Wall clock time and date at job start Mon Mar 30 2020 01:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.45542 * 2 1 4 4 C 1.38359 * 119.30189 * 180.23274 * 3 2 1 5 5 C 1.50703 * 120.85766 * 179.77604 * 4 3 2 6 6 C 1.40028 * 118.28697 * 359.49697 * 4 3 2 7 7 C 1.47836 * 120.55853 * 180.22858 * 6 4 3 8 8 O 1.21557 * 119.99771 * 90.00663 * 7 6 4 9 9 N 1.34774 * 120.00595 * 270.00129 * 7 6 4 10 10 C 1.46500 * 120.00471 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47001 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47001 * 179.97438 * 11 10 9 13 13 C 1.36933 * 120.00334 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99940 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00394 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00252 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99947 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47085 * 90.00276 * 17 15 13 19 19 H 1.48496 * 109.47431 * 210.00162 * 17 15 13 20 20 H 1.48499 * 109.47262 * 330.00502 * 17 15 13 21 21 C 1.39515 * 118.88129 * 0.25499 * 6 4 3 22 22 C 1.50699 * 119.71821 * 179.97438 * 21 6 4 23 23 N 1.31700 * 120.56709 * 0.02562 * 21 6 4 24 24 H 1.09005 * 109.47356 * 270.27618 * 1 2 3 25 25 H 1.08999 * 109.47623 * 30.27594 * 1 2 3 26 26 H 1.09010 * 109.47148 * 150.27778 * 1 2 3 27 27 H 1.07999 * 120.35704 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47152 * 269.71601 * 5 4 3 29 29 H 1.09001 * 109.46980 * 149.71702 * 5 4 3 30 30 H 1.09004 * 109.47113 * 29.71683 * 5 4 3 31 31 H 0.97003 * 119.99488 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.46699 * 300.00099 * 10 9 7 33 33 H 1.08995 * 109.47029 * 59.99912 * 10 9 7 34 34 H 1.08997 * 109.47114 * 299.99403 * 11 10 9 35 35 H 1.09002 * 109.47383 * 60.00153 * 11 10 9 36 36 H 0.97003 * 120.00040 * 0.02562 * 12 11 10 37 37 H 0.97005 * 119.99993 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.47141 * 89.99947 * 22 21 6 39 39 H 1.09003 * 109.47519 * 210.00228 * 22 21 6 40 40 H 1.09000 * 109.47158 * 330.00198 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1873 1.2047 0.0000 4 6 3.5709 1.2010 -0.0049 5 6 4.3473 2.4926 -0.0101 6 6 4.2312 -0.0338 0.0011 7 6 5.7082 -0.0964 0.0014 8 8 6.3155 -0.1170 1.0542 9 7 6.3816 -0.1306 -1.1656 10 6 7.8452 -0.1931 -1.1653 11 6 8.3547 -0.2209 -2.6077 12 7 9.8184 -0.2828 -2.6074 13 6 10.5025 -0.3174 -3.7931 14 1 9.9630 -0.2995 -4.7286 15 6 11.8894 -0.3766 -3.7929 16 7 12.5469 -0.4094 -4.9326 17 14 12.8226 -0.4083 -2.1750 18 1 13.0102 -1.8155 -1.7393 19 1 14.1487 0.2348 -2.3558 20 1 12.0506 0.3304 -1.1437 21 6 3.4717 -1.2041 0.0063 22 6 4.1628 -2.5433 0.0123 23 7 2.1558 -1.1486 0.0051 24 1 -0.3634 0.0050 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5096 27 1 1.6443 2.1382 -0.0004 28 1 4.5352 2.7994 -1.0390 29 1 5.2969 2.3478 0.5050 30 1 3.7713 3.2648 0.4999 31 1 5.8970 -0.1138 -2.0058 32 1 8.2461 0.6830 -0.6556 33 1 8.1702 -1.0953 -0.6473 34 1 7.9538 -1.0968 -3.1178 35 1 8.0297 0.6816 -3.1254 36 1 10.3030 -0.3000 -1.7673 37 1 13.5161 -0.4511 -4.9324 38 1 4.3294 -2.8616 1.0413 39 1 3.5386 -3.2766 -0.4983 40 1 5.1203 -2.4603 -0.5019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131560633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:36 Heat of formation + Delta-G solvation = -26.487306 kcal Electronic energy + Delta-G solvation = -20829.935770 eV Core-core repulsion = 17643.461603 eV Total energy + Delta-G solvation = -3186.474166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96275 -40.26679 -37.49468 -35.59832 -35.28960 -34.77887 -33.43195 -30.46628 -29.87604 -28.80434 -28.13277 -25.40158 -23.59216 -23.08322 -22.25225 -21.46200 -19.90613 -18.75434 -18.16244 -17.38494 -16.51080 -16.46870 -16.06931 -15.85299 -15.65212 -15.44346 -15.00391 -14.73757 -14.45308 -14.31422 -14.14028 -13.93880 -13.74402 -13.47414 -13.21883 -13.19309 -13.01180 -12.73771 -12.73081 -12.69417 -12.61900 -12.09413 -11.83609 -11.41948 -11.04593 -10.58510 -10.49349 -10.27559 -9.84927 -9.37487 -8.05657 -5.41304 -0.19724 0.12819 1.34502 1.39247 1.41174 1.48297 1.93812 2.46539 2.54468 3.12549 3.26207 3.43167 3.55740 3.59672 3.77259 3.96650 4.02927 4.16966 4.30451 4.31541 4.46656 4.51500 4.54059 4.55552 4.61762 4.67582 4.81353 4.92293 4.96211 5.04884 5.06683 5.12507 5.15463 5.20084 5.23939 5.63860 5.71724 6.16991 6.32853 6.87791 6.99512 7.03419 7.76744 7.94616 9.15123 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.003212 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.831744 B = 8715.150471 C = 8802.091407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.139 3.861 3 C -0.177 4.177 4 C -0.005 4.005 5 C -0.124 4.124 6 C -0.208 4.208 7 C 0.579 3.421 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.121 3.879 11 C 0.151 3.849 12 N -0.758 5.758 13 C -0.238 4.238 14 H 0.063 0.937 15 C -0.060 4.060 16 N -0.980 5.980 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.252 1.252 21 C 0.162 3.838 22 C -0.110 4.110 23 N -0.509 5.509 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.175 0.825 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.415 0.585 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.367 0.633 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.954 3.733 11.570 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.013 4.013 5 C -0.180 4.180 6 C -0.213 4.213 7 C 0.365 3.635 8 O -0.451 6.451 9 N -0.353 5.353 10 C -0.003 4.003 11 C 0.024 3.976 12 N -0.404 5.404 13 C -0.368 4.368 14 H 0.081 0.919 15 C -0.252 4.252 16 N -0.630 5.630 17 Si 0.780 3.220 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.177 1.177 21 C 0.024 3.976 22 C -0.167 4.167 23 N -0.220 5.220 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.192 0.808 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.200 0.800 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.966 2.952 12.071 29.692 hybrid contribution 1.560 0.539 0.197 1.662 sum -25.407 3.491 12.268 28.429 Atomic orbital electron populations 1.20870 0.85961 1.04854 1.04307 1.22093 0.98863 0.87841 0.90983 1.22112 0.92926 1.00742 1.03868 1.20618 0.94803 0.94233 0.91639 1.20981 0.99407 0.93271 1.04327 1.20565 0.93016 0.95885 1.11882 1.18194 0.86986 0.74903 0.83448 1.90794 1.70358 1.51278 1.32632 1.45776 1.06991 1.73667 1.08863 1.21323 0.79404 1.02232 0.97329 1.20815 0.83136 0.99841 0.93795 1.42528 1.02467 1.91114 1.04322 1.18992 0.89880 1.41806 0.86167 0.91921 1.25491 0.97287 1.02301 1.00096 1.69871 1.07415 1.59136 1.26610 0.85447 0.78036 0.78284 0.80269 1.20365 1.22080 1.17697 1.21445 0.89334 0.94853 0.91946 1.20827 0.99822 0.92249 1.03816 1.67440 1.08503 1.30472 1.15608 0.89023 0.87908 0.90530 0.80762 0.88499 0.92904 0.87888 0.74821 0.91613 0.91534 0.94091 0.94090 0.79964 0.93171 0.89863 0.88626 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 71.24 0.72 -0.23 16 2 C 0.14 2.36 6.78 42.57 0.29 2.64 16 3 C -0.18 -2.61 9.43 22.33 0.21 -2.40 16 4 C 0.00 -0.09 5.95 -19.40 -0.12 -0.21 16 5 C -0.12 -1.94 9.69 71.24 0.69 -1.25 16 6 C -0.21 -4.98 5.65 -20.00 -0.11 -5.10 16 7 C 0.58 16.12 4.35 86.78 0.38 16.50 16 8 O -0.57 -20.46 17.11 -3.90 -0.07 -20.53 16 9 N -0.70 -17.48 5.55 -466.00 -2.59 -20.06 16 10 C 0.12 3.64 5.79 86.38 0.50 4.14 16 11 C 0.15 5.28 6.37 86.38 0.55 5.83 16 12 N -0.76 -34.61 5.41 -343.46 -1.86 -36.46 16 13 C -0.24 -13.34 10.47 84.03 0.88 -12.46 16 14 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 15 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 16 N -0.98 -62.26 13.97 21.65 0.30 -61.95 16 17 Si 0.95 45.23 27.73 68.60 1.90 47.14 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 21 C 0.16 3.83 6.82 42.89 0.29 4.12 16 22 C -0.11 -2.31 9.79 71.24 0.70 -1.62 16 23 N -0.51 -11.34 10.17 -171.07 -1.74 -13.08 16 24 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.10 0.43 8.08 -2.39 -0.02 0.41 16 26 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.10 7.19 -2.39 -0.02 1.09 16 30 H 0.10 1.09 8.10 -2.38 -0.02 1.07 16 31 H 0.42 8.36 8.46 -92.71 -0.78 7.57 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.37 16.19 5.53 -92.71 -0.51 15.68 16 37 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.55 7.07 -2.39 -0.02 1.53 16 Total: -1.00 -74.65 339.56 1.10 -73.55 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.30 Total: 24.46 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.45 Total: 6.95 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.88 Total: -131.56 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.07 Total: -20.53 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.14 kcal Total: -74.65 1.10 -73.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131560633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.058 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds