Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21297 * 120.00146 * 2 1 4 4 N 1.34781 * 119.99867 * 180.02562 * 2 1 3 5 5 C 1.40156 * 119.99492 * 183.46962 * 4 2 1 6 6 C 1.38864 * 120.51418 * 294.54692 * 5 4 2 7 7 C 1.50693 * 120.77669 * 0.02562 * 6 5 4 8 8 C 1.38807 * 118.44133 * 179.97438 * 6 5 4 9 9 C 1.38035 * 119.39012 * 0.02562 * 8 6 5 10 10 N 1.32021 * 120.98564 * 359.73911 * 9 8 6 11 11 C 1.32286 * 121.69517 * 0.53121 * 10 9 8 12 12 N 1.39181 * 119.74370 * 179.75259 * 11 10 9 13 13 C 1.46493 * 120.00130 * 354.07751 * 12 11 10 14 14 C 1.53001 * 109.47238 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46684 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00450 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99534 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47132 * 89.99893 * 20 18 16 22 22 H 1.48492 * 109.47151 * 209.99670 * 20 18 16 23 23 H 1.48498 * 109.47186 * 330.00323 * 20 18 16 24 24 H 1.09000 * 109.46685 * 269.99701 * 1 2 3 25 25 H 1.08999 * 109.47214 * 30.00198 * 1 2 3 26 26 H 1.08998 * 109.46693 * 150.00019 * 1 2 3 27 27 H 0.96995 * 120.00113 * 3.46174 * 4 2 1 28 28 H 1.08999 * 109.47416 * 96.02154 * 7 6 5 29 29 H 1.09000 * 109.47232 * 216.02267 * 7 6 5 30 30 H 1.09002 * 109.47284 * 336.02115 * 7 6 5 31 31 H 1.07999 * 120.30334 * 179.97438 * 8 6 5 32 32 H 1.08003 * 119.50754 * 180.02562 * 9 8 6 33 33 H 0.97001 * 119.99770 * 174.08080 * 12 11 10 34 34 H 1.08998 * 109.46927 * 60.00050 * 13 12 11 35 35 H 1.09002 * 109.47335 * 300.00202 * 13 12 11 36 36 H 1.09002 * 109.46740 * 300.00098 * 14 13 12 37 37 H 1.08998 * 109.47503 * 59.99934 * 14 13 12 38 38 H 1.08996 * 109.46819 * 299.99657 * 15 14 13 39 39 H 1.09003 * 109.47227 * 60.00003 * 15 14 13 40 40 H 0.96999 * 120.00373 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5805 -1.1683 0.0729 6 6 4.3413 -0.6387 -0.9610 7 6 3.6809 -0.0519 -2.1819 8 6 5.7241 -0.6615 -0.8431 9 6 6.2987 -1.2055 0.2879 10 7 5.5527 -1.6986 1.2592 11 6 4.2318 -1.7026 1.1873 12 7 3.4851 -2.2377 2.2329 13 6 4.1599 -2.9095 3.3462 14 6 3.1175 -3.4023 4.3518 15 6 3.8224 -4.1034 5.5149 16 6 2.7956 -4.5882 6.5057 17 1 1.7454 -4.4141 6.3239 18 6 3.1970 -5.2550 7.6438 19 7 4.4757 -5.4683 7.8645 20 14 1.9242 -5.8566 8.8717 21 1 1.5028 -7.2346 8.5128 22 1 2.5135 -5.8585 10.2347 23 1 0.7445 -4.9552 8.8436 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6973 -2.0065 -0.0516 28 1 3.5959 1.0285 -2.0651 29 1 4.2820 -0.2759 -3.0632 30 1 2.6872 -0.4838 -2.3005 31 1 6.3448 -0.2580 -1.6295 32 1 7.3745 -1.2238 0.3818 33 1 2.5178 -2.1657 2.2245 34 1 4.8361 -2.2094 3.8368 35 1 4.7285 -3.7587 2.9672 36 1 2.5486 -2.5533 4.7309 37 1 2.4416 -4.1025 3.8610 38 1 4.3915 -4.9523 5.1361 39 1 4.4980 -3.4029 6.0057 40 1 4.7581 -5.9377 8.6650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -37.576454 kcal Electronic energy + Delta-G solvation = -20904.363550 eV Core-core repulsion = 17717.408522 eV Total energy + Delta-G solvation = -3186.955028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88313 -40.08878 -37.69300 -36.14831 -35.60068 -34.08814 -32.99614 -31.14297 -29.69649 -28.77054 -27.74620 -24.91475 -24.12040 -22.39144 -22.15549 -21.48493 -18.90681 -18.48135 -18.09490 -17.91503 -17.61659 -16.50971 -16.40057 -16.00151 -15.76472 -15.28577 -15.17657 -14.88014 -14.28130 -14.13541 -13.98629 -13.70019 -13.51189 -13.47923 -13.32851 -13.01634 -12.77372 -12.71044 -12.54961 -12.35155 -11.79445 -11.50616 -11.23373 -11.20023 -11.17375 -10.95510 -10.56231 -10.35263 -9.94388 -8.60613 -8.20244 -6.31955 0.20754 0.48794 1.40815 1.42398 1.53344 1.58106 2.17531 2.22667 2.42095 2.90407 3.13296 3.61430 3.84270 3.88734 4.10138 4.21370 4.23363 4.29345 4.44954 4.55030 4.56386 4.65388 4.66528 4.74579 4.94788 4.96414 5.02135 5.09599 5.13050 5.14712 5.29766 5.45924 5.48981 5.69527 5.71312 5.82736 6.13749 6.23747 6.40479 6.47593 6.84971 7.21781 7.29761 7.37600 8.91874 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.003444 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.395628 B = 8129.047817 C = 9168.206888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.580 6.580 4 N -0.660 5.660 5 C -0.001 4.001 6 C -0.004 4.004 7 C -0.102 4.102 8 C -0.228 4.228 9 C 0.137 3.863 10 N -0.570 5.570 11 C 0.388 3.612 12 N -0.715 5.715 13 C 0.151 3.849 14 C -0.102 4.102 15 C 0.027 3.973 16 C -0.543 4.543 17 H 0.065 0.935 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.261 1.261 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.420 0.580 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.412 0.588 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.066 0.934 38 H -0.006 1.006 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 8.999 -22.562 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.459 6.459 4 N -0.312 5.312 5 C -0.100 4.100 6 C -0.013 4.013 7 C -0.158 4.158 8 C -0.251 4.251 9 C -0.019 4.019 10 N -0.289 5.289 11 C 0.150 3.850 12 N -0.349 5.349 13 C 0.027 3.973 14 C -0.140 4.140 15 C -0.010 4.010 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.197 0.803 33 H 0.249 0.751 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.298 9.233 -21.541 24.027 hybrid contribution -0.883 -0.445 0.426 1.076 sum -6.181 8.788 -21.115 23.691 Atomic orbital electron populations 1.21925 0.87286 1.06759 1.06319 1.21858 0.92286 0.82489 0.73745 1.90722 1.71996 1.32789 1.50359 1.43304 1.03280 1.10075 1.74520 1.17723 0.84952 1.12051 0.95319 1.20502 0.93940 0.92472 0.94378 1.20722 1.00675 1.00534 0.93913 1.21950 0.94153 1.07278 1.01716 1.22923 1.00614 0.90439 0.87916 1.67279 1.04623 1.24621 1.32399 1.18770 0.88758 0.91009 0.86461 1.44540 1.08367 1.61214 1.20751 1.21051 0.94930 0.95195 0.86155 1.21593 0.97455 0.99653 0.95332 1.18903 0.95220 0.94194 0.92731 1.21671 0.94009 1.36389 1.05986 0.91727 1.26022 0.97413 0.96230 1.00366 1.70105 1.16605 1.42656 1.28055 0.85411 0.78900 0.78936 0.77580 1.19637 1.20996 1.18550 0.87511 0.88343 0.86860 0.74044 0.91164 0.88910 0.91474 0.82065 0.80317 0.75089 0.94067 0.93264 0.92401 0.91489 0.98733 0.99170 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.31 71.24 0.73 -0.88 16 2 C 0.51 10.13 6.79 87.66 0.60 10.73 16 3 O -0.58 -17.38 15.51 -3.08 -0.05 -17.43 16 4 N -0.66 -12.30 3.81 -302.68 -1.15 -13.45 16 5 C 0.00 -0.02 5.64 38.31 0.22 0.20 16 6 C 0.00 -0.09 5.59 -19.58 -0.11 -0.20 16 7 C -0.10 -1.82 8.64 71.23 0.62 -1.20 16 8 C -0.23 -4.88 9.83 22.36 0.22 -4.66 16 9 C 0.14 3.44 11.17 84.62 0.95 4.38 16 10 N -0.57 -18.48 9.58 -192.70 -1.85 -20.32 16 11 C 0.39 11.95 7.49 133.17 1.00 12.95 16 12 N -0.72 -21.76 5.69 -344.52 -1.96 -23.72 16 13 C 0.15 5.55 5.71 86.38 0.49 6.05 16 14 C -0.10 -4.10 5.27 30.60 0.16 -3.94 16 15 C 0.03 1.44 4.97 29.85 0.15 1.59 16 16 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 19 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 20 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.42 5.13 8.83 -92.71 -0.82 4.31 16 28 H 0.07 1.46 7.72 -2.39 -0.02 1.44 16 29 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.07 1.11 6.91 -2.39 -0.02 1.09 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.41 10.52 7.75 -92.71 -0.72 9.80 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -76.52 339.47 2.53 -73.99 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.49 Total: 17.04 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.71 Total: -5.07 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.67 Total: -114.50 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.05 Total: -17.43 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -76.52 2.53 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.412 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds