Wall clock time and date at job start Mon Mar 30 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34488 * 126.83518 * 2 1 4 4 N 1.36442 * 108.85477 * 180.25594 * 3 2 1 5 5 H 0.97002 * 124.85111 * 179.72907 * 4 3 2 6 6 C 1.34661 * 110.30075 * 359.75441 * 4 3 2 7 7 C 1.36771 * 108.39434 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94251 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00201 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99812 * 0.02810 * 8 7 6 11 11 C 1.46502 * 119.99751 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46813 * 179.97438 * 11 10 8 13 13 C 1.53781 * 113.61327 * 174.99822 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98497 * 13 12 11 15 15 N 1.46506 * 113.61361 * 89.11956 * 14 13 12 16 16 C 1.36932 * 119.99948 * 156.53166 * 15 14 13 17 17 H 1.08003 * 120.00194 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99870 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47283 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46791 * 120.00116 * 20 18 16 23 23 H 1.48492 * 109.47273 * 240.00144 * 20 18 16 24 24 C 1.53773 * 87.17302 * 334.52628 * 14 13 12 25 25 H 1.09001 * 109.46958 * 270.14286 * 1 2 3 26 26 H 1.08994 * 109.47008 * 30.14146 * 1 2 3 27 27 H 1.09000 * 109.47300 * 150.14405 * 1 2 3 28 28 H 1.08002 * 125.57190 * 0.04445 * 3 2 1 29 29 H 1.07999 * 125.80103 * 180.02562 * 6 4 3 30 30 H 0.97002 * 120.00271 * 359.97438 * 10 8 7 31 31 H 1.09005 * 109.47329 * 60.00307 * 11 10 8 32 32 H 1.08995 * 109.47088 * 299.99471 * 11 10 8 33 33 H 1.09005 * 112.84988 * 43.80903 * 12 11 10 34 34 H 1.09001 * 113.61537 * 25.43951 * 13 12 11 35 35 H 1.08998 * 113.61680 * 254.53105 * 13 12 11 36 36 H 1.09002 * 113.61408 * 219.93560 * 14 13 12 37 37 H 0.96997 * 119.99707 * 336.52824 * 15 14 13 38 38 H 0.97000 * 119.99576 * 179.97438 * 19 18 16 39 39 H 1.09007 * 113.61678 * 140.01927 * 24 14 13 40 40 H 1.09000 * 113.61916 * 270.92600 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6903 -0.0042 7 6 2.3864 -1.1741 0.0034 8 6 1.9748 -2.5880 0.0070 9 8 0.7936 -2.8776 0.0134 10 7 2.9073 -3.5612 0.0035 11 6 2.4979 -4.9679 0.0066 12 6 3.7404 -5.8606 0.0008 13 6 3.4223 -7.3599 0.1263 14 6 4.5321 -7.6019 -0.9103 15 7 5.8597 -7.7821 -0.3175 16 6 6.8304 -8.4600 -1.0054 17 1 6.6172 -8.8622 -1.9849 18 6 8.0884 -8.6304 -0.4440 19 7 8.3480 -8.1407 0.7499 20 14 9.4124 -9.5557 -1.3821 21 1 8.8712 -10.0025 -2.6909 22 1 10.5762 -8.6612 -1.6075 23 1 9.8425 -10.7385 -0.5941 24 6 4.2704 -6.1720 -1.4118 25 1 -0.3633 0.0026 1.0277 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5116 28 1 1.9869 2.1059 0.0007 29 1 4.5664 -1.2861 -0.0073 30 1 3.8494 -3.3303 -0.0019 31 1 1.8988 -5.1739 -0.8805 32 1 1.9073 -5.1724 0.8995 33 1 4.5107 -5.5184 0.6920 34 1 2.4270 -7.6264 -0.2294 35 1 3.6460 -7.7729 1.1099 36 1 4.2866 -8.3726 -1.6409 37 1 6.0510 -7.4213 0.5623 38 1 9.2270 -8.2601 1.1423 39 1 5.1783 -5.6264 -1.6691 40 1 3.5065 -6.1141 -2.1872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091364038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:41 Heat of formation + Delta-G solvation = 7.476738 kcal Electronic energy + Delta-G solvation = -20618.236042 eV Core-core repulsion = 17433.234667 eV Total energy + Delta-G solvation = -3185.001375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06020 -40.50318 -39.52232 -35.94719 -34.91578 -33.30998 -32.18608 -30.97817 -28.36079 -27.41665 -26.42203 -25.71691 -23.95963 -22.84814 -20.92828 -20.36680 -19.64685 -19.31441 -19.09216 -17.23570 -16.92105 -16.58515 -16.34413 -15.78427 -15.54942 -15.20679 -14.85883 -14.69662 -14.50734 -14.31073 -14.00534 -13.64507 -13.56015 -13.27938 -13.23159 -12.93202 -12.90391 -12.62000 -12.30294 -12.11745 -12.03060 -11.53604 -11.46765 -10.99846 -10.88338 -10.69262 -10.06498 -9.50294 -9.16004 -8.98822 -7.94690 -5.22727 0.80901 1.48533 1.49172 1.52071 1.59127 2.29495 2.51809 2.56381 2.61433 3.38132 3.73377 3.81957 3.86119 4.01723 4.11662 4.19133 4.32193 4.34549 4.42959 4.49109 4.69680 4.77282 4.85273 4.91604 4.94725 4.94959 5.01370 5.13652 5.18267 5.30960 5.35669 5.39590 5.52485 5.60995 5.68318 5.85436 5.98691 6.29335 6.67124 6.74722 7.34339 7.39769 8.11320 8.34139 9.28814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.003092 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.166058 B = 9052.677294 C = 9806.632827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.152 4.152 3 C -0.010 4.010 4 N -0.534 5.534 5 H 0.437 0.563 6 C 0.064 3.936 7 C -0.271 4.271 8 C 0.580 3.420 9 O -0.592 6.592 10 N -0.718 5.718 11 C 0.143 3.857 12 C -0.100 4.100 13 C -0.135 4.135 14 C 0.144 3.856 15 N -0.720 5.720 16 C -0.240 4.240 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.295 1.295 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.203 0.797 29 H 0.198 0.802 30 H 0.408 0.592 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.050 0.950 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 19.775 -1.875 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C -0.138 4.138 4 N -0.129 5.129 5 H 0.278 0.722 6 C -0.074 4.074 7 C -0.281 4.281 8 C 0.371 3.629 9 O -0.475 6.475 10 N -0.369 5.369 11 C 0.019 3.981 12 C -0.119 4.119 13 C -0.174 4.174 14 C 0.034 3.966 15 N -0.358 5.358 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.222 1.222 24 C -0.193 4.193 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.214 0.786 30 H 0.244 0.756 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.275 19.548 -2.021 22.657 hybrid contribution 1.705 -0.319 0.117 1.739 sum -9.570 19.230 -1.903 21.564 Atomic orbital electron populations 1.20100 0.89772 1.02107 1.01529 1.20832 0.96081 0.91293 1.07575 1.22004 0.82289 0.99868 1.09647 1.41554 1.08878 1.06344 1.56090 0.72229 1.22286 0.98266 0.84841 1.02016 1.20458 0.94623 0.91997 1.21042 1.17855 0.84943 0.85257 0.74852 1.90690 1.18980 1.84614 1.53184 1.45817 1.09950 1.05902 1.75218 1.21247 0.96083 0.79330 1.01441 1.22532 0.96305 0.94766 0.98318 1.23335 0.99658 0.94614 0.99807 1.21374 0.84901 0.95194 0.95095 1.42309 1.08334 1.65458 1.19718 1.19696 0.91669 1.26062 0.99747 0.90622 1.25533 1.00065 1.03176 0.97964 1.69815 1.22153 1.52456 1.17520 0.85097 0.79156 0.77577 0.78080 1.19121 1.22033 1.22207 1.23746 1.00176 0.99454 0.95916 0.92327 0.90108 0.93386 0.78065 0.78553 0.75601 0.91806 0.92279 0.89883 0.87762 0.92308 0.92359 0.79308 0.94029 0.93115 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.97 71.24 0.71 -0.98 16 2 C -0.15 -3.34 6.35 -18.51 -0.12 -3.45 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.76 5.90 -194.56 -1.15 -6.91 16 5 H 0.44 1.36 8.96 -92.71 -0.83 0.53 16 6 C 0.06 1.02 11.40 83.92 0.96 1.98 16 7 C -0.27 -6.57 6.29 -19.04 -0.12 -6.69 16 8 C 0.58 17.37 7.81 86.61 0.68 18.05 16 9 O -0.59 -22.12 15.32 -4.11 -0.06 -22.19 16 10 N -0.72 -18.46 5.55 -466.52 -2.59 -21.05 16 11 C 0.14 3.89 5.51 86.38 0.48 4.36 16 12 C -0.10 -2.93 3.65 -10.18 -0.04 -2.97 16 13 C -0.13 -4.20 7.38 31.12 0.23 -3.97 16 14 C 0.14 5.52 4.55 45.51 0.21 5.73 16 15 N -0.72 -35.43 5.31 -320.45 -1.70 -37.13 16 16 C -0.24 -13.10 9.97 84.04 0.84 -12.26 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 19 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 20 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 C -0.15 -4.89 7.45 31.21 0.23 -4.66 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.32 6.86 -2.39 -0.02 1.30 16 28 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.20 2.00 7.45 -2.91 -0.02 1.98 16 30 H 0.41 8.62 7.42 -92.71 -0.69 7.93 16 31 H 0.06 1.79 7.85 -2.38 -0.02 1.77 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.10 2.71 8.10 -2.39 -0.02 2.70 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.24 8.11 -2.39 -0.02 2.23 16 37 H 0.37 19.69 7.90 -92.71 -0.73 18.96 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.09 2.51 7.90 -2.39 -0.02 2.49 16 Total: -1.00 -74.40 337.27 1.13 -73.27 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -1.18 Total: 32.21 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.50 Total: -7.80 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.15 Total: -122.98 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.40 1.13 -73.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091364038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.743 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds