Wall clock time and date at job start Mon Mar 30 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38143 * 120.49906 * 2 1 4 4 N 1.31813 * 120.89645 * 180.29134 * 3 2 1 5 5 C 1.31819 * 122.04846 * 359.73920 * 4 3 2 6 6 C 1.38145 * 120.89457 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.49797 * 180.02562 * 6 5 4 8 8 C 1.39812 * 119.00202 * 0.02562 * 6 5 4 9 9 C 1.48156 * 120.92142 * 179.97438 * 8 6 5 10 10 O 1.21517 * 119.99421 * 90.00011 * 9 8 6 11 11 N 1.34771 * 120.00119 * 270.00072 * 9 8 6 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47320 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47099 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47233 * 180.02562 * 14 13 12 16 16 C 1.36934 * 120.00132 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99856 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00205 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46886 * 89.99666 * 20 18 16 22 22 H 1.48492 * 109.47645 * 209.99778 * 20 18 16 23 23 H 1.48505 * 109.47131 * 330.00463 * 20 18 16 24 24 H 1.08998 * 109.47078 * 270.22067 * 1 2 3 25 25 H 1.09000 * 109.46915 * 30.22526 * 1 2 3 26 26 H 1.09002 * 109.46844 * 150.22515 * 1 2 3 27 27 H 1.07998 * 119.55534 * 0.02684 * 3 2 1 28 28 H 1.07999 * 119.54821 * 180.02562 * 5 4 3 29 29 H 1.09006 * 109.47088 * 269.98098 * 7 6 5 30 30 H 1.09000 * 109.47383 * 29.97602 * 7 6 5 31 31 H 1.08995 * 109.47091 * 149.98257 * 7 6 5 32 32 H 0.96995 * 120.00304 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46578 * 299.99945 * 12 11 9 34 34 H 1.08999 * 109.46905 * 59.99328 * 12 11 9 35 35 H 1.09004 * 109.46895 * 299.99925 * 13 12 11 36 36 H 1.08997 * 109.47106 * 59.99439 * 13 12 11 37 37 H 1.09001 * 109.46761 * 299.99785 * 14 13 12 38 38 H 1.08997 * 109.47528 * 59.99785 * 14 13 12 39 39 H 0.97007 * 119.99641 * 359.97438 * 15 14 13 40 40 H 0.96996 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5262 1.1994 -0.0058 5 6 4.2334 0.0870 -0.0066 6 6 3.6136 -1.1476 -0.0010 7 6 4.4309 -2.4137 -0.0015 8 6 2.2167 -1.2047 0.0052 9 6 1.5080 -2.5058 0.0108 10 8 1.2220 -3.0371 1.0656 11 7 1.1806 -3.0998 -1.1537 12 6 0.4792 -4.3861 -1.1481 13 6 0.2297 -4.8372 -2.5886 14 6 -0.5021 -6.1808 -2.5828 15 7 -0.7406 -6.6131 -3.9621 16 6 -1.3859 -7.7957 -4.2071 17 1 -1.7187 -8.4100 -3.3836 18 6 -1.6122 -8.2050 -5.5141 19 7 -1.2071 -7.4561 -6.5178 20 14 -2.4919 -9.8186 -5.8484 21 1 -3.9546 -9.5766 -5.9337 22 1 -2.0090 -10.3892 -7.1315 23 1 -2.2116 -10.7730 -4.7457 24 1 -0.3633 0.0040 1.0276 25 1 -0.3633 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6690 2.1261 0.0004 28 1 5.3120 0.1416 -0.0110 29 1 4.6232 -2.7216 -1.0293 30 1 5.3781 -2.2350 0.5075 31 1 3.8826 -3.2002 0.5169 32 1 1.4085 -2.6755 -1.9956 33 1 1.0889 -5.1300 -0.6353 34 1 -0.4739 -4.2780 -0.6305 35 1 -0.3797 -4.0933 -3.1019 36 1 1.1830 -4.9454 -3.1058 37 1 0.1077 -6.9244 -2.0696 38 1 -1.4555 -6.0731 -2.0654 39 1 -0.4419 -6.0611 -4.7018 40 1 -1.3656 -7.7420 -7.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162479118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:59 Heat of formation + Delta-G solvation = -31.230198 kcal Electronic energy + Delta-G solvation = -20515.272874 eV Core-core repulsion = 17328.593041 eV Total energy + Delta-G solvation = -3186.679834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89997 -40.21508 -37.55694 -35.97505 -34.76427 -34.74722 -33.68143 -31.32315 -28.94926 -28.25459 -27.13011 -25.36768 -24.02922 -22.62917 -22.31139 -21.65526 -19.38264 -18.80923 -18.13490 -17.45418 -16.70801 -16.67901 -16.23063 -15.51772 -15.50167 -15.33265 -15.27953 -15.09145 -14.53250 -14.26835 -14.22035 -13.88124 -13.51531 -13.44621 -13.33109 -13.24839 -12.82871 -12.64017 -12.46947 -12.46127 -12.10247 -12.07751 -11.82784 -11.50535 -10.95322 -10.68364 -10.45478 -10.27554 -9.82214 -9.02749 -7.97370 -5.26569 -0.10607 0.01932 1.31229 1.47742 1.49135 1.57745 1.95342 2.55541 2.63930 3.36735 3.38291 3.50660 3.67540 3.69812 3.72208 3.91911 4.05334 4.17303 4.25363 4.36398 4.41381 4.53810 4.62291 4.65339 4.68781 4.69653 4.72951 4.83923 4.97716 5.05889 5.12225 5.13142 5.20102 5.29394 5.31031 5.48421 5.60579 6.25212 6.30967 6.88599 6.96335 7.31993 8.06585 8.30039 9.26135 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.002729 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.162670 B =10257.139160 C =10350.114045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.103 4.103 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.090 3.910 6 C -0.103 4.103 7 C -0.117 4.117 8 C -0.105 4.105 9 C 0.571 3.429 10 O -0.569 6.569 11 N -0.705 5.705 12 C 0.132 3.868 13 C -0.118 4.118 14 C 0.152 3.848 15 N -0.747 5.747 16 C -0.249 4.249 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.270 1.270 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.187 0.813 28 H 0.187 0.813 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.376 0.624 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 18.101 13.058 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.105 4.105 3 C -0.067 4.067 4 N -0.194 5.194 5 C -0.067 4.067 6 C -0.105 4.105 7 C -0.174 4.174 8 C -0.116 4.116 9 C 0.357 3.643 10 O -0.449 6.449 11 N -0.356 5.356 12 C 0.008 3.992 13 C -0.157 4.157 14 C 0.025 3.975 15 N -0.390 5.390 16 C -0.381 4.381 17 H 0.093 0.907 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.195 1.195 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.204 0.796 28 H 0.204 0.796 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.208 0.792 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.085 18.335 13.854 25.097 hybrid contribution -0.828 -1.474 -0.978 1.953 sum 9.257 16.861 12.877 23.147 Atomic orbital electron populations 1.20866 0.88672 1.04321 1.03539 1.21186 0.98500 0.92424 0.98432 1.23044 0.89642 0.97983 0.96013 1.67607 1.08885 1.32053 1.10841 1.23048 1.01635 0.85985 0.96017 1.21185 0.92250 0.98682 0.98394 1.20867 1.00080 0.92505 1.03975 1.20189 0.94484 0.93163 1.03743 1.18341 0.77838 0.84312 0.83760 1.90803 1.55673 1.65981 1.32397 1.45960 1.58381 1.22626 1.08607 1.21198 0.96993 0.84069 0.96909 1.21702 1.01476 0.97028 0.95454 1.20673 0.96822 0.93846 0.86112 1.42545 1.69968 1.23604 1.02914 1.19639 1.28506 0.97840 0.92114 0.90690 1.25580 1.03185 1.02445 0.95483 1.69804 1.53630 1.40240 0.98237 0.85135 0.78029 0.79485 0.77083 1.21309 1.22023 1.19485 0.90228 0.87802 0.92291 0.79625 0.79621 0.89003 0.88198 0.93040 0.74903 0.91404 0.91400 0.90717 0.90698 0.95901 0.95896 0.79238 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.67 71.24 0.69 -1.05 16 2 C -0.10 -1.86 5.93 -19.50 -0.12 -1.97 16 3 C 0.09 1.46 10.86 84.67 0.92 2.38 16 4 N -0.49 -9.05 10.34 -196.01 -2.03 -11.07 16 5 C 0.09 1.46 10.86 84.67 0.92 2.37 16 6 C -0.10 -1.85 5.93 -19.51 -0.12 -1.96 16 7 C -0.12 -1.74 9.67 71.24 0.69 -1.05 16 8 C -0.10 -2.21 5.67 -19.88 -0.11 -2.32 16 9 C 0.57 14.22 4.51 86.88 0.39 14.62 16 10 O -0.57 -18.76 17.10 -3.77 -0.06 -18.82 16 11 N -0.70 -15.17 5.55 -465.67 -2.59 -17.75 16 12 C 0.13 3.28 5.67 86.38 0.49 3.77 16 13 C -0.12 -3.33 5.44 30.59 0.17 -3.16 16 14 C 0.15 5.82 6.26 86.38 0.54 6.36 16 15 N -0.75 -37.39 5.60 -343.47 -1.92 -39.31 16 16 C -0.25 -13.88 9.99 84.03 0.84 -13.05 16 17 H 0.08 4.02 7.83 -2.92 -0.02 4.00 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 20 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.06 1.02 7.17 -2.39 -0.02 1.01 16 27 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.05 1.00 7.17 -2.39 -0.02 0.99 16 32 H 0.41 7.14 8.46 -92.71 -0.78 6.35 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.38 19.69 7.67 -92.70 -0.71 18.98 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -71.76 342.57 1.04 -70.73 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.44 Total: 25.63 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.77 Total: 1.14 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -6.25 Total: -126.46 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.76 1.04 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162479118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.496 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds