Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39838 * 126.45586 * 2 1 4 4 C 1.35451 * 107.86269 * 180.23678 * 3 2 1 5 5 N 1.35536 * 108.87031 * 359.77737 * 4 3 2 6 6 H 0.96998 * 125.67653 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64541 * 359.97438 * 5 4 3 8 8 C 1.46686 * 126.23213 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99791 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99903 * 0.03224 * 8 7 5 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46846 * 179.97438 * 11 10 8 13 13 C 1.53778 * 113.61873 * 274.13531 * 12 11 10 14 14 C 1.53952 * 87.02178 * 220.05006 * 13 12 11 15 15 N 1.46511 * 113.53806 * 270.81079 * 14 13 12 16 16 C 1.36937 * 119.99791 * 252.49914 * 15 14 13 17 17 H 1.08000 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99593 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00114 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99803 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47237 * 90.00324 * 20 18 16 22 22 H 1.48501 * 109.47110 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47179 * 329.99983 * 20 18 16 24 24 C 1.53782 * 87.11378 * 25.36174 * 14 13 12 25 25 H 1.09008 * 109.46749 * 270.15019 * 1 2 3 26 26 H 1.08994 * 109.47105 * 30.15019 * 1 2 3 27 27 H 1.09001 * 109.46924 * 150.15620 * 1 2 3 28 28 H 1.07999 * 126.06742 * 0.02562 * 3 2 1 29 29 H 1.07999 * 125.56154 * 179.75652 * 4 3 2 30 30 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47226 * 299.99334 * 11 10 8 32 32 H 1.08999 * 109.47406 * 59.99933 * 11 10 8 33 33 H 1.09000 * 112.85317 * 45.33573 * 12 11 10 34 34 H 1.08996 * 113.61165 * 334.56529 * 13 12 11 35 35 H 1.08996 * 113.61806 * 105.46959 * 13 12 11 36 36 H 1.08999 * 113.74759 * 139.94579 * 14 13 12 37 37 H 0.96993 * 119.99642 * 72.49126 * 15 14 13 38 38 H 0.97005 * 120.00060 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61138 * 220.09318 * 24 14 13 40 40 H 1.08997 * 113.61771 * 89.18752 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0053 5 7 3.6284 -0.6625 -0.0037 6 1 4.4190 -1.2244 -0.0063 7 6 2.3263 -1.1089 0.0034 8 6 1.8899 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0126 10 7 2.8038 -3.4999 0.0035 11 6 2.3678 -4.8985 0.0063 12 6 3.5932 -5.8146 0.0010 13 6 4.1409 -6.1029 -1.4067 14 6 4.3668 -7.5508 -0.9350 15 7 5.6809 -7.7692 -0.3251 16 6 6.6394 -8.4777 -0.9992 17 1 6.4265 -8.8758 -1.9804 18 6 7.8846 -8.6841 -0.4216 19 7 8.1441 -8.1984 0.7739 20 14 9.1918 -9.6511 -1.3409 21 1 10.0049 -8.7229 -2.1670 22 1 10.0710 -10.3456 -0.3661 23 1 8.5389 -10.6539 -2.2204 24 6 3.2449 -7.3099 0.0889 25 1 -0.3633 0.0027 1.0278 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0137 2.1549 0.0004 29 1 4.4972 1.3253 -0.0104 30 1 3.7500 -3.2868 -0.0015 31 1 1.7731 -5.0919 0.8990 32 1 1.7653 -5.0931 -0.8809 33 1 4.3584 -5.5021 0.7116 34 1 3.3921 -6.0119 -2.1935 35 1 5.0629 -5.5680 -1.6346 36 1 4.1189 -8.3009 -1.6860 37 1 5.8719 -7.4118 0.5562 38 1 9.0142 -8.3430 1.1777 39 1 3.4447 -7.7481 1.0667 40 1 2.2507 -7.5495 -0.2883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091005958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 8.654110 kcal Electronic energy + Delta-G solvation = -20697.660315 eV Core-core repulsion = 17512.709995 eV Total energy + Delta-G solvation = -3184.950320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27879 -40.55408 -39.60296 -36.11008 -35.05101 -33.41867 -32.16590 -30.85133 -28.83277 -27.52453 -26.46497 -25.70130 -23.64189 -22.80914 -21.54672 -20.50578 -19.78914 -19.46326 -19.21799 -17.08085 -16.84716 -16.61172 -16.57432 -15.88204 -15.58368 -15.22586 -14.86461 -14.73131 -14.53937 -14.40437 -13.91450 -13.68829 -13.58545 -13.30855 -13.17274 -12.96073 -12.93651 -12.65022 -12.53937 -12.18324 -12.09120 -11.58509 -11.50789 -11.11055 -10.93394 -10.78765 -10.19975 -9.70007 -9.11336 -9.01809 -7.97137 -5.25419 0.46073 1.47347 1.48095 1.56742 1.83543 2.08310 2.27058 2.33477 2.54413 3.35580 3.68040 3.75907 3.77220 3.96579 4.12378 4.26162 4.26534 4.30099 4.36418 4.40118 4.70280 4.74156 4.88332 4.89908 4.91068 4.96848 5.00826 5.08763 5.16786 5.23971 5.31917 5.43240 5.47376 5.51979 5.63362 5.77765 5.99122 6.26644 6.44208 6.60213 7.11636 7.31833 8.08525 8.31075 9.26077 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.003123 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.827940 B = 8963.898784 C = 9706.003019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.094 4.094 3 C -0.230 4.230 4 C 0.046 3.954 5 N -0.533 5.533 6 H 0.428 0.572 7 C -0.091 4.091 8 C 0.583 3.417 9 O -0.569 6.569 10 N -0.719 5.719 11 C 0.142 3.858 12 C -0.102 4.102 13 C -0.153 4.153 14 C 0.144 3.856 15 N -0.720 5.720 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.270 1.270 24 C -0.134 4.134 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.162 0.838 29 H 0.211 0.789 30 H 0.405 0.595 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.058 0.942 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 17.885 -1.927 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.253 4.253 4 C -0.091 4.091 5 N -0.130 5.130 6 H 0.267 0.733 7 C -0.204 4.204 8 C 0.372 3.628 9 O -0.449 6.449 10 N -0.369 5.369 11 C 0.018 3.982 12 C -0.121 4.121 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.195 1.195 24 C -0.174 4.174 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.179 0.821 29 H 0.228 0.772 30 H 0.240 0.760 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.395 17.368 -2.061 20.875 hybrid contribution 1.831 -0.678 0.118 1.956 sum -9.563 16.690 -1.943 19.334 Atomic orbital electron populations 1.20304 0.89491 1.02607 1.02061 1.20305 0.96369 0.91807 1.01891 1.21116 0.92125 0.99155 1.12931 1.22713 1.00540 0.82649 1.03226 1.42029 1.06628 1.08040 1.56302 0.73264 1.20102 0.85292 0.92804 1.22176 1.17347 0.85537 0.83955 0.75928 1.90769 1.17456 1.84031 1.52656 1.45857 1.09723 1.06354 1.75001 1.21328 0.96132 0.78708 1.01999 1.22493 0.96374 0.94849 0.98373 1.23738 1.00144 0.99519 0.95979 1.21418 0.85121 0.94985 0.95074 1.42305 1.10051 1.63900 1.19547 1.19665 0.92784 1.25199 0.99786 0.90599 1.25534 1.00142 1.03130 0.97846 1.69805 1.22941 1.52145 1.17036 0.85164 0.79087 0.78340 0.77321 1.21387 1.22315 1.19515 1.23349 0.99693 0.94369 0.99963 0.91660 0.90161 0.92424 0.82059 0.77222 0.76025 0.91719 0.91226 0.90027 0.89132 0.93227 0.92187 0.79338 0.94000 0.92306 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 9.83 71.24 0.70 -1.21 16 2 C -0.09 -2.16 6.21 -19.56 -0.12 -2.28 16 3 C -0.23 -3.84 10.76 22.01 0.24 -3.60 16 4 C 0.05 0.59 11.89 83.48 0.99 1.59 16 5 N -0.53 -8.55 5.99 -183.62 -1.10 -9.65 16 6 H 0.43 4.81 8.19 -92.71 -0.76 4.05 16 7 C -0.09 -2.15 7.06 40.35 0.28 -1.87 16 8 C 0.58 16.14 7.79 86.45 0.67 16.81 16 9 O -0.57 -19.39 14.80 -4.32 -0.06 -19.46 16 10 N -0.72 -17.09 5.55 -467.09 -2.59 -19.69 16 11 C 0.14 3.57 5.50 86.38 0.47 4.04 16 12 C -0.10 -2.84 3.62 -10.27 -0.04 -2.88 16 13 C -0.15 -4.74 7.44 31.18 0.23 -4.51 16 14 C 0.14 5.38 4.57 45.57 0.21 5.59 16 15 N -0.72 -34.97 5.31 -320.15 -1.70 -36.67 16 16 C -0.24 -13.13 9.97 84.03 0.84 -12.30 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 19 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 20 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 25 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.52 6.49 -2.39 -0.02 1.50 16 28 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.40 7.96 7.60 -92.71 -0.70 7.25 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.78 7.87 -2.39 -0.02 1.76 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.09 2.43 7.92 -2.39 -0.02 2.41 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 37 H 0.37 19.44 7.90 -92.71 -0.73 18.71 16 38 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -70.12 336.38 0.91 -69.21 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -1.12 Total: 34.73 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.18 Total: -8.11 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.11 Total: -123.55 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.12 0.91 -69.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091005958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.863 kcal (2) G-P(sol) polarization free energy of solvation -70.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds