561 -14.48642 -14.19109 -14.01331 -13.84704 -13.65855 -13.14829 -13.12898 -12.90911 -12.76458 -12.39626 -12.30215 -11.97484 -11.71927 -11.45236 -11.09541 -10.88751 -10.54419 -10.24978 -10.17573 -9.85380 -9.74658 -9.52741 -9.11247 -8.96835 -8.93982 -8.31049 -7.06026 -5.86370 -3.15556 1.33560 2.55518 2.91161 3.13777 3.31294 3.37629 3.43373 3.44876 4.50820 4.74378 4.81692 4.98587 5.00003 5.04736 5.14666 5.19897 5.39917 5.56038 5.59632 5.65021 5.74478 5.77213 5.82063 5.90278 5.98445 6.04988 6.16321 6.21553 6.31804 6.35573 6.52349 6.56105 6.67755 6.78339 6.84041 6.98127 7.16907 7.46872 7.63868 8.13694 8.32833 9.43590 10.00754 10.35011 11.36047 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.003123 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.827940 B = 8963.898784 C = 9706.003019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.077 4.077 3 C -0.214 4.214 4 C 0.025 3.975 5 N -0.540 5.540 6 H 0.418 0.582 7 C -0.059 4.059 8 C 0.585 3.415 9 O -0.532 6.532 10 N -0.726 5.726 11 C 0.132 3.868 12 C -0.121 4.121 13 C -0.169 4.169 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.147 4.147 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.395 0.605 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 16.565 -1.096 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.239 4.239 4 C -0.111 4.111 5 N -0.136 5.136 6 H 0.255 0.745 7 C -0.172 4.172 8 C 0.373 3.627 9 O -0.409 6.409 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.139 4.139 13 C -0.210 4.210 14 C 0.055 3.945 15 N -0.345 5.345 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.187 4.187 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.160 0.840 29 H 0.188 0.812 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.477 16.054 -1.195 19.771 hybrid contribution 1.919 -0.335 -0.109 1.951 sum -9.558 15.719 -1.304 18.443 Atomic orbital electron populations 1.20337 0.89355 1.02816 1.02150 1.19960 0.95891 0.90799 1.01936 1.20798 0.91853 0.98764 1.12448 1.22018 0.99586 0.82994 1.06513 1.42000 1.07287 1.07359 1.56965 0.74485 1.20301 0.83746 0.93691 1.19425 1.17074 0.85941 0.83042 0.76633 1.90796 1.16025 1.83348 1.50749 1.45965 1.09288 1.06898 1.75447 1.21501 0.97077 0.78497 1.01971 1.22718 0.96314 0.95115 0.99782 1.23920 1.00194 1.02414 0.94473 1.21094 0.86151 0.93410 0.93840 1.42178 1.08570 1.63860 1.19848 1.19295 0.92170 1.26157 0.99752 0.90969 1.24766 0.97955 1.01317 0.96840 1.69660 1.22768 1.50218 1.15465 0.86165 0.81726 0.79567 0.78586 1.21683 1.21718 1.20652 1.23438 0.99773 0.93963 1.01511 0.91614 0.92117 0.90153 0.84036 0.81201 0.77163 0.91592 0.91349 0.89021 0.91342 0.91618 0.91885 0.78141 0.93421 0.91264 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.83 36.01 0.35 -0.63 16 2 C -0.08 -0.92 6.21 -104.16 -0.65 -1.56 16 3 C -0.21 -2.05 10.76 -39.98 -0.43 -2.48 16 4 C 0.02 0.20 11.89 -16.91 -0.20 0.00 16 5 N -0.54 -4.90 5.99 -9.39 -0.06 -4.95 16 6 H 0.42 2.80 8.19 -40.82 -0.33 2.46 16 7 C -0.06 -0.72 7.06 -81.98 -0.58 -1.30 16 8 C 0.59 8.18 7.79 -12.85 -0.10 8.08 16 9 O -0.53 -8.94 14.80 5.20 0.08 -8.87 16 10 N -0.73 -8.95 5.55 -61.62 -0.34 -9.30 16 11 C 0.13 1.76 5.50 -4.05 -0.02 1.73 16 12 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 13 C -0.17 -2.73 7.44 -25.83 -0.19 -2.92 16 14 C 0.17 3.19 4.57 -67.02 -0.31 2.88 16 15 N -0.71 -17.06 5.31 -52.54 -0.28 -17.34 16 16 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.15 -2.30 7.39 -25.91 -0.19 -2.50 16 25 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.02 6.49 -51.93 -0.34 0.69 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.39 4.11 7.60 -40.82 -0.31 3.80 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.38 9.81 7.90 -40.82 -0.32 9.49 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -32.18 336.38 -8.61 -40.79 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.89 Total: 12.37 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.89 Total: -7.94 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.05 Total: -58.29 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.18 -8.61 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091005958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.290 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds