Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34488 * 126.83518 * 2 1 4 4 N 1.36442 * 108.85477 * 180.25594 * 3 2 1 5 5 H 0.97002 * 124.85111 * 179.72907 * 4 3 2 6 6 C 1.34661 * 110.30075 * 359.75441 * 4 3 2 7 7 C 1.36771 * 108.39434 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94251 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00201 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99812 * 0.02810 * 8 7 6 11 11 C 1.46502 * 119.99751 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46813 * 179.97438 * 11 10 8 13 13 C 1.53781 * 113.61327 * 174.99822 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98497 * 13 12 11 15 15 N 1.46506 * 113.61361 * 89.11956 * 14 13 12 16 16 C 1.36932 * 119.99948 * 156.53166 * 15 14 13 17 17 H 1.08003 * 120.00194 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99870 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47283 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46791 * 120.00116 * 20 18 16 23 23 H 1.48492 * 109.47273 * 240.00144 * 20 18 16 24 24 C 1.53773 * 87.17302 * 334.52628 * 14 13 12 25 25 H 1.09001 * 109.46958 * 270.14286 * 1 2 3 26 26 H 1.08994 * 109.47008 * 30.14146 * 1 2 3 27 27 H 1.09000 * 109.47300 * 150.14405 * 1 2 3 28 28 H 1.08002 * 125.57190 * 0.04445 * 3 2 1 29 29 H 1.07999 * 125.80103 * 180.02562 * 6 4 3 30 30 H 0.97002 * 120.00271 * 359.97438 * 10 8 7 31 31 H 1.09005 * 109.47329 * 60.00307 * 11 10 8 32 32 H 1.08995 * 109.47088 * 299.99471 * 11 10 8 33 33 H 1.09005 * 112.84988 * 43.80903 * 12 11 10 34 34 H 1.09001 * 113.61537 * 25.43951 * 13 12 11 35 35 H 1.08998 * 113.61680 * 254.53105 * 13 12 11 36 36 H 1.09002 * 113.61408 * 219.93560 * 14 13 12 37 37 H 0.96997 * 119.99707 * 336.52824 * 15 14 13 38 38 H 0.97000 * 119.99576 * 179.97438 * 19 18 16 39 39 H 1.09007 * 113.61678 * 140.01927 * 24 14 13 40 40 H 1.09000 * 113.61916 * 270.92600 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6903 -0.0042 7 6 2.3864 -1.1741 0.0034 8 6 1.9748 -2.5880 0.0070 9 8 0.7936 -2.8776 0.0134 10 7 2.9073 -3.5612 0.0035 11 6 2.4979 -4.9679 0.0066 12 6 3.7404 -5.8606 0.0008 13 6 3.4223 -7.3599 0.1263 14 6 4.5321 -7.6019 -0.9103 15 7 5.8597 -7.7821 -0.3175 16 6 6.8304 -8.4600 -1.0054 17 1 6.6172 -8.8622 -1.9849 18 6 8.0884 -8.6304 -0.4440 19 7 8.3480 -8.1407 0.7499 20 14 9.4124 -9.5557 -1.3821 21 1 8.8712 -10.0025 -2.6909 22 1 10.5762 -8.6612 -1.6075 23 1 9.8425 -10.7385 -0.5941 24 6 4.2704 -6.1720 -1.4118 25 1 -0.3633 0.0026 1.0277 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5116 28 1 1.9869 2.1059 0.0007 29 1 4.5664 -1.2861 -0.0073 30 1 3.8494 -3.3303 -0.0019 31 1 1.8988 -5.1739 -0.8805 32 1 1.9073 -5.1724 0.8995 33 1 4.5107 -5.5184 0.6920 34 1 2.4270 -7.6264 -0.2294 35 1 3.6460 -7.7729 1.1099 36 1 4.2866 -8.3726 -1.6409 37 1 6.0510 -7.4213 0.5623 38 1 9.2270 -8.2601 1.1423 39 1 5.1783 -5.6264 -1.6691 40 1 3.5065 -6.1141 -2.1872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091364038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = 30.933674 kcal Electronic energy + Delta-G solvation = -20617.218873 eV Core-core repulsion = 17433.234667 eV Total energy + Delta-G solvation = -3183.984206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32556 -39.26523 -38.21357 -34.52474 -33.18516 -32.55147 -30.61712 -29.75925 -27.07284 -26.67130 -25.02938 -23.84467 -22.81039 -21.56948 -20.04041 -19.39964 -18.54005 -18.19343 -17.27463 -16.22105 -15.67646 -15.25771 -14.87860 -14.46640 -14.16449 -14.00869 -13.91150 -13.49709 -13.13347 -13.04724 -12.87853 -12.77437 -12.44995 -12.20004 -11.87910 -11.51723 -11.33242 -11.03078 -10.86386 -10.45725 -10.15190 -10.04370 -9.69432 -9.67629 -9.40999 -8.96834 -8.89159 -8.65065 -8.45819 -7.00441 -5.82026 -3.10704 1.66545 2.24535 3.00040 3.40175 3.44066 3.46467 3.48456 3.63105 4.54821 4.66924 4.86420 4.92990 5.09933 5.12923 5.23638 5.28788 5.45438 5.47319 5.65522 5.68412 5.76494 5.76546 5.90191 5.96297 6.05573 6.14019 6.17202 6.25301 6.39882 6.55127 6.63295 6.66453 6.72406 6.76777 6.94216 7.06502 7.21960 7.68719 7.74225 8.37416 8.47322 9.48119 10.06173 10.40478 11.40565 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.003092 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.166058 B = 9052.677294 C = 9806.632827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.111 4.111 3 C -0.030 4.030 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.048 3.952 7 C -0.227 4.227 8 C 0.585 3.415 9 O -0.550 6.550 10 N -0.725 5.725 11 C 0.133 3.867 12 C -0.119 4.119 13 C -0.147 4.147 14 C 0.166 3.834 15 N -0.707 5.707 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.168 4.168 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.065 0.935 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 18.168 -1.039 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.088 4.088 7 C -0.237 4.237 8 C 0.374 3.626 9 O -0.428 6.428 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.138 4.138 13 C -0.187 4.187 14 C 0.054 3.946 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.091 0.909 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.209 4.209 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.185 0.815 29 H 0.190 0.810 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.591 17.913 -1.151 21.367 hybrid contribution 1.854 0.131 -0.117 1.863 sum -9.737 18.044 -1.267 20.542 Atomic orbital electron populations 1.20184 0.89381 1.02513 1.01904 1.20568 0.95638 0.90395 1.05114 1.21563 0.82487 0.99167 1.12491 1.41489 1.08303 1.06721 1.57910 0.74634 1.22002 0.98707 0.83871 1.04270 1.20442 0.92656 0.93002 1.17614 1.17414 0.85434 0.84026 0.75751 1.90723 1.17291 1.83850 1.50977 1.45912 1.09496 1.06472 1.75670 1.21431 0.96964 0.78939 1.01650 1.22751 0.96309 0.95073 0.99646 1.23417 0.99721 0.94231 1.01314 1.21066 0.86002 0.93709 0.93794 1.42182 1.06868 1.65431 1.20051 1.19340 0.91005 1.27034 0.99710 0.90946 1.24761 0.97844 1.01474 0.96909 1.69672 1.21961 1.50557 1.15939 0.86103 0.81946 0.79170 0.78898 1.20486 1.21889 1.21830 1.23922 1.00219 1.02193 0.94544 0.91899 0.92512 0.90288 0.81513 0.80966 0.76822 0.91677 0.91923 0.88989 0.90409 0.91357 0.92093 0.78125 0.93523 0.91576 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.97 36.01 0.36 -0.53 16 2 C -0.11 -1.27 6.35 -102.54 -0.65 -1.92 16 3 C -0.03 -0.25 11.82 -16.83 -0.20 -0.45 16 4 N -0.55 -3.90 5.90 -12.85 -0.08 -3.97 16 5 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 6 C 0.05 0.44 11.40 -16.84 -0.19 0.25 16 7 C -0.23 -2.84 6.29 -103.35 -0.65 -3.49 16 8 C 0.59 8.72 7.81 -12.59 -0.10 8.62 16 9 O -0.55 -9.93 15.32 5.26 0.08 -9.85 16 10 N -0.72 -9.57 5.55 -61.43 -0.34 -9.91 16 11 C 0.13 1.88 5.51 -4.04 -0.02 1.86 16 12 C -0.12 -1.80 3.65 -89.67 -0.33 -2.13 16 13 C -0.15 -2.38 7.38 -25.92 -0.19 -2.57 16 14 C 0.17 3.24 4.55 -67.12 -0.31 2.94 16 15 N -0.71 -17.32 5.31 -52.64 -0.28 -17.60 16 16 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C -0.17 -2.80 7.45 -25.78 -0.19 -3.00 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16 28 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.17 1.13 7.45 -52.49 -0.39 0.74 16 30 H 0.40 4.45 7.42 -40.82 -0.30 4.14 16 31 H 0.06 0.95 7.85 -51.93 -0.41 0.55 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.38 9.95 7.90 -40.82 -0.32 9.63 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 40 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -33.69 337.27 -8.45 -42.14 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.90 Total: 11.61 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.72 Total: -7.61 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.03 Total: -58.40 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.69 -8.45 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091364038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.076 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds