Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35545 * 117.00287 * 2 1 4 4 N 1.33041 * 120.46257 * 0.25626 * 3 2 1 5 5 C 1.31742 * 120.90696 * 180.26346 * 4 3 2 6 6 N 1.31760 * 121.89537 * 359.73601 * 5 4 3 7 7 C 1.33118 * 120.83049 * 359.97438 * 6 5 4 8 8 N 1.38606 * 120.49646 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99881 * 0.02562 * 8 7 6 10 10 H 1.08997 * 109.41563 * 324.86560 * 9 8 7 11 11 C 1.52964 * 109.40930 * 84.65403 * 9 8 7 12 12 C 1.53224 * 109.40126 * 183.70603 * 11 9 8 13 13 C 1.51269 * 108.53782 * 305.36577 * 12 11 9 14 14 C 1.37875 * 120.85589 * 231.33089 * 13 12 11 15 15 N 1.31509 * 120.00007 * 180.02562 * 14 13 12 16 16 Si 1.86797 * 119.99712 * 0.02562 * 14 13 12 17 17 H 1.48500 * 109.47391 * 90.00106 * 16 14 13 18 18 H 1.48501 * 109.47440 * 210.00087 * 16 14 13 19 19 H 1.48504 * 109.47105 * 330.00160 * 16 14 13 20 20 C 1.51272 * 118.29534 * 51.35084 * 13 12 11 21 21 C 1.52952 * 109.41389 * 205.00290 * 9 8 7 22 22 C 1.38875 * 120.46441 * 180.02562 * 3 2 1 23 23 C 1.50703 * 120.85754 * 0.02562 * 22 3 2 24 24 H 1.08999 * 109.47238 * 300.00258 * 1 2 3 25 25 H 1.09002 * 109.47364 * 59.99689 * 1 2 3 26 26 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.05124 * 179.70983 * 5 4 3 28 28 H 0.96999 * 119.99719 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.48233 * 303.67996 * 11 9 8 30 30 H 1.08996 * 109.48357 * 63.71924 * 11 9 8 31 31 H 1.09002 * 109.62623 * 185.65838 * 12 11 9 32 32 H 1.08995 * 109.62970 * 65.08630 * 12 11 9 33 33 H 0.97006 * 119.99466 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.62562 * 188.93547 * 20 13 12 35 35 H 1.09001 * 109.78294 * 68.46206 * 20 13 12 36 36 H 1.09003 * 109.48565 * 296.28210 * 21 9 8 37 37 H 1.09006 * 109.48242 * 56.30595 * 21 9 8 38 38 H 1.09002 * 109.47152 * 269.71771 * 23 22 3 39 39 H 1.09001 * 109.46980 * 149.71871 * 23 22 3 40 40 H 1.09004 * 109.47113 * 29.71852 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3289 2.3293 0.0051 5 6 1.9179 3.5077 0.0000 6 7 3.2298 3.6303 -0.0052 7 6 4.0154 2.5556 -0.0050 8 7 5.3947 2.6926 -0.0110 9 6 5.9982 4.0276 -0.0172 10 1 5.3789 4.7024 -0.6081 11 6 6.0910 4.5501 1.4174 12 6 6.6361 5.9820 1.4033 13 6 7.9485 5.9895 0.6512 14 6 9.0773 6.5561 1.2042 15 7 10.2095 6.5538 0.5352 16 14 8.9983 7.3271 2.9039 17 1 9.3142 6.2998 3.9286 18 1 9.9846 8.4337 2.9919 19 1 7.6331 7.8607 3.1424 20 6 7.9907 5.3599 -0.7236 21 6 7.3964 3.9506 -0.6324 22 6 3.4306 1.2915 -0.0005 23 6 4.2803 0.0469 -0.0017 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.3079 4.3989 -0.0004 28 1 5.9603 1.9046 -0.0112 29 1 5.1002 4.5428 1.8718 30 1 6.7603 3.9118 1.9942 31 1 6.7985 6.3220 2.4261 32 1 5.9245 6.6398 0.9045 33 1 11.0035 6.9528 0.9242 34 1 9.0234 5.3002 -1.0674 35 1 7.4065 5.9591 -1.4220 36 1 8.0349 3.3265 -0.0072 37 1 7.3309 3.5181 -1.6309 38 1 4.4898 -0.2510 1.0257 39 1 5.2179 0.2475 -0.5202 40 1 3.7478 -0.7561 -0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = -21.578943 kcal Electronic energy + Delta-G solvation = -21657.208714 eV Core-core repulsion = 18470.947390 eV Total energy + Delta-G solvation = -3186.261324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13808 -39.77617 -38.85173 -36.44078 -34.38297 -33.71291 -32.36171 -31.41775 -29.02881 -28.66717 -27.64227 -24.56125 -23.79928 -23.19102 -23.06156 -21.21750 -19.80267 -18.83545 -18.14854 -17.20276 -17.15621 -16.39316 -16.27236 -15.53558 -15.49171 -15.26525 -15.00249 -14.88338 -14.54912 -14.23306 -13.95719 -13.81842 -13.50938 -13.21504 -12.97193 -12.81392 -12.73972 -12.58705 -12.43313 -11.93653 -11.86513 -11.71635 -11.49177 -11.32457 -10.86503 -10.56657 -10.53211 -10.20049 -10.04370 -8.93172 -8.16178 -6.09668 0.15783 0.46142 1.38496 1.42742 1.51024 1.84498 2.37169 2.41985 2.94065 3.12512 3.29638 3.51215 3.94300 4.06374 4.08162 4.23596 4.42075 4.45933 4.48973 4.55878 4.73258 4.74834 4.78752 4.89969 4.96464 4.99913 5.02107 5.10136 5.20151 5.26319 5.27394 5.42338 5.59384 5.64409 5.77149 5.78763 5.88916 6.10884 6.25528 6.36324 6.67400 6.96396 7.37715 7.48540 8.94605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.003993 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.038999 B = 7010.404839 C = 7312.353431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.370 3.630 4 N -0.621 5.621 5 C 0.361 3.639 6 N -0.608 5.608 7 C 0.452 3.548 8 N -0.693 5.693 9 C 0.179 3.821 10 H 0.069 0.931 11 C -0.102 4.102 12 C -0.013 4.013 13 C -0.497 4.497 14 C 0.024 3.976 15 N -0.930 5.930 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.256 1.256 20 C 0.011 3.989 21 C -0.104 4.104 22 C -0.293 4.293 23 C -0.081 4.081 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.224 0.776 28 H 0.415 0.585 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.031 0.969 35 H 0.000 1.000 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.385 -12.969 -0.420 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.187 3.813 4 N -0.356 5.356 5 C 0.072 3.928 6 N -0.336 5.336 7 C 0.209 3.791 8 N -0.324 5.324 9 C 0.075 3.925 10 H 0.087 0.913 11 C -0.141 4.141 12 C -0.051 4.051 13 C -0.517 4.517 14 C -0.174 4.174 15 N -0.570 5.570 16 Si 0.765 3.235 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.181 1.181 20 C -0.027 4.027 21 C -0.142 4.142 22 C -0.304 4.304 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.240 0.760 28 H 0.254 0.746 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.545 -12.293 -0.420 20.617 hybrid contribution 0.892 -0.105 0.742 1.165 sum -15.653 -12.399 0.323 19.971 Atomic orbital electron populations 1.23117 0.75425 1.04810 1.02474 1.86180 1.24589 1.23627 1.86897 1.19680 0.88649 0.85329 0.87655 1.68131 1.41271 0.99024 1.27182 1.24902 0.87116 0.94588 0.86216 1.68105 1.07252 1.32590 1.25690 1.18331 0.86325 0.88172 0.86277 1.44922 1.01321 1.09602 1.76588 1.20645 0.93349 0.82126 0.96425 0.91254 1.21765 0.98420 0.97848 0.96078 1.19701 0.95359 0.93742 0.96309 1.20621 0.93776 1.35366 1.01905 1.25559 0.94899 0.96338 1.00651 1.69960 1.01082 1.46449 1.39503 0.85842 0.77986 0.78525 0.81158 1.19968 1.21914 1.18083 1.19272 0.96505 0.91859 0.95093 1.21725 0.94424 0.99298 0.98764 1.20000 0.92711 0.96601 1.21092 1.20312 0.98006 0.92942 1.02611 0.92375 0.92324 0.85639 0.76032 0.74555 0.93694 0.93618 0.95262 0.96268 0.92815 0.95052 0.98141 0.92967 0.92618 0.91077 0.91220 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.41 113.37 1.18 1.74 16 2 O -0.31 -7.00 9.65 -88.50 -0.85 -7.85 16 3 C 0.37 9.91 7.49 84.66 0.63 10.55 16 4 N -0.62 -16.52 9.38 -313.04 -2.94 -19.45 16 5 C 0.36 9.55 12.28 180.91 2.22 11.77 16 6 N -0.61 -19.23 9.35 -197.78 -1.85 -21.08 16 7 C 0.45 13.80 7.46 133.02 0.99 14.80 16 8 N -0.69 -20.97 5.13 -324.35 -1.66 -22.63 16 9 C 0.18 6.55 2.38 44.96 0.11 6.66 16 10 H 0.07 2.77 7.57 -2.39 -0.02 2.75 16 11 C -0.10 -4.04 5.52 30.66 0.17 -3.87 16 12 C -0.01 -0.59 5.59 30.10 0.17 -0.42 16 13 C -0.50 -25.78 5.51 -16.17 -0.09 -25.87 16 14 C 0.02 1.29 5.46 84.65 0.46 1.76 16 15 N -0.93 -53.97 12.73 21.45 0.27 -53.69 16 16 Si 0.94 43.13 27.27 68.60 1.87 45.00 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.26 -11.25 6.46 99.48 0.64 -10.60 16 20 C 0.01 0.53 5.97 30.11 0.18 0.71 16 21 C -0.10 -4.08 5.40 30.65 0.17 -3.91 16 22 C -0.29 -7.90 5.95 -19.46 -0.12 -8.02 16 23 C -0.08 -1.68 9.44 71.24 0.67 -1.00 16 24 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 25 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 26 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.22 4.22 8.06 -2.91 -0.02 4.19 16 28 H 0.42 10.69 6.72 -92.71 -0.62 10.06 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.31 4.78 -2.39 -0.01 1.30 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 34 H 0.03 1.69 7.07 -2.39 -0.02 1.68 16 35 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.30 6.67 -2.39 -0.02 1.28 16 40 H 0.08 1.48 7.62 -2.38 -0.02 1.46 16 Total: -1.00 -62.59 321.21 1.95 -60.64 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.37 Total: 14.20 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.75 Total: 4.87 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -6.18 Total: -116.86 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.85 Total: -7.85 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.87 Total: 45.00 kcal Total: -62.59 1.95 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.056 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds