Wall clock time and date at job start Mon Mar 30 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46505 * 109.47112 * 180.02562 * 14 13 12 16 16 C 1.36929 * 119.99660 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00734 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47101 * 90.00315 * 20 18 16 22 22 H 1.48501 * 109.47175 * 210.00334 * 20 18 16 23 23 H 1.48505 * 109.47048 * 330.00421 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 31 31 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 32 32 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 33 33 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 34 34 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 35 35 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 36 36 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 37 37 H 1.09001 * 109.46808 * 300.00038 * 14 13 12 38 38 H 1.09001 * 109.46654 * 60.00382 * 14 13 12 39 39 H 0.97000 * 120.00282 * 359.97438 * 15 14 13 40 40 H 0.97010 * 119.99950 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 6 -0.9764 -6.1358 -4.4763 15 7 -1.6814 -7.4200 -4.4761 16 6 -2.1072 -7.9675 -5.6567 17 1 -1.9231 -7.4528 -6.5882 18 6 -2.7748 -9.1846 -5.6566 19 7 -2.9988 -9.8121 -4.5215 20 14 -3.3564 -9.9312 -7.2671 21 1 -2.2883 -10.7994 -7.8245 22 1 -4.5769 -10.7416 -7.0248 23 1 -3.6662 -8.8460 -8.2324 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1263 -3.2841 0.4244 31 1 0.5731 -2.4305 0.5883 32 1 0.2247 -4.6293 -0.9308 33 1 -0.5222 -3.6433 -3.4695 34 1 1.0314 -4.4962 -3.6344 35 1 0.0298 -6.5201 -2.6109 36 1 -1.5241 -5.6678 -2.4459 37 1 -1.6203 -5.3683 -4.9058 38 1 -0.0662 -6.2206 -5.0701 39 1 -1.8465 -7.8825 -3.6396 40 1 -3.4656 -10.6625 -4.5213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158111637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:03 Heat of formation + Delta-G solvation = -6.960961 kcal Electronic energy + Delta-G solvation = -20135.132074 eV Core-core repulsion = 16949.504633 eV Total energy + Delta-G solvation = -3185.627440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82642 -39.48155 -36.15119 -34.62988 -34.37318 -32.72035 -32.03689 -30.03227 -28.76722 -27.36720 -25.21357 -23.26368 -22.64171 -21.89761 -21.27183 -20.29071 -17.43999 -17.07813 -16.93256 -16.84704 -15.76804 -15.70982 -15.34243 -14.66154 -14.59466 -14.45298 -13.69096 -13.64245 -13.34003 -13.12872 -13.02802 -13.00536 -12.89924 -12.51797 -12.21679 -11.69005 -11.63572 -11.00843 -10.95328 -10.81850 -10.66117 -10.22564 -10.07540 -9.76567 -9.69922 -9.62021 -9.14495 -9.12170 -8.91017 -6.96950 -5.80284 -3.09292 0.89932 0.96792 2.46784 3.04479 3.42029 3.47195 3.48912 3.59718 4.14414 4.25530 4.40239 4.56346 4.65233 4.67120 4.70770 4.98976 5.03002 5.08733 5.16565 5.25527 5.27899 5.37165 5.53140 5.54409 5.57210 5.69000 5.81379 5.92851 6.00710 6.06056 6.14232 6.27510 6.36951 6.47341 6.74418 6.78626 7.35934 7.67406 7.74828 8.07236 8.38661 9.49867 10.06549 10.41239 11.42699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050618 B = 0.002311 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.027479 B =12111.985095 C =12157.857901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.091 3.909 6 C -0.157 4.157 7 C -0.022 4.022 8 C -0.108 4.108 9 C 0.512 3.488 10 O -0.532 6.532 11 N -0.727 5.727 12 C 0.122 3.878 13 C -0.137 4.137 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 18.061 14.834 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 C -0.060 4.060 4 N -0.193 5.193 5 C -0.066 4.066 6 C -0.176 4.176 7 C -0.031 4.031 8 C -0.148 4.148 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.379 5.379 12 C -0.001 4.001 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.873 19.368 13.964 26.236 hybrid contribution -0.926 -1.871 -0.276 2.106 sum 9.947 17.497 13.688 24.340 Atomic orbital electron populations 1.20759 0.90290 1.03622 1.02333 1.20750 0.97526 0.93591 1.00388 1.22619 0.89924 0.97290 0.96145 1.67638 1.08354 1.31490 1.11804 1.22674 1.00286 0.87587 0.96044 1.21998 0.94330 0.99861 1.01445 1.19548 0.93534 0.93733 0.96274 1.20726 1.02563 0.95708 0.95773 1.20333 0.78012 0.81229 0.90675 1.90755 1.53073 1.50895 1.46144 1.46084 1.58813 1.22648 1.10354 1.21371 0.99909 0.96974 0.81867 1.21945 1.00274 0.95100 1.00237 1.20520 0.95188 0.89298 0.92194 1.42335 1.68068 1.20185 1.07228 1.19245 1.29534 1.01774 0.86602 0.91089 1.24762 1.01519 0.97786 0.97022 1.69660 1.47139 1.17260 1.24270 0.86159 0.77997 0.79013 0.82852 1.21665 1.21728 1.20702 0.90753 0.90885 0.91340 0.82879 0.82803 0.84867 0.87454 0.87345 0.76441 0.91339 0.91353 0.91273 0.91263 0.96057 0.96065 0.78301 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.30 36.01 0.33 -0.52 16 2 C -0.12 -1.16 5.90 -104.48 -0.62 -1.78 16 3 C 0.10 0.98 10.86 -17.54 -0.19 0.79 16 4 N -0.48 -5.50 10.36 -13.25 -0.14 -5.64 16 5 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 6 C -0.16 -1.44 9.80 -39.44 -0.39 -1.83 16 7 C -0.02 -0.22 4.41 -104.32 -0.46 -0.68 16 8 C -0.11 -0.82 5.19 -29.04 -0.15 -0.97 16 9 C 0.51 5.77 7.13 -10.99 -0.08 5.69 16 10 O -0.53 -8.39 16.03 5.55 0.09 -8.30 16 11 N -0.73 -7.49 5.56 -60.30 -0.33 -7.83 16 12 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 13 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 14 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 15 N -0.73 -18.49 5.60 -59.90 -0.34 -18.83 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 27 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.11 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.11 0.59 7.12 -51.93 -0.37 0.22 16 32 H 0.40 3.01 8.47 -40.82 -0.35 2.67 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.02 7.67 -40.82 -0.31 9.70 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -35.12 341.21 -8.03 -43.16 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.97 Total: 5.94 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.18 Total: -3.59 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.08 Total: -59.70 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.12 -8.03 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158111637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.194 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds