Wall clock time and date at job start Mon Mar 30 2020 01:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00352 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99989 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47101 * 179.97438 * 12 11 9 14 14 N 1.46505 * 109.47103 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99989 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00094 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00265 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00339 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47085 * 90.00082 * 19 17 15 21 21 H 1.48503 * 109.47143 * 210.00210 * 19 17 15 22 22 H 1.48504 * 109.46944 * 329.99966 * 19 17 15 23 23 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 25 25 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 26 26 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 27 27 H 1.07995 * 119.62265 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 29 29 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 30 30 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 31 31 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 32 32 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 33 33 H 0.97001 * 120.00122 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47146 * 299.99555 * 12 11 9 35 35 H 1.09001 * 109.47329 * 59.99811 * 12 11 9 36 36 H 1.08993 * 109.47281 * 299.99941 * 13 12 11 37 37 H 1.09001 * 109.46924 * 59.99880 * 13 12 11 38 38 H 0.96998 * 119.99608 * 0.02562 * 14 13 12 39 39 H 0.97004 * 119.99622 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.79539 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4194 0.0001 8 6 4.6772 -2.8499 -1.4421 9 6 5.4855 -4.1217 -1.4415 10 8 5.8097 -4.6337 -0.3910 11 7 5.8482 -4.6902 -2.6085 12 6 6.6336 -5.9269 -2.6079 13 6 6.9081 -6.3573 -4.0501 14 7 7.6941 -7.5938 -4.0495 15 6 8.0626 -8.1713 -5.2352 16 1 7.7743 -7.7152 -6.1707 17 6 8.8068 -9.3431 -5.2347 18 7 9.1586 -9.8987 -4.0945 19 14 9.3102 -10.1306 -6.8520 20 1 10.6255 -9.5887 -7.2782 21 1 9.4146 -11.6014 -6.6751 22 1 8.2907 -9.8278 -7.8885 23 6 2.2089 -1.1955 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6676 2.1275 0.0004 28 1 5.3047 0.1285 0.0005 29 1 5.3484 -2.2489 0.5147 30 1 3.8458 -3.2031 0.5135 31 1 3.7316 -3.0202 -1.9567 32 1 5.2341 -2.0660 -1.9555 33 1 5.5886 -4.2810 -3.4488 34 1 7.5791 -5.7566 -2.0929 35 1 6.0765 -6.7109 -2.0949 36 1 5.9626 -6.5277 -4.5648 37 1 7.4651 -5.5735 -4.5635 38 1 7.9533 -8.0032 -3.2093 39 1 9.6784 -10.7178 -4.0942 40 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131135825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:29 Heat of formation + Delta-G solvation = -34.638639 kcal Electronic energy + Delta-G solvation = -19748.883402 eV Core-core repulsion = 16562.055768 eV Total energy + Delta-G solvation = -3186.827635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32941 -40.64164 -37.37235 -35.64872 -35.41862 -34.47017 -33.18683 -31.40676 -29.34960 -28.14147 -26.34774 -25.13940 -23.91492 -23.06053 -21.91626 -21.14568 -19.32575 -18.15926 -17.81504 -17.66294 -16.93790 -16.79249 -16.48204 -15.62595 -15.57189 -15.21555 -15.09317 -14.97501 -14.43360 -14.15765 -14.01034 -13.93211 -13.64159 -13.20831 -13.09127 -13.05412 -13.03633 -12.66844 -12.51524 -12.40576 -12.08790 -11.96053 -11.86910 -11.00622 -10.99762 -10.50167 -10.36026 -10.12243 -9.70929 -9.07435 -7.97629 -5.29141 0.15073 0.34238 1.48130 1.50576 1.58984 1.65005 2.13598 2.57661 2.83867 3.36505 3.49410 3.69741 3.84951 3.94691 4.01494 4.06978 4.08057 4.13676 4.19339 4.23725 4.27504 4.48710 4.58358 4.66212 4.71717 4.84422 4.88690 4.97812 5.04460 5.13299 5.15899 5.24573 5.34389 5.39344 5.40788 5.49008 5.82402 6.23225 6.56806 7.04476 7.26773 7.29344 8.01414 8.24130 9.25968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045450 B = 0.002179 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.916059 B =12849.461440 C =12967.679217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.077 3.923 4 N -0.508 5.508 5 C 0.080 3.920 6 C -0.126 4.126 7 C -0.056 4.056 8 C -0.121 4.121 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.713 5.713 12 C 0.127 3.873 13 C 0.148 3.852 14 N -0.748 5.748 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.980 3.020 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.265 1.265 23 C -0.082 4.082 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.418 0.582 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 23.084 6.244 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.079 4.079 4 N -0.216 5.216 5 C -0.077 4.077 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.296 3.704 10 O -0.469 6.469 11 N -0.366 5.366 12 C 0.002 3.998 13 C 0.022 3.978 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.101 0.899 17 C -0.271 4.271 18 N -0.621 5.621 19 Si 0.809 3.191 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.190 1.190 23 C -0.107 4.107 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.188 0.812 28 H 0.179 0.821 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.131 23.529 6.782 30.469 hybrid contribution 0.314 -1.599 -0.613 1.741 sum -17.817 21.930 6.170 28.921 Atomic orbital electron populations 1.20792 0.88187 1.04111 1.03537 1.21241 0.99052 0.93567 0.99802 1.23067 0.89676 0.98819 0.96383 1.67685 1.09482 1.31935 1.12511 1.22890 1.00946 0.87292 0.96554 1.20860 0.94880 0.96075 1.00939 1.20169 0.99946 0.93423 0.95881 1.21635 1.01604 0.93668 0.99136 1.21379 0.79538 0.86715 0.82786 1.90709 1.57385 1.65943 1.32880 1.45807 1.55098 1.26022 1.09688 1.21122 0.95071 0.86390 0.97243 1.20859 0.94880 0.88430 0.93675 1.42446 1.64285 1.26722 1.05696 1.19654 1.26729 1.04545 0.87030 0.89877 1.25699 1.01724 0.99255 1.00432 1.69843 1.44111 1.21855 1.26287 0.85044 0.78251 0.76886 0.78962 1.21300 1.22308 1.18989 1.21729 0.93290 0.99320 0.96401 0.89873 0.90581 0.90033 0.81187 0.82070 0.90670 0.90585 0.86326 0.86504 0.74528 0.93058 0.92993 0.94439 0.94508 0.79484 0.93907 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 71.24 0.72 0.01 16 2 C -0.13 -1.67 5.90 -19.77 -0.12 -1.78 16 3 C 0.08 1.16 10.86 84.68 0.92 2.08 16 4 N -0.51 -9.91 10.36 -195.85 -2.03 -11.94 16 5 C 0.08 1.38 10.86 84.67 0.92 2.30 16 6 C -0.13 -1.94 5.15 -19.77 -0.10 -2.04 16 7 C -0.06 -0.92 4.66 29.85 0.14 -0.78 16 8 C -0.12 -1.78 5.68 29.84 0.17 -1.62 16 9 C 0.51 12.61 7.83 87.65 0.69 13.30 16 10 O -0.59 -20.42 15.98 -3.02 -0.05 -20.46 16 11 N -0.71 -17.33 5.56 -463.07 -2.57 -19.90 16 12 C 0.13 4.26 5.79 86.38 0.50 4.76 16 13 C 0.15 5.58 6.37 86.38 0.55 6.13 16 14 N -0.75 -38.00 5.60 -343.46 -1.92 -39.92 16 15 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 18 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 19 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.08 -1.09 9.54 22.47 0.21 -0.87 16 24 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.08 0.41 8.10 -2.39 -0.02 0.39 16 26 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 27 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 30 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.42 7.17 8.47 -92.71 -0.79 6.39 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.37 20.55 7.67 -92.71 -0.71 19.84 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -74.22 345.35 1.19 -73.04 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.45 Total: 26.57 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.90 Total: 4.58 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -6.24 Total: -131.39 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.22 1.19 -73.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131135825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.398 kcal (2) G-P(sol) polarization free energy of solvation -74.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds