Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35545 * 117.00287 * 2 1 4 4 N 1.33041 * 120.46257 * 0.25626 * 3 2 1 5 5 C 1.31742 * 120.90696 * 180.26346 * 4 3 2 6 6 N 1.31760 * 121.89537 * 359.73601 * 5 4 3 7 7 C 1.33118 * 120.83049 * 359.97438 * 6 5 4 8 8 N 1.38606 * 120.49646 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99881 * 0.02562 * 8 7 6 10 10 H 1.08997 * 109.41563 * 324.86560 * 9 8 7 11 11 C 1.52964 * 109.40930 * 84.65403 * 9 8 7 12 12 C 1.53224 * 109.40126 * 183.70603 * 11 9 8 13 13 C 1.51269 * 108.53782 * 305.36577 * 12 11 9 14 14 C 1.37875 * 120.85589 * 231.33089 * 13 12 11 15 15 N 1.31509 * 120.00007 * 180.02562 * 14 13 12 16 16 Si 1.86797 * 119.99712 * 0.02562 * 14 13 12 17 17 H 1.48500 * 109.47391 * 90.00106 * 16 14 13 18 18 H 1.48501 * 109.47440 * 210.00087 * 16 14 13 19 19 H 1.48504 * 109.47105 * 330.00160 * 16 14 13 20 20 C 1.51272 * 118.29534 * 51.35084 * 13 12 11 21 21 C 1.52952 * 109.41389 * 205.00290 * 9 8 7 22 22 C 1.38875 * 120.46441 * 180.02562 * 3 2 1 23 23 C 1.50703 * 120.85754 * 0.02562 * 22 3 2 24 24 H 1.08999 * 109.47238 * 300.00258 * 1 2 3 25 25 H 1.09002 * 109.47364 * 59.99689 * 1 2 3 26 26 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.05124 * 179.70983 * 5 4 3 28 28 H 0.96999 * 119.99719 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.48233 * 303.67996 * 11 9 8 30 30 H 1.08996 * 109.48357 * 63.71924 * 11 9 8 31 31 H 1.09002 * 109.62623 * 185.65838 * 12 11 9 32 32 H 1.08995 * 109.62970 * 65.08630 * 12 11 9 33 33 H 0.97006 * 119.99466 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.62562 * 188.93547 * 20 13 12 35 35 H 1.09001 * 109.78294 * 68.46206 * 20 13 12 36 36 H 1.09003 * 109.48565 * 296.28210 * 21 9 8 37 37 H 1.09006 * 109.48242 * 56.30595 * 21 9 8 38 38 H 1.09002 * 109.47152 * 269.71771 * 23 22 3 39 39 H 1.09001 * 109.46980 * 149.71871 * 23 22 3 40 40 H 1.09004 * 109.47113 * 29.71852 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3289 2.3293 0.0051 5 6 1.9179 3.5077 0.0000 6 7 3.2298 3.6303 -0.0052 7 6 4.0154 2.5556 -0.0050 8 7 5.3947 2.6926 -0.0110 9 6 5.9982 4.0276 -0.0172 10 1 5.3789 4.7024 -0.6081 11 6 6.0910 4.5501 1.4174 12 6 6.6361 5.9820 1.4033 13 6 7.9485 5.9895 0.6512 14 6 9.0773 6.5561 1.2042 15 7 10.2095 6.5538 0.5352 16 14 8.9983 7.3271 2.9039 17 1 9.3142 6.2998 3.9286 18 1 9.9846 8.4337 2.9919 19 1 7.6331 7.8607 3.1424 20 6 7.9907 5.3599 -0.7236 21 6 7.3964 3.9506 -0.6324 22 6 3.4306 1.2915 -0.0005 23 6 4.2803 0.0469 -0.0017 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.3079 4.3989 -0.0004 28 1 5.9603 1.9046 -0.0112 29 1 5.1002 4.5428 1.8718 30 1 6.7603 3.9118 1.9942 31 1 6.7985 6.3220 2.4261 32 1 5.9245 6.6398 0.9045 33 1 11.0035 6.9528 0.9242 34 1 9.0234 5.3002 -1.0674 35 1 7.4065 5.9591 -1.4220 36 1 8.0349 3.3265 -0.0072 37 1 7.3309 3.5181 -1.6309 38 1 4.4898 -0.2510 1.0257 39 1 5.2179 0.2475 -0.5202 40 1 3.7478 -0.7561 -0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -3.938439 kcal Electronic energy + Delta-G solvation = -21656.443764 eV Core-core repulsion = 18470.947390 eV Total energy + Delta-G solvation = -3185.496374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04229 -38.64768 -37.42847 -35.00406 -33.02003 -32.30210 -30.86623 -29.65722 -27.87587 -27.44070 -26.48099 -23.16837 -22.64045 -21.57366 -21.45482 -19.57003 -18.68226 -17.66671 -16.53653 -16.21656 -15.73421 -15.08548 -14.52124 -14.37981 -14.25005 -14.22746 -13.89738 -13.29621 -12.94576 -12.80757 -12.48639 -12.36038 -12.13242 -12.02016 -11.85397 -11.57825 -11.15768 -10.91875 -10.73393 -10.50286 -10.43994 -10.08482 -9.96861 -9.55317 -9.12299 -9.02927 -8.93947 -8.64805 -8.48327 -7.69922 -6.12084 -4.02597 1.24345 1.61672 2.86455 3.26264 3.35476 3.37866 3.52495 4.05719 4.28043 4.37623 4.63579 5.00537 5.02080 5.15820 5.16403 5.16790 5.36390 5.45576 5.64896 5.70744 5.86959 5.91442 6.00614 6.18039 6.20955 6.46610 6.59121 6.70168 6.84095 6.88991 6.96378 7.00346 7.10868 7.21299 7.43081 7.49621 7.63925 7.68829 7.77543 7.87010 8.36266 8.50499 8.94732 9.53275 10.97514 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.003993 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.038999 B = 7010.404839 C = 7312.353431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.379 3.621 4 N -0.622 5.622 5 C 0.366 3.634 6 N -0.581 5.581 7 C 0.467 3.533 8 N -0.696 5.696 9 C 0.161 3.839 10 H 0.083 0.917 11 C -0.111 4.111 12 C -0.012 4.012 13 C -0.489 4.489 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.266 1.266 20 C 0.015 3.985 21 C -0.116 4.116 22 C -0.290 4.290 23 C -0.083 4.083 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.195 0.805 28 H 0.405 0.595 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.006 0.994 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -11.524 -1.014 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.209 6.209 3 C 0.196 3.804 4 N -0.357 5.357 5 C 0.076 3.924 6 N -0.309 5.309 7 C 0.223 3.777 8 N -0.325 5.325 9 C 0.058 3.942 10 H 0.101 0.899 11 C -0.151 4.151 12 C -0.050 4.050 13 C -0.508 4.508 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.191 1.191 20 C -0.023 4.023 21 C -0.155 4.155 22 C -0.302 4.302 23 C -0.141 4.141 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.211 0.789 28 H 0.242 0.758 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.592 -10.814 -1.017 18.191 hybrid contribution 0.448 -0.505 0.996 1.203 sum -14.144 -11.319 -0.022 18.115 Atomic orbital electron populations 1.22848 0.77277 1.02680 1.02602 1.86179 1.22794 1.24631 1.87300 1.19435 0.88301 0.84708 0.87908 1.68055 1.41250 0.98897 1.27487 1.24304 0.87485 0.93602 0.87041 1.68106 1.06147 1.31877 1.24773 1.18179 0.86536 0.87442 0.85570 1.45307 1.01023 1.10611 1.75524 1.21127 0.94358 0.80762 0.97941 0.89858 1.21910 0.98440 0.99781 0.94920 1.19703 0.96609 0.91837 0.96849 1.20052 0.92870 1.36582 1.01280 1.24839 0.94933 0.95423 0.97478 1.69833 1.00421 1.44656 1.37913 0.86658 0.77748 0.79264 0.84688 1.20491 1.21659 1.19131 1.19319 0.97971 0.89260 0.95778 1.21959 0.93968 1.02151 0.97383 1.19763 0.92162 0.96267 1.21985 1.20263 0.97973 0.93997 1.01879 0.92229 0.92267 0.88814 0.78881 0.75786 0.94409 0.93366 0.95197 0.96124 0.92592 0.92135 0.97520 0.92801 0.94651 0.91840 0.92176 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.41 101.05 1.05 1.43 16 2 O -0.30 -3.82 9.65 -18.33 -0.18 -3.99 16 3 C 0.38 5.47 7.49 -16.79 -0.13 5.34 16 4 N -0.62 -8.88 9.38 -14.72 -0.14 -9.02 16 5 C 0.37 5.17 12.28 -92.23 -1.13 4.04 16 6 N -0.58 -9.65 9.35 -13.86 -0.13 -9.78 16 7 C 0.47 7.54 7.46 -154.73 -1.15 6.38 16 8 N -0.70 -11.15 5.13 -53.87 -0.28 -11.43 16 9 C 0.16 3.05 2.38 -67.97 -0.16 2.89 16 10 H 0.08 1.71 7.57 -51.93 -0.39 1.31 16 11 C -0.11 -2.28 5.52 -26.63 -0.15 -2.43 16 12 C -0.01 -0.27 5.59 -27.49 -0.15 -0.43 16 13 C -0.49 -12.62 5.51 -98.92 -0.55 -13.17 16 14 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 15 N -0.89 -25.25 12.73 55.43 0.71 -24.54 16 16 Si 0.89 21.01 27.27 -169.99 -4.64 16.38 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.15 6.46 56.52 0.37 -5.78 16 20 C 0.01 0.35 5.97 -27.49 -0.16 0.19 16 21 C -0.12 -2.33 5.40 -26.64 -0.14 -2.47 16 22 C -0.29 -4.21 5.95 -104.00 -0.62 -4.83 16 23 C -0.08 -0.96 9.44 36.01 0.34 -0.62 16 24 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 28 H 0.40 5.65 6.72 -40.82 -0.27 5.37 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.69 4.78 -51.93 -0.25 0.44 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 6.67 -51.93 -0.35 0.29 16 40 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -29.29 321.21 -8.71 -38.00 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.84 Total: 1.28 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.05 Total: -1.74 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.16 Total: -54.76 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.18 Total: -3.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.64 Total: 16.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.29 -8.71 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.060 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds