Wall clock time and date at job start Mon Mar 30 2020 02:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38143 * 120.49906 * 2 1 4 4 N 1.31813 * 120.89645 * 180.29134 * 3 2 1 5 5 C 1.31819 * 122.04846 * 359.73920 * 4 3 2 6 6 C 1.38145 * 120.89457 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.49797 * 180.02562 * 6 5 4 8 8 C 1.39812 * 119.00202 * 0.02562 * 6 5 4 9 9 C 1.48156 * 120.92142 * 179.97438 * 8 6 5 10 10 O 1.21517 * 119.99421 * 90.00011 * 9 8 6 11 11 N 1.34771 * 120.00119 * 270.00072 * 9 8 6 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47320 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47099 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47233 * 180.02562 * 14 13 12 16 16 C 1.36934 * 120.00132 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99856 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00205 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46886 * 89.99666 * 20 18 16 22 22 H 1.48492 * 109.47645 * 209.99778 * 20 18 16 23 23 H 1.48505 * 109.47131 * 330.00463 * 20 18 16 24 24 H 1.08998 * 109.47078 * 270.22067 * 1 2 3 25 25 H 1.09000 * 109.46915 * 30.22526 * 1 2 3 26 26 H 1.09002 * 109.46844 * 150.22515 * 1 2 3 27 27 H 1.07998 * 119.55534 * 0.02684 * 3 2 1 28 28 H 1.07999 * 119.54821 * 180.02562 * 5 4 3 29 29 H 1.09006 * 109.47088 * 269.98098 * 7 6 5 30 30 H 1.09000 * 109.47383 * 29.97602 * 7 6 5 31 31 H 1.08995 * 109.47091 * 149.98257 * 7 6 5 32 32 H 0.96995 * 120.00304 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46578 * 299.99945 * 12 11 9 34 34 H 1.08999 * 109.46905 * 59.99328 * 12 11 9 35 35 H 1.09004 * 109.46895 * 299.99925 * 13 12 11 36 36 H 1.08997 * 109.47106 * 59.99439 * 13 12 11 37 37 H 1.09001 * 109.46761 * 299.99785 * 14 13 12 38 38 H 1.08997 * 109.47528 * 59.99785 * 14 13 12 39 39 H 0.97007 * 119.99641 * 359.97438 * 15 14 13 40 40 H 0.96996 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5262 1.1994 -0.0058 5 6 4.2334 0.0870 -0.0066 6 6 3.6136 -1.1476 -0.0010 7 6 4.4309 -2.4137 -0.0015 8 6 2.2167 -1.2047 0.0052 9 6 1.5080 -2.5058 0.0108 10 8 1.2220 -3.0371 1.0656 11 7 1.1806 -3.0998 -1.1537 12 6 0.4792 -4.3861 -1.1481 13 6 0.2297 -4.8372 -2.5886 14 6 -0.5021 -6.1808 -2.5828 15 7 -0.7406 -6.6131 -3.9621 16 6 -1.3859 -7.7957 -4.2071 17 1 -1.7187 -8.4100 -3.3836 18 6 -1.6122 -8.2050 -5.5141 19 7 -1.2071 -7.4561 -6.5178 20 14 -2.4919 -9.8186 -5.8484 21 1 -3.9546 -9.5766 -5.9337 22 1 -2.0090 -10.3892 -7.1315 23 1 -2.2116 -10.7730 -4.7457 24 1 -0.3633 0.0040 1.0276 25 1 -0.3633 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6690 2.1261 0.0004 28 1 5.3120 0.1416 -0.0110 29 1 4.6232 -2.7216 -1.0293 30 1 5.3781 -2.2350 0.5075 31 1 3.8826 -3.2002 0.5169 32 1 1.4085 -2.6755 -1.9956 33 1 1.0889 -5.1300 -0.6353 34 1 -0.4739 -4.2780 -0.6305 35 1 -0.3797 -4.0933 -3.1019 36 1 1.1830 -4.9454 -3.1058 37 1 0.1077 -6.9244 -2.0696 38 1 -1.4555 -6.0731 -2.0654 39 1 -0.4419 -6.0611 -4.7018 40 1 -1.3656 -7.7420 -7.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162479118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:00 Heat of formation + Delta-G solvation = -7.634727 kcal Electronic energy + Delta-G solvation = -20514.249698 eV Core-core repulsion = 17328.593041 eV Total energy + Delta-G solvation = -3185.656657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09545 -39.27580 -36.13245 -34.45022 -34.09294 -33.91559 -31.97223 -29.70315 -28.15746 -27.60368 -25.68301 -24.11948 -22.52939 -21.63483 -21.31800 -20.60758 -18.22137 -17.37388 -17.01059 -16.36008 -15.55511 -15.53217 -14.83320 -14.79102 -14.55183 -14.17573 -13.79460 -13.62724 -13.59550 -13.31990 -13.05929 -12.89749 -12.79731 -12.68018 -12.43072 -11.79621 -11.74305 -11.04952 -10.96642 -10.87076 -10.67845 -10.49541 -10.09567 -9.92402 -9.75652 -9.64396 -9.23502 -9.15320 -8.91444 -6.97412 -5.80516 -3.09738 0.65714 0.69971 2.29750 2.91606 3.34479 3.41764 3.46978 3.48670 4.03778 4.31297 4.35360 4.37059 4.55847 4.60122 4.81508 5.01979 5.02352 5.21715 5.22829 5.25443 5.26682 5.30295 5.53835 5.54048 5.57950 5.70870 5.74744 5.81864 5.88461 5.97768 6.12247 6.25816 6.26487 6.29022 6.72865 6.77074 7.25048 7.57699 7.66997 7.92384 8.38345 9.49552 10.06076 10.40640 11.42450 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.002729 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.162670 B =10257.139160 C =10350.114045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C 0.092 3.908 4 N -0.469 5.469 5 C 0.092 3.908 6 C -0.098 4.098 7 C -0.120 4.120 8 C -0.084 4.084 9 C 0.564 3.436 10 O -0.527 6.527 11 N -0.717 5.717 12 C 0.121 3.879 13 C -0.138 4.138 14 C 0.157 3.843 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.403 0.597 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 17.311 12.710 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.101 4.101 3 C -0.065 4.065 4 N -0.177 5.177 5 C -0.065 4.065 6 C -0.100 4.100 7 C -0.177 4.177 8 C -0.096 4.096 9 C 0.349 3.651 10 O -0.404 6.404 11 N -0.368 5.368 12 C -0.002 4.002 13 C -0.176 4.176 14 C 0.029 3.971 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.178 0.822 28 H 0.178 0.822 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.620 17.531 13.489 24.121 hybrid contribution -0.712 -1.277 -0.928 1.731 sum 8.908 16.254 12.561 22.390 Atomic orbital electron populations 1.20835 0.89539 1.03722 1.03444 1.20994 0.97771 0.92630 0.98662 1.22625 0.89779 0.97223 0.96910 1.67543 1.08264 1.31496 1.10365 1.22632 1.00407 0.86600 0.96911 1.20990 0.92636 0.97764 0.98638 1.20848 0.99653 0.93849 1.03345 1.20174 0.93728 0.93759 1.01894 1.18119 0.78599 0.84013 0.84370 1.90829 1.53848 1.64719 1.30957 1.46123 1.59106 1.23330 1.08197 1.21450 0.96995 0.83409 0.98387 1.21952 1.01862 0.99510 0.94277 1.20512 0.96233 0.91475 0.88923 1.42335 1.70223 1.24291 1.00964 1.19238 1.29140 0.96954 0.91874 0.91082 1.24758 1.01743 0.98984 0.95535 1.69659 1.51995 1.38499 0.98142 0.86165 0.79333 0.83224 0.77331 1.21661 1.21724 1.20700 0.90093 0.90300 0.91033 0.82194 0.82196 0.90045 0.90361 0.90853 0.76246 0.91039 0.91043 0.91204 0.91195 0.96023 0.96030 0.78291 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.67 36.01 0.35 -0.61 16 2 C -0.10 -0.95 5.93 -104.06 -0.62 -1.56 16 3 C 0.09 0.83 10.86 -17.59 -0.19 0.64 16 4 N -0.47 -4.81 10.34 -13.31 -0.14 -4.95 16 5 C 0.09 0.83 10.86 -17.59 -0.19 0.64 16 6 C -0.10 -0.94 5.93 -104.07 -0.62 -1.56 16 7 C -0.12 -0.97 9.67 36.01 0.35 -0.62 16 8 C -0.08 -0.92 5.67 -104.64 -0.59 -1.52 16 9 C 0.56 7.10 4.51 -12.19 -0.05 7.05 16 10 O -0.53 -8.59 17.10 5.35 0.09 -8.50 16 11 N -0.72 -7.99 5.55 -61.15 -0.34 -8.33 16 12 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 13 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 14 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 15 N -0.73 -18.39 5.60 -59.91 -0.34 -18.73 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.07 0.65 7.17 -51.93 -0.37 0.28 16 27 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.07 0.73 7.17 -51.93 -0.37 0.35 16 32 H 0.40 3.72 8.46 -40.82 -0.35 3.38 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.00 7.67 -40.82 -0.31 9.69 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -33.68 342.57 -7.88 -41.56 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.02 Total: 6.40 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.01 Total: -2.55 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.09 Total: -59.36 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.68 -7.88 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162479118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.929 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds