Wall clock time and date at job start Mon Mar 30 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46505 * 109.47112 * 180.02562 * 14 13 12 16 16 C 1.36929 * 119.99660 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00734 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47101 * 90.00315 * 20 18 16 22 22 H 1.48501 * 109.47175 * 210.00334 * 20 18 16 23 23 H 1.48505 * 109.47048 * 330.00421 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 31 31 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 32 32 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 33 33 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 34 34 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 35 35 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 36 36 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 37 37 H 1.09001 * 109.46808 * 300.00038 * 14 13 12 38 38 H 1.09001 * 109.46654 * 60.00382 * 14 13 12 39 39 H 0.97000 * 120.00282 * 359.97438 * 15 14 13 40 40 H 0.97010 * 119.99950 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 6 -0.9764 -6.1358 -4.4763 15 7 -1.6814 -7.4200 -4.4761 16 6 -2.1072 -7.9675 -5.6567 17 1 -1.9231 -7.4528 -6.5882 18 6 -2.7748 -9.1846 -5.6566 19 7 -2.9988 -9.8121 -4.5215 20 14 -3.3564 -9.9312 -7.2671 21 1 -2.2883 -10.7994 -7.8245 22 1 -4.5769 -10.7416 -7.0248 23 1 -3.6662 -8.8460 -8.2324 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1263 -3.2841 0.4244 31 1 0.5731 -2.4305 0.5883 32 1 0.2247 -4.6293 -0.9308 33 1 -0.5222 -3.6433 -3.4695 34 1 1.0314 -4.4962 -3.6344 35 1 0.0298 -6.5201 -2.6109 36 1 -1.5241 -5.6678 -2.4459 37 1 -1.6203 -5.3683 -4.9058 38 1 -0.0662 -6.2206 -5.0701 39 1 -1.8465 -7.8825 -3.6396 40 1 -3.4656 -10.6625 -4.5213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158111637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:03 Heat of formation + Delta-G solvation = -31.924930 kcal Electronic energy + Delta-G solvation = -20136.214593 eV Core-core repulsion = 16949.504633 eV Total energy + Delta-G solvation = -3186.709959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55784 -40.35879 -37.53926 -35.93339 -35.30484 -33.78603 -33.32942 -31.50248 -29.71240 -28.05101 -26.79844 -24.58955 -23.67591 -22.73680 -22.56490 -21.24680 -19.20492 -18.02487 -17.77420 -17.69707 -16.88932 -16.77112 -16.34399 -15.99118 -15.66731 -15.35605 -15.28817 -14.97221 -14.37269 -14.31010 -14.03219 -13.71956 -13.59935 -13.39085 -13.28375 -12.93148 -12.81393 -12.58571 -12.42879 -12.25754 -12.08116 -12.03933 -11.80197 -11.12407 -10.95497 -10.41353 -10.40110 -10.11129 -9.79783 -9.02865 -7.97633 -5.26666 0.21564 0.26188 1.47559 1.48973 1.57590 1.61603 2.18314 2.55718 2.88322 3.36268 3.49896 3.62468 3.76913 3.81182 3.94692 4.02715 4.07406 4.09290 4.29099 4.43405 4.46371 4.51786 4.56486 4.72561 4.72863 4.76252 4.77514 4.87039 4.92154 5.07418 5.19876 5.28286 5.31310 5.39549 5.42946 5.48078 5.82082 6.25349 6.55540 7.04425 7.24601 7.31884 8.06510 8.30447 9.25767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050618 B = 0.002311 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.027479 B =12111.985095 C =12157.857901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.130 4.130 3 C 0.080 3.920 4 N -0.512 5.512 5 C 0.075 3.925 6 C -0.162 4.162 7 C -0.039 4.039 8 C -0.099 4.099 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.118 4.118 14 C 0.151 3.849 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.271 1.271 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.418 0.582 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 18.035 15.565 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.077 4.077 4 N -0.221 5.221 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.047 4.047 8 C -0.138 4.138 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.369 5.369 12 C 0.009 3.991 13 C -0.156 4.156 14 C 0.024 3.976 15 N -0.390 5.390 16 C -0.382 4.382 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.196 1.196 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.186 0.814 28 H 0.191 0.809 29 H 0.172 0.828 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.208 0.792 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.942 19.357 14.717 26.665 hybrid contribution -0.902 -1.799 -0.503 2.074 sum 10.039 17.558 14.214 24.721 Atomic orbital electron populations 1.20784 0.88966 1.03351 1.03620 1.21038 0.98634 0.93610 0.99935 1.22961 0.89901 0.98393 0.96456 1.67637 1.09145 1.32539 1.12804 1.23090 1.01382 0.87645 0.96032 1.22303 0.94649 1.00489 1.00746 1.19883 0.93986 0.94612 0.96220 1.20770 1.04162 0.95459 0.93383 1.20940 0.76852 0.80442 0.91707 1.90742 1.55054 1.52376 1.47993 1.45914 1.58358 1.22856 1.09723 1.21047 0.99011 0.95636 0.83385 1.21695 1.00874 0.96030 0.96964 1.20687 0.94355 0.86968 0.95581 1.42538 1.68477 1.21841 1.06123 1.19634 1.28865 1.01923 0.87742 0.90824 1.25585 1.02355 0.98519 1.00274 1.69801 1.48261 1.17539 1.26217 0.85131 0.77191 0.78184 0.79198 1.21304 1.21945 1.19565 0.88573 0.90580 0.92160 0.81414 0.80903 0.82785 0.84464 0.84733 0.74471 0.92221 0.92335 0.90624 0.90549 0.96155 0.96199 0.79162 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.30 71.24 0.66 -0.82 16 2 C -0.13 -2.37 5.90 -19.77 -0.12 -2.49 16 3 C 0.08 1.57 10.86 84.68 0.92 2.49 16 4 N -0.51 -11.57 10.36 -195.84 -2.03 -13.60 16 5 C 0.07 1.41 11.18 84.67 0.95 2.35 16 6 C -0.16 -2.76 9.80 22.36 0.22 -2.54 16 7 C -0.04 -0.68 4.41 -19.67 -0.09 -0.76 16 8 C -0.10 -1.21 5.19 29.10 0.15 -1.06 16 9 C 0.51 10.57 7.13 87.65 0.63 11.19 16 10 O -0.58 -17.94 16.03 -3.05 -0.05 -17.99 16 11 N -0.72 -13.11 5.56 -463.07 -2.57 -15.68 16 12 C 0.13 3.28 5.67 86.38 0.49 3.77 16 13 C -0.12 -3.26 5.44 30.59 0.17 -3.09 16 14 C 0.15 5.82 6.26 86.38 0.54 6.36 16 15 N -0.75 -37.44 5.60 -343.44 -1.92 -39.36 16 16 C -0.25 -13.97 9.99 84.04 0.84 -13.13 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 19 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 20 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.06 0.91 6.35 -2.38 -0.02 0.90 16 27 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.14 0.88 8.07 -2.38 -0.02 0.87 16 31 H 0.13 0.97 7.12 -2.39 -0.02 0.95 16 32 H 0.42 4.95 8.47 -92.70 -0.79 4.17 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.38 19.64 7.67 -92.71 -0.71 18.93 16 40 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -75.79 341.21 1.11 -74.68 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.45 Total: 23.76 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.82 Total: -1.53 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.24 Total: -126.77 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.05 Total: -17.99 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.79 1.11 -74.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158111637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.753 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds