Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38627 * 120.75176 * 2 1 4 4 C 1.38563 * 119.35493 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54985 * 180.02562 * 4 3 2 6 6 N 1.31527 * 120.89750 * 359.73896 * 4 3 2 7 7 C 1.32710 * 121.64480 * 0.52789 * 6 4 3 8 8 C 1.48166 * 119.72331 * 179.74918 * 7 6 4 9 9 O 1.21521 * 119.99967 * 179.72774 * 8 7 6 10 10 N 1.34777 * 119.99971 * 359.73305 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46993 * 179.97438 * 13 12 11 15 15 C 1.36940 * 120.00325 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99437 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99945 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99423 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47619 * 59.99892 * 19 17 15 21 21 H 1.48509 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47210 * 299.99500 * 19 17 15 23 23 C 1.38586 * 120.76179 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46909 * 269.96943 * 1 2 3 25 25 H 1.08997 * 109.47779 * 29.97518 * 1 2 3 26 26 H 1.09008 * 109.46939 * 149.97865 * 1 2 3 27 27 H 1.07999 * 120.32785 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46976 * 89.99720 * 5 4 3 29 29 H 1.08997 * 109.46994 * 209.99598 * 5 4 3 30 30 H 1.09004 * 109.47300 * 329.99631 * 5 4 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 33 33 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 34 34 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 35 35 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 36 36 H 1.08992 * 109.47534 * 299.99582 * 13 12 11 37 37 H 1.08996 * 109.47134 * 60.00388 * 13 12 11 38 38 H 0.97010 * 119.99909 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99453 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.46691 * 359.94851 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1914 0.0000 4 6 3.6010 1.1576 -0.0005 5 6 4.3759 2.4500 0.0000 6 7 4.2487 0.0128 0.0041 7 6 3.6083 -1.1495 -0.0010 8 6 4.3808 -2.4139 -0.0011 9 8 3.7995 -3.4810 -0.0007 10 7 5.7281 -2.3804 -0.0014 11 6 6.4919 -3.6306 -0.0010 12 6 7.9888 -3.3137 -0.0022 13 6 8.7864 -4.6193 -0.0011 14 7 10.2196 -4.3159 -0.0029 15 6 11.1352 -5.3343 -0.0028 16 1 10.8005 -6.3611 -0.0010 17 6 12.4932 -5.0467 -0.0039 18 7 12.9009 -3.7953 -0.0056 19 14 13.7419 -6.4360 -0.0031 20 1 13.5515 -7.2736 -1.2144 21 1 15.1141 -5.8681 -0.0040 22 1 13.5530 -7.2707 1.2106 23 6 2.2158 -1.1909 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6935 2.1367 0.0004 28 1 4.5631 2.7609 1.0279 29 1 5.3259 2.3043 -0.5142 30 1 3.7993 3.2197 -0.5131 31 1 6.1921 -1.5285 -0.0020 32 1 6.2432 -4.2080 0.8895 33 1 6.2426 -4.2090 -0.8905 34 1 8.2372 -2.7365 -0.8929 35 1 8.2384 -2.7350 0.8871 36 1 8.5380 -5.1961 0.8897 37 1 8.5369 -5.1983 -0.8902 38 1 10.5202 -3.3935 -0.0049 39 1 13.8498 -3.5945 -0.0068 40 1 1.6960 -2.1376 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161575864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = -7.925644 kcal Electronic energy + Delta-G solvation = -20026.139913 eV Core-core repulsion = 16840.470640 eV Total energy + Delta-G solvation = -3185.669272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95910 -39.17923 -36.03322 -34.72327 -34.20923 -33.12987 -31.84124 -29.54144 -28.41205 -27.86897 -25.84654 -24.12517 -22.38820 -21.61321 -21.14375 -20.31261 -17.90440 -17.03689 -16.82183 -16.26367 -15.78251 -15.66772 -15.03494 -14.73754 -14.36481 -14.16374 -13.79131 -13.74193 -13.25656 -13.22328 -13.00005 -12.94251 -12.64564 -12.56043 -12.25330 -12.04910 -11.61745 -10.93529 -10.88342 -10.78936 -10.57492 -10.40439 -10.07563 -9.90076 -9.78080 -9.65714 -9.34298 -8.98877 -8.84795 -6.90670 -5.74355 -3.03235 0.37245 0.83949 2.57400 3.03297 3.46694 3.50474 3.51906 3.57926 3.79053 4.17240 4.37565 4.60796 4.61714 4.69785 4.92277 5.02815 5.08427 5.17186 5.19629 5.26515 5.31304 5.35008 5.42554 5.60061 5.64433 5.67558 5.73853 5.85959 6.01346 6.10066 6.23052 6.27239 6.35855 6.47039 6.82814 6.87054 7.33646 7.62351 7.72169 8.12915 8.44688 9.55572 10.13101 10.47876 11.48642 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.002531 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.268943 B =11062.066140 C =11812.981295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.155 4.155 4 C 0.131 3.869 5 C -0.105 4.105 6 N -0.463 5.463 7 C 0.092 3.908 8 C 0.567 3.433 9 O -0.536 6.536 10 N -0.705 5.705 11 C 0.120 3.880 12 C -0.138 4.138 13 C 0.157 3.843 14 N -0.734 5.734 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.121 4.121 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.651 13.985 0.036 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.175 4.175 4 C -0.009 4.009 5 C -0.162 4.162 6 N -0.176 5.176 7 C -0.047 4.047 8 C 0.352 3.648 9 O -0.413 6.413 10 N -0.355 5.355 11 C -0.003 4.003 12 C -0.176 4.176 13 C 0.029 3.971 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.142 4.142 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.036 12.997 0.041 28.209 hybrid contribution 0.191 0.004 0.016 0.191 sum -24.846 13.002 0.056 28.042 Atomic orbital electron populations 1.20842 0.89619 1.03646 1.03184 1.20352 0.97146 0.92514 0.95426 1.22067 0.94786 0.98903 1.01751 1.21317 0.91200 0.93794 0.94610 1.20751 1.00566 0.91458 1.03463 1.67391 1.41081 0.97595 1.11560 1.21166 0.91709 0.92056 0.99745 1.17862 0.82522 0.87289 0.77175 1.90787 1.70079 1.30000 1.50452 1.45936 1.05678 1.11124 1.72795 1.21448 0.90961 0.85261 1.02637 1.21948 0.92272 1.00461 1.02924 1.20516 0.85337 0.93083 0.98203 1.42340 0.99117 1.06747 1.89608 1.19205 0.86992 0.88214 1.42703 0.91144 1.24757 0.96989 0.96331 1.03041 1.69653 1.14452 1.16445 1.57792 0.86235 0.80697 0.81188 0.77877 1.21237 1.21686 1.21244 1.22001 0.93803 0.99588 0.98832 0.90238 0.90793 0.90641 0.84355 0.90084 0.89975 0.90540 0.75240 0.91081 0.91081 0.91175 0.91180 0.96025 0.96035 0.78267 0.93467 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.06 36.00 0.36 -0.21 16 2 C -0.05 -0.38 5.91 -104.35 -0.62 -0.99 16 3 C -0.16 -1.16 9.45 -39.32 -0.37 -1.53 16 4 C 0.13 1.19 6.78 -82.60 -0.56 0.63 16 5 C -0.11 -0.66 10.17 36.00 0.37 -0.29 16 6 N -0.46 -5.41 9.45 -6.06 -0.06 -5.47 16 7 C 0.09 1.15 6.75 -83.01 -0.56 0.59 16 8 C 0.57 8.31 7.81 -12.18 -0.10 8.21 16 9 O -0.54 -9.20 16.32 5.35 0.09 -9.12 16 10 N -0.70 -9.68 5.55 -61.14 -0.34 -10.02 16 11 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 12 C -0.14 -2.23 5.44 -26.73 -0.15 -2.38 16 13 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 14 N -0.73 -19.10 5.60 -59.92 -0.34 -19.43 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C -0.12 -1.28 9.34 -39.05 -0.36 -1.65 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 26 H 0.07 0.34 8.10 -51.92 -0.42 -0.08 16 27 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.41 5.15 7.80 -40.82 -0.32 4.83 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.15 1.50 7.64 -52.49 -0.40 1.10 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -33.97 344.86 -8.09 -42.06 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.07 Total: 7.28 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.28 Total: -0.27 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.01 Total: -62.89 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.97 -8.09 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161575864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.136 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds