Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38627 * 120.75176 * 2 1 4 4 C 1.38563 * 119.35493 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54985 * 180.02562 * 4 3 2 6 6 N 1.31527 * 120.89750 * 359.73896 * 4 3 2 7 7 C 1.32710 * 121.64480 * 0.52789 * 6 4 3 8 8 C 1.48166 * 119.72331 * 179.74918 * 7 6 4 9 9 O 1.21521 * 119.99967 * 179.72774 * 8 7 6 10 10 N 1.34777 * 119.99971 * 359.73305 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46993 * 179.97438 * 13 12 11 15 15 C 1.36940 * 120.00325 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99437 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99945 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99423 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47619 * 59.99892 * 19 17 15 21 21 H 1.48509 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47210 * 299.99500 * 19 17 15 23 23 C 1.38586 * 120.76179 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46909 * 269.96943 * 1 2 3 25 25 H 1.08997 * 109.47779 * 29.97518 * 1 2 3 26 26 H 1.09008 * 109.46939 * 149.97865 * 1 2 3 27 27 H 1.07999 * 120.32785 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46976 * 89.99720 * 5 4 3 29 29 H 1.08997 * 109.46994 * 209.99598 * 5 4 3 30 30 H 1.09004 * 109.47300 * 329.99631 * 5 4 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 33 33 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 34 34 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 35 35 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 36 36 H 1.08992 * 109.47534 * 299.99582 * 13 12 11 37 37 H 1.08996 * 109.47134 * 60.00388 * 13 12 11 38 38 H 0.97010 * 119.99909 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99453 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.46691 * 359.94851 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1914 0.0000 4 6 3.6010 1.1576 -0.0005 5 6 4.3759 2.4500 0.0000 6 7 4.2487 0.0128 0.0041 7 6 3.6083 -1.1495 -0.0010 8 6 4.3808 -2.4139 -0.0011 9 8 3.7995 -3.4810 -0.0007 10 7 5.7281 -2.3804 -0.0014 11 6 6.4919 -3.6306 -0.0010 12 6 7.9888 -3.3137 -0.0022 13 6 8.7864 -4.6193 -0.0011 14 7 10.2196 -4.3159 -0.0029 15 6 11.1352 -5.3343 -0.0028 16 1 10.8005 -6.3611 -0.0010 17 6 12.4932 -5.0467 -0.0039 18 7 12.9009 -3.7953 -0.0056 19 14 13.7419 -6.4360 -0.0031 20 1 13.5515 -7.2736 -1.2144 21 1 15.1141 -5.8681 -0.0040 22 1 13.5530 -7.2707 1.2106 23 6 2.2158 -1.1909 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6935 2.1367 0.0004 28 1 4.5631 2.7609 1.0279 29 1 5.3259 2.3043 -0.5142 30 1 3.7993 3.2197 -0.5131 31 1 6.1921 -1.5285 -0.0020 32 1 6.2432 -4.2080 0.8895 33 1 6.2426 -4.2090 -0.8905 34 1 8.2372 -2.7365 -0.8929 35 1 8.2384 -2.7350 0.8871 36 1 8.5380 -5.1961 0.8897 37 1 8.5369 -5.1983 -0.8902 38 1 10.5202 -3.3935 -0.0049 39 1 13.8498 -3.5945 -0.0068 40 1 1.6960 -2.1376 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161575864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = -31.628391 kcal Electronic energy + Delta-G solvation = -20027.167741 eV Core-core repulsion = 16840.470640 eV Total energy + Delta-G solvation = -3186.697100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77922 -40.22247 -37.56354 -36.02778 -35.18543 -34.02658 -33.51025 -31.26193 -29.03462 -28.38751 -27.32327 -25.52620 -23.97379 -22.62157 -22.25157 -21.40273 -19.28254 -18.66005 -17.77567 -16.99718 -16.96945 -16.82673 -16.47880 -16.02978 -15.54035 -15.28866 -15.21549 -14.88380 -14.52429 -14.13505 -13.93032 -13.76348 -13.41924 -13.32056 -13.09065 -13.04144 -12.78774 -12.64110 -12.60248 -12.47157 -12.11648 -12.09257 -11.81461 -11.45522 -10.94397 -10.60483 -10.53113 -10.28476 -9.95992 -9.03077 -7.96708 -5.26446 -0.41736 0.16415 1.47229 1.50877 1.56956 1.60808 1.96781 2.55900 2.75517 2.99826 3.36745 3.61526 3.66067 3.72145 3.97813 4.02035 4.03984 4.25239 4.32213 4.44390 4.50058 4.62696 4.67427 4.69197 4.73225 4.78211 4.83114 4.83582 4.99027 5.12913 5.22010 5.26556 5.27330 5.28541 5.32671 5.47899 5.65689 6.25394 6.32153 6.77218 7.03841 7.31774 8.06161 8.30267 9.26730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.002531 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.268943 B =11062.066140 C =11812.981295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.142 4.142 4 C 0.117 3.883 5 C -0.103 4.103 6 N -0.485 5.485 7 C 0.063 3.937 8 C 0.565 3.435 9 O -0.570 6.570 10 N -0.700 5.700 11 C 0.131 3.869 12 C -0.119 4.119 13 C 0.154 3.846 14 N -0.748 5.748 15 C -0.251 4.251 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.277 1.277 23 C -0.132 4.132 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.417 0.583 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.250 15.230 0.037 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.023 4.023 5 C -0.160 4.160 6 N -0.198 5.198 7 C -0.074 4.074 8 C 0.351 3.649 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.007 3.993 12 C -0.157 4.157 13 C 0.027 3.973 14 N -0.391 5.391 15 C -0.383 4.383 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.153 4.153 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.195 0.805 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.255 0.745 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.207 0.793 39 H 0.061 0.939 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.666 14.235 0.042 30.227 hybrid contribution 0.575 -0.301 0.017 0.650 sum -26.090 13.934 0.059 29.578 Atomic orbital electron populations 1.20929 0.87115 1.04811 1.04215 1.20742 0.98850 0.91694 0.94060 1.22504 0.94182 1.00242 0.99256 1.21921 0.92535 0.93835 0.94054 1.20842 1.00210 0.90688 1.04243 1.67333 1.41898 0.98057 1.12547 1.20903 0.92244 0.91540 1.02697 1.18262 0.82542 0.87919 0.76196 1.90750 1.70650 1.31422 1.52145 1.45844 1.05655 1.10975 1.72581 1.21228 0.89898 0.85704 1.02475 1.21702 0.92569 0.98249 1.03162 1.20661 0.83180 0.95308 0.98168 1.42551 1.01035 1.05883 1.89601 1.19625 0.87870 0.89089 1.41697 0.90614 1.25629 0.98991 0.98803 1.03465 1.69810 1.14494 1.18428 1.59241 0.85158 0.77748 0.78276 0.78249 1.20307 1.21928 1.20322 1.22109 0.93226 1.00694 0.99283 0.89102 0.88617 0.90547 0.80544 0.89233 0.91015 0.87791 0.74530 0.91288 0.91291 0.90937 0.90943 0.95761 0.95775 0.79286 0.93865 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.06 71.23 0.72 -0.07 16 2 C -0.05 -0.64 5.91 -19.69 -0.12 -0.76 16 3 C -0.14 -1.70 9.45 22.44 0.21 -1.49 16 4 C 0.12 1.93 6.78 42.68 0.29 2.22 16 5 C -0.10 -1.05 10.17 71.23 0.72 -0.33 16 6 N -0.48 -11.17 9.45 -173.09 -1.64 -12.81 16 7 C 0.06 1.61 6.75 41.91 0.28 1.89 16 8 C 0.56 17.05 7.81 86.88 0.68 17.73 16 9 O -0.57 -20.28 16.32 -3.78 -0.06 -20.34 16 10 N -0.70 -19.54 5.55 -465.63 -2.58 -22.13 16 11 C 0.13 3.85 5.67 86.38 0.49 4.34 16 12 C -0.12 -3.83 5.44 30.59 0.17 -3.66 16 13 C 0.15 6.30 6.26 86.38 0.54 6.84 16 14 N -0.75 -39.19 5.60 -343.47 -1.92 -41.12 16 15 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 18 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 19 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 C -0.13 -2.77 9.34 22.61 0.21 -2.56 16 24 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.10 0.28 8.10 -2.39 -0.02 0.26 16 26 H 0.08 0.54 8.10 -2.38 -0.02 0.52 16 27 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.48 8.08 -2.38 -0.02 0.46 16 31 H 0.42 10.59 7.80 -92.71 -0.72 9.87 16 32 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.38 20.62 7.67 -92.70 -0.71 19.91 16 39 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.14 3.00 7.64 -2.91 -0.02 2.98 16 Total: -1.00 -73.64 344.86 1.22 -72.42 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.39 Total: 28.47 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.50 Total: 6.53 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -5.86 Total: -135.92 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.64 1.22 -72.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161575864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.790 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds