Wall clock time and date at job start Mon Mar 30 2020 01:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47041 * 264.99855 * 8 7 6 10 10 O 1.21284 * 120.00174 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99811 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00012 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47355 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47100 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.46860 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00138 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00431 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99891 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00285 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46635 * 59.99764 * 20 18 16 22 22 H 1.48498 * 109.47406 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47227 * 300.00180 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47345 * 25.00235 * 8 7 6 31 31 H 1.09005 * 109.46886 * 144.99972 * 8 7 6 32 32 H 0.97003 * 120.00306 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46849 * 299.99466 * 12 11 9 34 34 H 1.08996 * 109.47658 * 59.99139 * 12 11 9 35 35 H 1.08995 * 109.46841 * 299.99957 * 13 12 11 36 36 H 1.08999 * 109.47009 * 59.99969 * 13 12 11 37 37 H 1.09002 * 109.47199 * 300.00135 * 14 13 12 38 38 H 1.08999 * 109.46845 * 59.99702 * 14 13 12 39 39 H 0.96999 * 120.00512 * 359.97438 * 15 14 13 40 40 H 0.96999 * 120.00039 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 6 1.1399 -2.8912 -1.4150 10 8 1.4491 -2.1614 -2.3331 11 7 0.4824 -4.0417 -1.6608 12 6 0.1416 -4.4111 -3.0369 13 6 -0.5953 -5.7519 -3.0375 14 6 -0.9518 -6.1373 -4.4747 15 7 -1.6579 -7.4208 -4.4752 16 6 -2.0784 -7.9706 -5.6568 17 1 -1.8898 -7.4576 -6.5883 18 6 -2.7480 -9.1865 -5.6572 19 7 -2.9783 -9.8114 -4.5220 20 14 -3.3223 -9.9360 -7.2691 21 1 -2.1506 -10.1711 -8.1507 22 1 -4.0052 -11.2267 -6.9993 23 1 -4.2668 -9.0060 -7.9387 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1324 -3.2788 0.4341 31 1 0.5784 -2.4249 0.5904 32 1 0.2354 -4.6256 -0.9266 33 1 -0.4994 -3.6436 -3.4710 34 1 1.0543 -4.4982 -3.6264 35 1 0.0459 -6.5191 -2.6036 36 1 -1.5080 -5.6651 -2.4480 37 1 -1.5931 -5.3700 -4.9082 38 1 -0.0393 -6.2239 -5.0645 39 1 -1.8270 -7.8818 -3.6386 40 1 -3.4458 -10.6612 -4.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160217647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:13 Heat of formation + Delta-G solvation = -5.864310 kcal Electronic energy + Delta-G solvation = -20138.045638 eV Core-core repulsion = 16952.465752 eV Total energy + Delta-G solvation = -3185.579886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81268 -39.43132 -36.11546 -34.66408 -34.35618 -32.81011 -31.96673 -29.84866 -28.67104 -27.64035 -25.16139 -23.24189 -22.64197 -21.89887 -21.24944 -20.22536 -17.38276 -17.07950 -16.84737 -16.72751 -16.19482 -15.67499 -15.16154 -14.64363 -14.54041 -14.42413 -13.74485 -13.52022 -13.30374 -13.25068 -13.08289 -12.99501 -12.92238 -12.60229 -12.01558 -11.72911 -11.60892 -10.99047 -10.93141 -10.81291 -10.63904 -10.17337 -10.02606 -9.73645 -9.68153 -9.63771 -9.18883 -9.10734 -8.89585 -6.95952 -5.79184 -3.08279 0.85424 1.03191 2.51724 3.07430 3.43390 3.47451 3.48699 3.61664 4.14089 4.33775 4.42569 4.56545 4.57318 4.59772 4.74323 5.01659 5.06455 5.10567 5.15496 5.26715 5.28973 5.33222 5.51915 5.55331 5.59141 5.66611 5.81400 5.95006 6.02662 6.07676 6.15871 6.28965 6.40193 6.46917 6.75829 6.80042 7.40214 7.67797 7.75450 8.11908 8.39857 9.50866 10.07668 10.42337 11.43738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.002317 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.892288 B =12083.808053 C =12132.370082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.175 4.175 4 C 0.098 3.902 5 N -0.490 5.490 6 C 0.115 3.885 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.728 5.728 12 C 0.122 3.878 13 C -0.137 4.137 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 19.840 14.845 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.058 4.058 5 N -0.198 5.198 6 C -0.042 4.042 7 C -0.121 4.121 8 C -0.142 4.142 9 C 0.297 3.703 10 O -0.410 6.410 11 N -0.380 5.380 12 C -0.001 4.001 13 C -0.175 4.175 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.245 20.342 13.982 26.725 hybrid contribution -1.462 -0.955 -0.301 1.772 sum 8.782 19.387 13.681 25.301 Atomic orbital electron populations 1.20896 0.90372 1.03118 1.03380 1.20144 0.96689 0.92483 0.94007 1.21994 0.95637 0.98488 1.03327 1.22719 0.91782 0.96244 0.95099 1.67677 1.41098 0.98454 1.12590 1.22600 0.90830 0.96363 0.94422 1.20145 0.94960 0.94221 1.02751 1.20631 1.02416 0.95687 0.95501 1.20428 0.77872 0.81139 0.90855 1.90739 1.52979 1.51080 1.46247 1.46088 1.58906 1.22736 1.10226 1.21362 0.99923 0.96901 0.81931 1.21944 1.00263 0.95144 1.00200 1.20518 0.95182 0.89280 0.92216 1.42329 1.68078 1.20261 1.07140 1.19200 1.29622 1.01855 0.86539 0.91150 1.24758 1.01490 0.97799 0.97012 1.69648 1.46983 1.17413 1.24307 0.86234 0.78462 0.78379 0.82918 1.21209 1.21653 1.21214 0.90029 0.90980 0.90967 0.84863 0.82871 0.82972 0.87542 0.87528 0.76471 0.91410 0.91377 0.91262 0.91292 0.96090 0.96069 0.78299 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.68 36.00 0.35 -0.54 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 4 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -5.66 10.36 -13.25 -0.14 -5.80 16 6 C 0.11 1.22 10.84 -17.55 -0.19 1.02 16 7 C -0.12 -1.16 4.39 -104.48 -0.46 -1.62 16 8 C -0.10 -0.78 5.39 -29.03 -0.16 -0.94 16 9 C 0.51 5.81 7.82 -10.99 -0.09 5.73 16 10 O -0.53 -8.47 16.03 5.55 0.09 -8.38 16 11 N -0.73 -7.58 5.56 -60.29 -0.33 -7.92 16 12 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 13 C -0.14 -2.02 5.44 -26.73 -0.15 -2.17 16 14 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 15 N -0.73 -18.56 5.60 -59.91 -0.34 -18.90 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.44 6.17 -51.93 -0.32 0.12 16 26 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 27 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 29 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.11 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.11 0.58 6.29 -51.93 -0.33 0.25 16 32 H 0.40 3.06 8.47 -40.82 -0.35 2.71 16 33 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -35.21 341.47 -7.98 -43.19 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.92 Total: 6.09 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.18 Total: -3.37 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.08 Total: -60.08 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.21 -7.98 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160217647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.323 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds