Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47041 * 264.99855 * 8 7 6 10 10 O 1.21284 * 120.00174 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99811 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00012 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47355 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47100 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.46860 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00138 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00431 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99891 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00285 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46635 * 59.99764 * 20 18 16 22 22 H 1.48498 * 109.47406 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47227 * 300.00180 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47345 * 25.00235 * 8 7 6 31 31 H 1.09005 * 109.46886 * 144.99972 * 8 7 6 32 32 H 0.97003 * 120.00306 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46849 * 299.99466 * 12 11 9 34 34 H 1.08996 * 109.47658 * 59.99139 * 12 11 9 35 35 H 1.08995 * 109.46841 * 299.99957 * 13 12 11 36 36 H 1.08999 * 109.47009 * 59.99969 * 13 12 11 37 37 H 1.09002 * 109.47199 * 300.00135 * 14 13 12 38 38 H 1.08999 * 109.46845 * 59.99702 * 14 13 12 39 39 H 0.96999 * 120.00512 * 359.97438 * 15 14 13 40 40 H 0.96999 * 120.00039 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 6 1.1399 -2.8912 -1.4150 10 8 1.4491 -2.1614 -2.3331 11 7 0.4824 -4.0417 -1.6608 12 6 0.1416 -4.4111 -3.0369 13 6 -0.5953 -5.7519 -3.0375 14 6 -0.9518 -6.1373 -4.4747 15 7 -1.6579 -7.4208 -4.4752 16 6 -2.0784 -7.9706 -5.6568 17 1 -1.8898 -7.4576 -6.5883 18 6 -2.7480 -9.1865 -5.6572 19 7 -2.9783 -9.8114 -4.5220 20 14 -3.3223 -9.9360 -7.2691 21 1 -2.1506 -10.1711 -8.1507 22 1 -4.0052 -11.2267 -6.9993 23 1 -4.2668 -9.0060 -7.9387 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1324 -3.2788 0.4341 31 1 0.5784 -2.4249 0.5904 32 1 0.2354 -4.6256 -0.9266 33 1 -0.4994 -3.6436 -3.4710 34 1 1.0543 -4.4982 -3.6264 35 1 0.0459 -6.5191 -2.6036 36 1 -1.5080 -5.6651 -2.4480 37 1 -1.5931 -5.3700 -4.9082 38 1 -0.0393 -6.2239 -5.0645 39 1 -1.8270 -7.8818 -3.6386 40 1 -3.4458 -10.6612 -4.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160217647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = -30.928854 kcal Electronic energy + Delta-G solvation = -20139.132518 eV Core-core repulsion = 16952.465752 eV Total energy + Delta-G solvation = -3186.666766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54364 -40.32214 -37.52429 -35.91100 -35.33314 -33.82583 -33.35998 -31.38582 -29.46182 -28.40262 -26.74530 -24.55807 -23.67133 -22.74711 -22.55903 -21.19095 -19.19369 -17.97519 -17.77142 -17.47077 -17.13784 -16.75831 -16.54182 -15.82577 -15.63160 -15.35864 -15.26494 -14.95100 -14.36631 -14.21890 -14.06173 -13.81993 -13.61458 -13.51484 -13.29440 -12.81589 -12.69470 -12.60794 -12.43321 -12.24831 -12.09956 -12.03406 -11.79960 -11.03715 -10.94330 -10.40080 -10.33270 -10.09023 -9.89493 -9.02622 -7.97150 -5.26373 0.16346 0.33909 1.47515 1.50430 1.56639 1.65103 2.20078 2.56082 2.89645 3.36461 3.50389 3.69777 3.77595 3.83382 3.93591 3.99604 4.03341 4.09488 4.29735 4.46539 4.48240 4.50967 4.59808 4.70707 4.73378 4.75048 4.76128 4.87503 4.92031 5.05220 5.20897 5.28869 5.31712 5.43236 5.44746 5.47974 5.82235 6.25669 6.58535 7.04994 7.27762 7.32136 8.06829 8.30805 9.26027 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.002317 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.892288 B =12083.808053 C =12132.370082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.178 4.178 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.129 4.129 8 C -0.093 4.093 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.117 4.117 14 C 0.151 3.849 15 N -0.747 5.747 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.278 1.278 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.418 0.582 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.815 20.405 15.605 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.048 4.048 3 C -0.198 4.198 4 C -0.072 4.072 5 N -0.230 5.230 6 C -0.062 4.062 7 C -0.132 4.132 8 C -0.133 4.133 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.369 5.369 12 C 0.009 3.991 13 C -0.156 4.156 14 C 0.024 3.976 15 N -0.390 5.390 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.204 1.204 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.176 0.824 28 H 0.192 0.808 29 H 0.181 0.819 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.208 0.792 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.923 20.921 14.763 27.461 hybrid contribution -1.321 -1.043 -0.537 1.767 sum 8.602 19.878 14.226 25.913 Atomic orbital electron populations 1.20923 0.88992 1.04804 1.02796 1.20539 0.97890 0.92716 0.93678 1.22324 0.95518 0.99536 1.02383 1.23166 0.92627 0.96550 0.94871 1.67664 1.42192 0.99360 1.13738 1.22903 0.91645 0.96675 0.94949 1.20379 0.94850 0.95365 1.02574 1.20679 1.04039 0.95437 0.93130 1.21045 0.76700 0.80369 0.91894 1.90725 1.54933 1.52577 1.48086 1.45921 1.58466 1.22933 1.09593 1.21040 0.98986 0.95606 0.83445 1.21695 1.00877 0.96039 0.96943 1.20684 0.94329 0.86984 0.95585 1.42531 1.68495 1.21908 1.06044 1.19601 1.28988 1.02034 0.87694 0.90842 1.25588 1.02290 0.98526 1.00304 1.69794 1.48087 1.17661 1.26260 0.85198 0.78078 0.77279 0.79119 1.20440 1.21894 1.20369 0.91546 0.89589 0.89144 0.82435 0.80769 0.81935 0.84723 0.84707 0.74495 0.92218 0.92467 0.90663 0.90523 0.96140 0.96266 0.79162 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.68 71.24 0.69 -0.82 16 2 C -0.04 -0.70 5.92 -19.67 -0.12 -0.81 16 3 C -0.18 -2.88 9.82 22.36 0.22 -2.66 16 4 C 0.08 1.54 11.18 84.67 0.95 2.48 16 5 N -0.52 -11.96 10.36 -195.84 -2.03 -13.99 16 6 C 0.09 1.96 10.84 84.68 0.92 2.88 16 7 C -0.13 -2.36 4.39 -19.77 -0.09 -2.44 16 8 C -0.09 -1.19 5.39 29.10 0.16 -1.03 16 9 C 0.51 10.80 7.82 87.66 0.69 11.48 16 10 O -0.58 -18.27 16.03 -3.04 -0.05 -18.32 16 11 N -0.72 -13.44 5.56 -463.05 -2.57 -16.02 16 12 C 0.13 3.34 5.67 86.38 0.49 3.83 16 13 C -0.12 -3.30 5.44 30.60 0.17 -3.13 16 14 C 0.15 5.88 6.26 86.38 0.54 6.42 16 15 N -0.75 -37.65 5.60 -343.46 -1.92 -39.57 16 16 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16 20 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 0.81 6.17 -2.39 -0.01 0.79 16 26 H 0.09 0.78 8.10 -2.39 -0.02 0.77 16 27 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.13 0.98 8.06 -2.39 -0.02 0.96 16 31 H 0.14 0.96 6.29 -2.38 -0.02 0.95 16 32 H 0.42 5.12 8.47 -92.71 -0.79 4.34 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.38 19.74 7.67 -92.71 -0.71 19.03 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -76.24 341.47 1.21 -75.03 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.44 Total: 24.09 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.92 Total: -0.89 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.24 Total: -127.86 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.24 1.21 -75.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160217647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.098 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds