Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00352 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99989 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47101 * 179.97438 * 12 11 9 14 14 N 1.46505 * 109.47103 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99989 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00094 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00265 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00339 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47085 * 90.00082 * 19 17 15 21 21 H 1.48503 * 109.47143 * 210.00210 * 19 17 15 22 22 H 1.48504 * 109.46944 * 329.99966 * 19 17 15 23 23 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 25 25 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 26 26 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 27 27 H 1.07995 * 119.62265 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 29 29 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 30 30 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 31 31 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 32 32 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 33 33 H 0.97001 * 120.00122 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47146 * 299.99555 * 12 11 9 35 35 H 1.09001 * 109.47329 * 59.99811 * 12 11 9 36 36 H 1.08993 * 109.47281 * 299.99941 * 13 12 11 37 37 H 1.09001 * 109.46924 * 59.99880 * 13 12 11 38 38 H 0.96998 * 119.99608 * 0.02562 * 14 13 12 39 39 H 0.97004 * 119.99622 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.79539 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4194 0.0001 8 6 4.6772 -2.8499 -1.4421 9 6 5.4855 -4.1217 -1.4415 10 8 5.8097 -4.6337 -0.3910 11 7 5.8482 -4.6902 -2.6085 12 6 6.6336 -5.9269 -2.6079 13 6 6.9081 -6.3573 -4.0501 14 7 7.6941 -7.5938 -4.0495 15 6 8.0626 -8.1713 -5.2352 16 1 7.7743 -7.7152 -6.1707 17 6 8.8068 -9.3431 -5.2347 18 7 9.1586 -9.8987 -4.0945 19 14 9.3102 -10.1306 -6.8520 20 1 10.6255 -9.5887 -7.2782 21 1 9.4146 -11.6014 -6.6751 22 1 8.2907 -9.8278 -7.8885 23 6 2.2089 -1.1955 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6676 2.1275 0.0004 28 1 5.3047 0.1285 0.0005 29 1 5.3484 -2.2489 0.5147 30 1 3.8458 -3.2031 0.5135 31 1 3.7316 -3.0202 -1.9567 32 1 5.2341 -2.0660 -1.9555 33 1 5.5886 -4.2810 -3.4488 34 1 7.5791 -5.7566 -2.0929 35 1 6.0765 -6.7109 -2.0949 36 1 5.9626 -6.5277 -4.5648 37 1 7.4651 -5.5735 -4.5635 38 1 7.9533 -8.0032 -3.2093 39 1 9.6784 -10.7178 -4.0942 40 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131135825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -10.681997 kcal Electronic energy + Delta-G solvation = -19747.844564 eV Core-core repulsion = 16562.055768 eV Total energy + Delta-G solvation = -3185.788797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68318 -39.56862 -35.83693 -34.81295 -33.93972 -33.84806 -31.39686 -30.49668 -27.83729 -27.65371 -25.26594 -23.58911 -23.15362 -21.52621 -21.17342 -20.14608 -17.40752 -17.31029 -17.03554 -16.95435 -15.70263 -15.59878 -14.73992 -14.67466 -14.52375 -14.40824 -13.78253 -13.46500 -13.37783 -13.21356 -13.13129 -13.11827 -12.91215 -12.73549 -12.38658 -11.83457 -11.45932 -11.27147 -11.12686 -10.84198 -10.82026 -10.14442 -10.02608 -9.86188 -9.75513 -9.67343 -9.11441 -9.00629 -8.84727 -7.01417 -5.81327 -3.12206 0.74589 0.93796 2.69432 3.21060 3.41114 3.45267 3.47533 3.48446 4.10164 4.37104 4.38608 4.56599 4.62806 4.63208 4.70258 4.79052 4.86674 5.08702 5.14339 5.23349 5.30339 5.39263 5.48233 5.52486 5.53716 5.63766 5.75890 5.84901 5.88787 5.94420 6.00782 6.13246 6.38699 6.46932 6.68157 6.72310 7.58953 7.64066 7.65457 8.29373 8.36392 9.47481 10.02160 10.36877 11.41189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045450 B = 0.002179 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.916059 B =12849.461440 C =12967.679217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.090 3.910 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.125 4.125 7 C -0.062 4.062 8 C -0.134 4.134 9 C 0.509 3.491 10 O -0.543 6.543 11 N -0.724 5.724 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.075 4.075 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.068 21.693 7.659 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.068 4.068 4 N -0.188 5.188 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.175 4.175 9 C 0.295 3.705 10 O -0.420 6.420 11 N -0.375 5.375 12 C -0.014 4.014 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.101 4.101 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.067 0.933 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.353 22.071 8.241 28.679 hybrid contribution -0.148 -1.263 -1.094 1.678 sum -16.501 20.808 7.148 27.501 Atomic orbital electron populations 1.20735 0.90181 1.03188 1.02709 1.20955 0.97624 0.94162 1.01089 1.22658 0.90009 0.97454 0.96638 1.67689 1.08348 1.31294 1.11435 1.22721 1.00411 0.87109 0.95984 1.20962 0.94530 0.96783 1.00468 1.20277 1.00467 0.93405 0.95856 1.21642 1.01120 0.95938 0.98761 1.20573 0.80190 0.85943 0.83836 1.90720 1.55599 1.64438 1.31233 1.45974 1.55761 1.27350 1.08456 1.21579 0.95510 0.85070 0.99207 1.20756 0.95156 0.90408 0.92046 1.42195 1.63521 1.24944 1.06832 1.19190 1.27829 1.04680 0.85847 0.91030 1.24794 1.00867 0.98204 0.97041 1.69673 1.42748 1.21420 1.24002 0.86138 0.78427 0.78540 0.82737 1.21611 1.21677 1.20708 1.21458 0.93477 0.98330 0.96815 0.90796 0.91236 0.91158 0.83013 0.82718 0.89569 0.89786 0.88855 0.88704 0.76648 0.91284 0.91323 0.95836 0.95816 0.78000 0.93348 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.04 36.01 0.36 -0.14 16 2 C -0.14 -0.98 5.90 -104.48 -0.62 -1.60 16 3 C 0.09 0.74 10.86 -17.55 -0.19 0.54 16 4 N -0.48 -4.88 10.36 -13.26 -0.14 -5.02 16 5 C 0.09 0.86 10.86 -17.55 -0.19 0.67 16 6 C -0.13 -1.05 5.15 -104.48 -0.54 -1.59 16 7 C -0.06 -0.54 4.66 -27.88 -0.13 -0.67 16 8 C -0.13 -1.15 5.68 -27.89 -0.16 -1.31 16 9 C 0.51 6.63 7.83 -10.99 -0.09 6.54 16 10 O -0.54 -9.36 15.98 5.56 0.09 -9.27 16 11 N -0.72 -9.37 5.56 -60.30 -0.33 -9.71 16 12 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 13 C 0.14 2.80 6.37 -4.04 -0.03 2.78 16 14 N -0.73 -18.52 5.60 -59.91 -0.34 -18.86 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.07 -0.57 9.54 -39.28 -0.37 -0.95 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 27 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.09 0.81 8.05 -51.92 -0.42 0.39 16 30 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 10.38 7.67 -40.82 -0.31 10.07 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -34.23 345.35 -8.14 -42.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.11 Total: 6.87 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.22 Total: -1.32 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.08 Total: -61.10 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.23 -8.14 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131135825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.695 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds