Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99693 * 2 1 4 4 O 1.42900 * 109.47008 * 135.00443 * 3 2 1 5 5 C 1.35516 * 116.99999 * 180.02562 * 4 3 2 6 6 C 1.39434 * 120.46637 * 179.97438 * 5 4 3 7 7 C 1.38193 * 118.50816 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.36817 * 179.97438 * 7 6 5 9 9 N 1.32465 * 119.26592 * 359.72761 * 7 6 5 10 10 C 1.32469 * 120.88787 * 0.54457 * 9 7 6 11 11 N 1.38400 * 119.18501 * 179.72075 * 10 9 7 12 12 C 1.46498 * 119.99560 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72332 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00157 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00386 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47111 * 89.99562 * 19 17 15 21 21 H 1.48494 * 109.47201 * 210.00305 * 19 17 15 22 22 H 1.48506 * 109.46710 * 330.00066 * 19 17 15 23 23 N 1.32483 * 121.62215 * 359.44164 * 10 9 7 24 24 H 1.08006 * 119.99986 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00589 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99928 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47196 * 14.99913 * 3 2 1 28 28 H 1.09002 * 109.46826 * 255.00222 * 3 2 1 29 29 H 1.08002 * 120.74503 * 0.03519 * 6 5 4 30 30 H 1.09001 * 109.47230 * 89.99636 * 8 7 6 31 31 H 1.08996 * 109.47172 * 209.99883 * 8 7 6 32 32 H 1.08998 * 109.47172 * 329.99655 * 8 7 6 33 33 H 0.97001 * 119.99995 * 359.72512 * 11 10 9 34 34 H 1.09004 * 109.46963 * 299.72128 * 12 11 10 35 35 H 1.08994 * 109.47567 * 59.72280 * 12 11 10 36 36 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 37 37 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 38 38 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 39 39 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 40 40 H 0.96996 * 120.00642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9068 2.3423 1.0785 6 6 4.9646 2.3591 1.9869 7 6 5.7337 3.5032 2.0825 8 6 6.8868 3.5673 3.0507 9 7 5.4492 4.5411 1.3102 10 6 4.4345 4.4982 0.4598 11 7 4.1653 5.6051 -0.3262 12 6 3.0471 5.5771 -1.2722 13 6 2.9652 6.9178 -2.0047 14 6 1.7977 6.8885 -2.9933 15 6 1.7167 8.2093 -3.7143 16 1 2.4270 8.9914 -3.4902 17 6 0.7363 8.4190 -4.6607 18 7 0.6658 9.5715 -5.2904 19 14 -0.4920 7.0661 -5.0489 20 1 -1.6722 7.1985 -4.1575 21 1 -0.9252 7.1821 -6.4645 22 1 0.1453 5.7422 -4.8331 23 7 3.6744 3.4198 0.3392 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4754 1.4868 -0.9927 29 1 5.1780 1.4972 2.6018 30 1 7.7948 3.2199 2.5578 31 1 7.0249 4.5960 3.3836 32 1 6.6746 2.9325 3.9109 33 1 4.7143 6.4009 -0.2474 34 1 3.2032 4.7768 -1.9956 35 1 2.1175 5.4014 -0.7310 36 1 2.8091 7.7182 -1.2813 37 1 3.8948 7.0937 -2.5460 38 1 1.9542 6.0883 -3.7166 39 1 0.8679 6.7126 -2.4522 40 1 -0.0241 9.7192 -5.9560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = 2.939152 kcal Electronic energy + Delta-G solvation = -20501.154565 eV Core-core repulsion = 17315.956425 eV Total energy + Delta-G solvation = -3185.198139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18039 -39.83315 -37.86145 -35.68364 -35.31897 -34.44378 -33.52990 -31.89358 -29.51228 -28.73696 -27.28850 -24.96414 -24.30572 -22.76128 -22.07481 -21.01016 -19.77433 -18.91372 -18.47002 -17.51164 -17.41462 -16.59348 -16.45979 -16.30602 -16.07944 -15.67623 -15.46435 -14.79675 -14.49503 -14.22474 -14.20667 -13.87026 -13.76322 -13.55973 -13.07939 -12.89116 -12.75405 -12.61348 -12.11966 -11.93994 -11.82958 -11.69413 -11.64283 -11.34969 -11.13791 -10.80509 -10.77037 -10.47106 -10.26123 -9.06714 -8.29983 -6.34629 0.19866 0.24758 1.04621 1.36479 1.38277 1.50175 1.78529 2.07647 2.36029 2.83592 3.05557 3.07009 3.68065 3.78189 3.99027 4.03608 4.07921 4.18285 4.31986 4.34585 4.40743 4.49077 4.54888 4.82090 4.85711 4.87282 4.87934 4.92777 5.00538 5.02288 5.37356 5.43200 5.53618 5.54883 5.60935 5.64767 5.72084 5.90315 6.19239 6.27025 6.50618 6.73533 7.30064 7.32393 8.86733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.004050 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.117138 B = 6911.535874 C = 8840.690556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.174 4.174 3 C 0.096 3.904 4 O -0.299 6.299 5 C 0.385 3.615 6 C -0.308 4.308 7 C 0.232 3.768 8 C -0.098 4.098 9 N -0.608 5.608 10 C 0.589 3.411 11 N -0.690 5.690 12 C 0.152 3.848 13 C -0.103 4.103 14 C -0.007 4.007 15 C -0.534 4.534 16 H 0.034 0.966 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.245 1.245 23 N -0.643 5.643 24 H 0.130 0.870 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -21.392 17.081 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.021 3.979 4 O -0.203 6.203 5 C 0.198 3.802 6 C -0.334 4.334 7 C 0.087 3.913 8 C -0.155 4.155 9 N -0.337 5.337 10 C 0.231 3.769 11 N -0.327 5.327 12 C 0.028 3.972 13 C -0.141 4.141 14 C -0.045 4.045 15 C -0.572 4.572 16 H 0.052 0.948 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.168 1.168 23 N -0.384 5.384 24 H 0.148 0.852 25 H 0.118 0.882 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.191 0.809 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.258 0.742 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.499 -20.833 16.378 27.285 hybrid contribution -0.499 -0.034 -0.459 0.679 sum 5.999 -20.866 15.919 26.922 Atomic orbital electron populations 1.24144 0.95094 1.03689 0.96472 1.22707 0.96109 0.96943 1.03475 1.21766 0.86972 0.97580 0.91567 1.86235 1.42348 1.32849 1.58911 1.20070 0.87731 0.84292 0.88096 1.21638 1.00270 1.03823 1.07693 1.21903 0.93495 0.85809 0.90062 1.20885 0.93202 1.04999 0.96403 1.67865 1.20535 1.32875 1.12426 1.19050 0.85295 0.85786 0.86771 1.44320 1.34702 1.13447 1.40232 1.21232 0.87906 0.97863 0.90243 1.21501 0.99519 0.95281 0.97791 1.19416 0.95025 0.95322 0.94728 1.21470 1.14457 0.99943 1.21281 0.94809 1.26030 0.99797 0.98074 0.95448 1.70068 1.35764 1.25941 1.27475 0.85654 0.79121 0.80405 0.77473 1.19091 1.21051 1.16806 1.67422 1.35753 1.02252 1.32968 0.85196 0.88224 0.85208 0.91662 0.91314 0.80918 0.88086 0.89910 0.87424 0.74199 0.92227 0.92161 0.92130 0.92155 0.95842 0.95948 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 14.31 67.78 0.97 -1.30 16 2 C -0.17 -3.02 9.89 25.65 0.25 -2.77 16 3 C 0.10 2.18 5.75 71.24 0.41 2.59 16 4 O -0.30 -7.46 10.12 -88.19 -0.89 -8.35 16 5 C 0.39 10.48 7.53 84.85 0.64 11.12 16 6 C -0.31 -6.73 9.79 22.55 0.22 -6.51 16 7 C 0.23 5.10 6.81 42.45 0.29 5.39 16 8 C -0.10 -1.18 10.21 71.24 0.73 -0.46 16 9 N -0.61 -17.11 10.39 -186.26 -1.94 -19.04 16 10 C 0.59 18.27 8.42 261.50 2.20 20.47 16 11 N -0.69 -20.84 5.70 -351.09 -2.00 -22.84 16 12 C 0.15 4.91 5.65 86.38 0.49 5.40 16 13 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 14 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 15 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 16 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 17 C 0.00 0.19 5.47 84.65 0.46 0.65 16 18 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 19 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 23 N -0.64 -19.87 8.52 -310.88 -2.65 -22.52 16 24 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 25 H 0.10 1.48 7.90 -2.91 -0.02 1.46 16 26 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.07 1.58 7.84 -2.39 -0.02 1.56 16 28 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 29 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.42 11.61 8.59 -92.71 -0.80 10.81 16 34 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 39 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -70.10 344.35 2.07 -68.03 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.17 Total: 18.15 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 7.19 Total: 0.29 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.29 Total: -124.01 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.89 Total: -8.35 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -70.10 2.07 -68.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.971 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds