Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99693 * 2 1 4 4 O 1.42900 * 109.47008 * 135.00443 * 3 2 1 5 5 C 1.35516 * 116.99999 * 180.02562 * 4 3 2 6 6 C 1.39434 * 120.46637 * 179.97438 * 5 4 3 7 7 C 1.38193 * 118.50816 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.36817 * 179.97438 * 7 6 5 9 9 N 1.32465 * 119.26592 * 359.72761 * 7 6 5 10 10 C 1.32469 * 120.88787 * 0.54457 * 9 7 6 11 11 N 1.38400 * 119.18501 * 179.72075 * 10 9 7 12 12 C 1.46498 * 119.99560 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72332 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00157 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00386 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47111 * 89.99562 * 19 17 15 21 21 H 1.48494 * 109.47201 * 210.00305 * 19 17 15 22 22 H 1.48506 * 109.46710 * 330.00066 * 19 17 15 23 23 N 1.32483 * 121.62215 * 359.44164 * 10 9 7 24 24 H 1.08006 * 119.99986 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00589 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99928 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47196 * 14.99913 * 3 2 1 28 28 H 1.09002 * 109.46826 * 255.00222 * 3 2 1 29 29 H 1.08002 * 120.74503 * 0.03519 * 6 5 4 30 30 H 1.09001 * 109.47230 * 89.99636 * 8 7 6 31 31 H 1.08996 * 109.47172 * 209.99883 * 8 7 6 32 32 H 1.08998 * 109.47172 * 329.99655 * 8 7 6 33 33 H 0.97001 * 119.99995 * 359.72512 * 11 10 9 34 34 H 1.09004 * 109.46963 * 299.72128 * 12 11 10 35 35 H 1.08994 * 109.47567 * 59.72280 * 12 11 10 36 36 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 37 37 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 38 38 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 39 39 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 40 40 H 0.96996 * 120.00642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9068 2.3423 1.0785 6 6 4.9646 2.3591 1.9869 7 6 5.7337 3.5032 2.0825 8 6 6.8868 3.5673 3.0507 9 7 5.4492 4.5411 1.3102 10 6 4.4345 4.4982 0.4598 11 7 4.1653 5.6051 -0.3262 12 6 3.0471 5.5771 -1.2722 13 6 2.9652 6.9178 -2.0047 14 6 1.7977 6.8885 -2.9933 15 6 1.7167 8.2093 -3.7143 16 1 2.4270 8.9914 -3.4902 17 6 0.7363 8.4190 -4.6607 18 7 0.6658 9.5715 -5.2904 19 14 -0.4920 7.0661 -5.0489 20 1 -1.6722 7.1985 -4.1575 21 1 -0.9252 7.1821 -6.4645 22 1 0.1453 5.7422 -4.8331 23 7 3.6744 3.4198 0.3392 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4754 1.4868 -0.9927 29 1 5.1780 1.4972 2.6018 30 1 7.7948 3.2199 2.5578 31 1 7.0249 4.5960 3.3836 32 1 6.6746 2.9325 3.9109 33 1 4.7143 6.4009 -0.2474 34 1 3.2032 4.7768 -1.9956 35 1 2.1175 5.4014 -0.7310 36 1 2.8091 7.7182 -1.2813 37 1 3.8948 7.0937 -2.5460 38 1 1.9542 6.0883 -3.7166 39 1 0.8679 6.7126 -2.4522 40 1 -0.0241 9.7192 -5.9560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157640892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = 22.580113 kcal Electronic energy + Delta-G solvation = -20500.302869 eV Core-core repulsion = 17315.956425 eV Total energy + Delta-G solvation = -3184.346443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15419 -38.85641 -36.59438 -34.53286 -34.11113 -33.11084 -31.94984 -30.59010 -28.69183 -27.08085 -26.41800 -23.47337 -23.14481 -21.61709 -20.39807 -20.27187 -18.68930 -17.50013 -16.77702 -16.52782 -16.31933 -15.54827 -15.30166 -15.09996 -14.64870 -14.45595 -14.02290 -13.69752 -13.36540 -13.22158 -13.05752 -12.70030 -12.50560 -12.29143 -11.94586 -11.73206 -11.38265 -11.12576 -10.95101 -10.84497 -10.26114 -10.06270 -9.94975 -9.83466 -9.73252 -9.52436 -9.25182 -9.23035 -8.57520 -7.96540 -6.07817 -4.06648 1.17980 1.30341 1.76163 2.82797 3.06359 3.28530 3.36195 3.39349 3.88246 4.04152 4.42044 4.53296 4.70596 4.80764 4.85120 5.19200 5.19864 5.25131 5.25935 5.35490 5.37273 5.48501 5.51415 5.60165 5.63664 5.71793 5.98702 6.12446 6.22314 6.31938 6.42746 6.43853 6.74080 6.82020 6.94970 7.19991 7.25001 7.33542 7.59193 7.74450 8.40530 8.49155 8.96422 9.54057 11.05517 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.004050 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.117138 B = 6911.535874 C = 8840.690556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.160 4.160 3 C 0.095 3.905 4 O -0.298 6.298 5 C 0.405 3.595 6 C -0.315 4.315 7 C 0.240 3.760 8 C -0.102 4.102 9 N -0.595 5.595 10 C 0.605 3.395 11 N -0.688 5.688 12 C 0.132 3.868 13 C -0.115 4.115 14 C -0.008 4.008 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 N -0.623 5.623 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -18.582 15.609 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.021 3.979 4 O -0.202 6.202 5 C 0.217 3.783 6 C -0.342 4.342 7 C 0.094 3.906 8 C -0.160 4.160 9 N -0.323 5.323 10 C 0.248 3.752 11 N -0.323 5.323 12 C 0.008 3.992 13 C -0.153 4.153 14 C -0.046 4.046 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.189 1.189 23 N -0.364 5.364 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.529 -17.991 14.866 24.234 hybrid contribution -0.587 -0.934 -0.074 1.106 sum 5.942 -18.925 14.792 24.744 Atomic orbital electron populations 1.23920 0.95450 1.02685 0.98535 1.22705 0.95739 0.97667 1.01654 1.21729 0.87365 0.96453 0.92394 1.86227 1.42146 1.33262 1.58606 1.19670 0.86809 0.84327 0.87515 1.21247 1.01545 1.02929 1.08514 1.21120 0.92670 0.86569 0.90259 1.20740 0.94463 1.04207 0.96551 1.67798 1.20773 1.31623 1.12093 1.18907 0.84539 0.85695 0.86101 1.44529 1.34766 1.12982 1.40025 1.21633 0.87379 0.99859 0.90318 1.21731 1.01306 0.93743 0.98541 1.19479 0.92932 0.98147 0.94086 1.21100 1.15444 0.98662 1.20822 0.90967 1.25030 0.97421 0.95419 0.95602 1.69911 1.34445 1.23414 1.26381 0.86775 0.81796 0.83144 0.77571 1.20251 1.21349 1.18946 1.67477 1.35176 1.01715 1.32042 0.87458 0.87999 0.86381 0.90624 0.90200 0.83801 0.89666 0.89904 0.90120 0.74701 0.91903 0.91933 0.92006 0.91977 0.96341 0.96792 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.31 29.01 0.42 -0.98 16 2 C -0.16 -1.50 9.89 -36.02 -0.36 -1.86 16 3 C 0.10 1.11 5.75 36.01 0.21 1.31 16 4 O -0.30 -3.86 10.12 -18.24 -0.18 -4.04 16 5 C 0.41 5.71 7.53 -16.72 -0.13 5.58 16 6 C -0.32 -3.79 9.79 -39.15 -0.38 -4.17 16 7 C 0.24 2.88 6.81 -82.34 -0.56 2.32 16 8 C -0.10 -0.78 10.21 36.00 0.37 -0.41 16 9 N -0.59 -8.67 10.39 -10.22 -0.11 -8.78 16 10 C 0.60 9.53 8.42 -322.86 -2.72 6.81 16 11 N -0.69 -10.47 5.70 -62.32 -0.36 -10.83 16 12 C 0.13 2.16 5.65 -4.04 -0.02 2.14 16 13 C -0.12 -2.16 5.27 -26.73 -0.14 -2.31 16 14 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 15 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 19 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 23 N -0.62 -9.76 8.52 -13.99 -0.12 -9.88 16 24 H 0.11 0.69 8.06 -52.48 -0.42 0.27 16 25 H 0.10 0.84 7.90 -52.49 -0.41 0.42 16 26 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 27 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 28 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.42 5.76 8.59 -40.82 -0.35 5.41 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -31.97 344.35 -9.51 -41.48 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.17 Total: 2.03 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.86 Total: -5.07 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.19 Total: -56.44 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.97 -9.51 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.058 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds