Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21297 * 120.00146 * 2 1 4 4 N 1.34781 * 119.99867 * 180.02562 * 2 1 3 5 5 C 1.40156 * 119.99492 * 183.46962 * 4 2 1 6 6 C 1.38864 * 120.51418 * 294.54692 * 5 4 2 7 7 C 1.50693 * 120.77669 * 0.02562 * 6 5 4 8 8 C 1.38807 * 118.44133 * 179.97438 * 6 5 4 9 9 C 1.38035 * 119.39012 * 0.02562 * 8 6 5 10 10 N 1.32021 * 120.98564 * 359.73911 * 9 8 6 11 11 C 1.32286 * 121.69517 * 0.53121 * 10 9 8 12 12 N 1.39181 * 119.74370 * 179.75259 * 11 10 9 13 13 C 1.46493 * 120.00130 * 354.07751 * 12 11 10 14 14 C 1.53001 * 109.47238 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46684 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00450 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99534 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47132 * 89.99893 * 20 18 16 22 22 H 1.48492 * 109.47151 * 209.99670 * 20 18 16 23 23 H 1.48498 * 109.47186 * 330.00323 * 20 18 16 24 24 H 1.09000 * 109.46685 * 269.99701 * 1 2 3 25 25 H 1.08999 * 109.47214 * 30.00198 * 1 2 3 26 26 H 1.08998 * 109.46693 * 150.00019 * 1 2 3 27 27 H 0.96995 * 120.00113 * 3.46174 * 4 2 1 28 28 H 1.08999 * 109.47416 * 96.02154 * 7 6 5 29 29 H 1.09000 * 109.47232 * 216.02267 * 7 6 5 30 30 H 1.09002 * 109.47284 * 336.02115 * 7 6 5 31 31 H 1.07999 * 120.30334 * 179.97438 * 8 6 5 32 32 H 1.08003 * 119.50754 * 180.02562 * 9 8 6 33 33 H 0.97001 * 119.99770 * 174.08080 * 12 11 10 34 34 H 1.08998 * 109.46927 * 60.00050 * 13 12 11 35 35 H 1.09002 * 109.47335 * 300.00202 * 13 12 11 36 36 H 1.09002 * 109.46740 * 300.00098 * 14 13 12 37 37 H 1.08998 * 109.47503 * 59.99934 * 14 13 12 38 38 H 1.08996 * 109.46819 * 299.99657 * 15 14 13 39 39 H 1.09003 * 109.47227 * 60.00003 * 15 14 13 40 40 H 0.96999 * 120.00373 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5805 -1.1683 0.0729 6 6 4.3413 -0.6387 -0.9610 7 6 3.6809 -0.0519 -2.1819 8 6 5.7241 -0.6615 -0.8431 9 6 6.2987 -1.2055 0.2879 10 7 5.5527 -1.6986 1.2592 11 6 4.2318 -1.7026 1.1873 12 7 3.4851 -2.2377 2.2329 13 6 4.1599 -2.9095 3.3462 14 6 3.1175 -3.4023 4.3518 15 6 3.8224 -4.1034 5.5149 16 6 2.7956 -4.5882 6.5057 17 1 1.7454 -4.4141 6.3239 18 6 3.1970 -5.2550 7.6438 19 7 4.4757 -5.4683 7.8645 20 14 1.9242 -5.8566 8.8717 21 1 1.5028 -7.2346 8.5128 22 1 2.5135 -5.8585 10.2347 23 1 0.7445 -4.9552 8.8436 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6973 -2.0065 -0.0516 28 1 3.5959 1.0285 -2.0651 29 1 4.2820 -0.2759 -3.0632 30 1 2.6872 -0.4838 -2.3005 31 1 6.3448 -0.2580 -1.6295 32 1 7.3745 -1.2238 0.3818 33 1 2.5178 -2.1657 2.2245 34 1 4.8361 -2.2094 3.8368 35 1 4.7285 -3.7587 2.9672 36 1 2.5486 -2.5533 4.7309 37 1 2.4416 -4.1025 3.8610 38 1 4.3915 -4.9523 5.1361 39 1 4.4980 -3.4029 6.0057 40 1 4.7581 -5.9377 8.6650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -14.802194 kcal Electronic energy + Delta-G solvation = -20903.375984 eV Core-core repulsion = 17717.408522 eV Total energy + Delta-G solvation = -3185.967462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92081 -39.13716 -36.34822 -35.18798 -33.86519 -32.76664 -31.50946 -30.19251 -28.66771 -27.71461 -26.15501 -23.26028 -23.05818 -21.32927 -20.58046 -20.38903 -17.91116 -17.14484 -17.00329 -16.69669 -16.21681 -15.14506 -14.92794 -14.76140 -14.50453 -14.15397 -14.02032 -13.90748 -13.13525 -13.08215 -12.88820 -12.63970 -12.40785 -12.28739 -11.92996 -11.86896 -11.71558 -10.94295 -10.72904 -10.58213 -10.26132 -10.25847 -10.07217 -9.66284 -9.52686 -9.32849 -9.13413 -8.93673 -8.37804 -7.49414 -6.02388 -4.05433 1.19525 1.50893 2.39803 2.97722 3.29899 3.35923 3.37563 3.40788 3.92149 4.43374 4.54512 4.60039 4.76254 4.90066 5.05053 5.08888 5.21883 5.31789 5.33375 5.48151 5.49658 5.55372 5.73910 5.82794 5.87907 5.93371 6.18644 6.20795 6.35748 6.56613 6.63244 6.80417 6.96688 7.17461 7.34802 7.53541 7.63205 7.76436 7.96537 8.01729 8.35145 8.37992 9.01133 9.58659 11.08900 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.003444 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.395628 B = 8129.047817 C = 9168.206888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.530 6.530 4 N -0.671 5.671 5 C 0.002 3.998 6 C 0.011 3.989 7 C -0.109 4.109 8 C -0.239 4.239 9 C 0.154 3.846 10 N -0.534 5.534 11 C 0.414 3.586 12 N -0.716 5.716 13 C 0.130 3.870 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.523 4.523 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.405 0.595 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.402 0.598 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 8.916 -21.137 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.405 6.405 4 N -0.321 5.321 5 C -0.098 4.098 6 C 0.002 3.998 7 C -0.165 4.165 8 C -0.263 4.263 9 C -0.004 4.004 10 N -0.252 5.252 11 C 0.174 3.826 12 N -0.347 5.347 13 C 0.007 3.993 14 C -0.160 4.160 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.242 0.758 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.238 0.762 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.300 9.159 -20.070 22.307 hybrid contribution -1.584 -0.460 0.076 1.651 sum -4.884 8.699 -19.995 22.345 Atomic orbital electron populations 1.21893 0.91093 1.04955 1.05253 1.21029 0.90594 0.83377 0.75281 1.90742 1.70683 1.31089 1.47974 1.43293 1.04383 1.09223 1.75207 1.17600 0.83378 1.12901 0.95903 1.20066 0.93346 0.92697 0.93708 1.20733 1.00078 1.01564 0.94174 1.21567 0.93955 1.09085 1.01687 1.22437 0.99526 0.90446 0.87944 1.67329 1.03809 1.23430 1.30679 1.18561 0.88536 0.89660 0.85802 1.44884 1.08074 1.60526 1.21207 1.21564 0.95937 0.95996 0.85827 1.21893 0.97467 0.99761 0.96847 1.19010 0.95775 0.95310 0.91110 1.21205 0.93158 1.36424 1.05305 0.92725 1.25026 0.95232 0.96093 0.98089 1.69959 1.14306 1.41744 1.27235 0.86586 0.81586 0.79134 0.80640 1.20662 1.21185 1.19909 0.88417 0.88746 0.90018 0.75838 0.90053 0.91309 0.92015 0.85197 0.82688 0.76187 0.91932 0.92111 0.92986 0.92974 0.96289 0.96263 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.31 36.01 0.37 -0.71 16 2 C 0.51 5.48 6.79 -10.98 -0.07 5.41 16 3 O -0.53 -8.07 15.51 5.54 0.09 -7.99 16 4 N -0.67 -6.77 3.81 -9.61 -0.04 -6.80 16 5 C 0.00 0.02 5.64 -83.27 -0.47 -0.45 16 6 C 0.01 0.14 5.59 -104.18 -0.58 -0.45 16 7 C -0.11 -1.08 8.64 36.00 0.31 -0.77 16 8 C -0.24 -2.77 9.83 -39.45 -0.39 -3.16 16 9 C 0.15 1.98 11.17 -17.54 -0.20 1.78 16 10 N -0.53 -8.54 9.58 -12.26 -0.12 -8.66 16 11 C 0.41 6.37 7.49 -154.73 -1.16 5.21 16 12 N -0.72 -10.89 5.69 -60.25 -0.34 -11.23 16 13 C 0.13 2.32 5.71 -4.04 -0.02 2.30 16 14 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 15 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.41 2.91 8.83 -40.82 -0.36 2.55 16 28 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.40 5.30 7.75 -40.82 -0.32 4.99 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -34.40 339.47 -8.53 -42.93 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.05 Total: 2.57 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.90 Total: -6.32 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.40 -8.53 -42.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.131 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds