Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38626 * 120.32624 * 2 1 4 4 C 1.38597 * 118.48665 * 179.72555 * 3 2 1 5 5 C 1.39306 * 119.05909 * 0.49373 * 4 3 2 6 6 C 1.48169 * 119.72240 * 179.77364 * 5 4 3 7 7 O 1.21513 * 119.99903 * 359.72452 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.72159 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99838 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00037 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99973 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46933 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46921 * 120.00143 * 17 15 13 20 20 H 1.48498 * 109.46946 * 240.00460 * 17 15 13 21 21 N 1.32724 * 120.55333 * 359.49344 * 5 4 3 22 22 C 1.31523 * 121.64359 * 0.25842 * 21 5 4 23 23 C 1.50700 * 119.54722 * 179.97438 * 22 21 5 24 24 H 1.08997 * 109.47290 * 270.02353 * 1 2 3 25 25 H 1.09004 * 109.46815 * 30.02548 * 1 2 3 26 26 H 1.09002 * 109.47442 * 150.02267 * 1 2 3 27 27 H 1.07999 * 120.75496 * 359.97376 * 3 2 1 28 28 H 1.08001 * 120.46767 * 180.26260 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 35 35 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 36 36 H 0.96992 * 119.99973 * 359.97438 * 12 11 10 37 37 H 0.97003 * 120.00466 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.47041 * 90.00174 * 23 22 21 39 39 H 1.08996 * 109.46939 * 209.99692 * 23 22 21 40 40 H 1.08998 * 109.47174 * 329.99636 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0058 5 6 4.2294 -0.0867 0.0010 6 6 5.7096 -0.1513 0.0020 7 8 6.3625 0.8735 0.0020 8 7 6.3319 -1.3469 0.0030 9 6 7.7955 -1.4108 -0.0021 10 6 8.2421 -2.8742 -0.0068 11 6 9.7706 -2.9409 -0.0127 12 7 10.1981 -4.3422 -0.0178 13 6 11.5322 -4.6509 -0.0231 14 1 12.2692 -3.8614 -0.0231 15 6 11.9374 -5.9786 -0.0274 16 7 11.0393 -6.9407 -0.0269 17 14 13.7573 -6.3998 -0.0353 18 1 14.5552 -5.1474 -0.0353 19 1 14.0864 -7.1959 1.1743 20 1 14.0770 -7.1908 -1.2508 21 7 3.5216 -1.2095 0.0010 22 6 2.2064 -1.1961 0.0005 23 6 1.4500 -2.4995 0.0000 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6846 2.1419 -0.0004 28 1 4.1693 2.0649 0.0103 29 1 5.8107 -2.1650 0.0027 30 1 8.1780 -0.9114 -0.8924 31 1 8.1839 -0.9153 0.8876 32 1 7.8596 -3.3735 0.8834 33 1 7.8537 -3.3698 -0.8966 34 1 10.1526 -2.4417 -0.9031 35 1 10.1594 -2.4453 0.8769 36 1 9.5362 -5.0512 -0.0167 37 1 11.3223 -7.8685 -0.0295 38 1 1.2672 -2.8140 1.0276 39 1 0.4981 -2.3669 -0.5141 40 1 2.0375 -3.2604 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162601119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -5.018840 kcal Electronic energy + Delta-G solvation = -20060.268166 eV Core-core repulsion = 16874.724942 eV Total energy + Delta-G solvation = -3185.543224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99261 -39.22602 -36.03605 -34.48059 -34.19046 -33.35312 -31.91186 -29.70123 -28.71930 -27.74919 -25.26977 -23.51317 -22.80129 -21.97991 -21.16253 -20.44664 -18.15447 -17.05476 -16.88432 -15.79712 -15.71079 -15.54178 -15.15839 -14.83720 -14.45561 -14.28006 -13.73646 -13.58404 -13.33594 -13.24973 -13.13519 -12.93738 -12.71776 -12.44834 -12.28546 -11.86319 -11.62154 -10.93747 -10.90709 -10.78051 -10.58929 -10.38066 -10.12390 -10.01705 -9.77259 -9.66141 -9.21994 -8.95164 -8.86080 -6.90839 -5.74946 -3.03734 0.35026 0.86935 2.57026 3.05084 3.45303 3.50862 3.53300 3.58364 3.78977 4.25768 4.40781 4.43568 4.59477 4.62768 4.88084 5.02602 5.14205 5.18121 5.22187 5.23406 5.29230 5.35078 5.47833 5.59844 5.67345 5.68795 5.70879 5.83684 6.01380 6.10090 6.22914 6.27179 6.35657 6.47469 6.82665 6.86876 7.33216 7.62071 7.72871 8.13662 8.44041 9.55155 10.12687 10.47461 11.48195 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002533 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.594793 B =11053.121923 C =11825.346372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.082 4.082 4 C -0.115 4.115 5 C 0.080 3.920 6 C 0.568 3.432 7 O -0.537 6.537 8 N -0.705 5.705 9 C 0.120 3.880 10 C -0.138 4.138 11 C 0.157 3.843 12 N -0.734 5.734 13 C -0.238 4.238 14 H 0.072 0.928 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 N -0.455 5.455 22 C 0.126 3.874 23 C -0.109 4.109 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.411 0.589 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.336 14.711 0.099 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.135 4.135 5 C -0.058 4.058 6 C 0.352 3.648 7 O -0.414 6.414 8 N -0.356 5.356 9 C -0.003 4.003 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.369 4.369 14 H 0.090 0.910 15 C -0.212 4.212 16 N -0.583 5.583 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 N -0.167 5.167 22 C -0.015 4.015 23 C -0.166 4.166 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.157 14.662 0.098 28.258 hybrid contribution 0.143 -0.101 0.016 0.176 sum -24.014 14.561 0.114 28.084 Atomic orbital electron populations 1.20872 0.89864 1.03552 1.02982 1.20958 0.97807 0.93582 0.99732 1.21507 0.93604 0.98412 0.97235 1.22108 0.94889 0.99065 0.97477 1.21159 0.94224 0.89620 1.00804 1.17860 0.85732 0.84074 0.77122 1.90784 1.65888 1.34204 1.50519 1.45934 1.08276 1.08514 1.72862 1.21443 0.78146 0.98087 1.02627 1.21947 0.98664 0.94075 1.02915 1.20522 0.89974 0.88445 0.98214 1.42353 1.05168 1.00736 1.89573 1.19299 0.83660 0.91587 1.42405 0.91028 1.24761 0.97683 0.95650 1.03092 1.69670 1.31806 0.98870 1.57976 0.86091 0.84841 0.77968 0.77167 1.20512 1.21862 1.21855 1.67388 1.08145 1.30427 1.10718 1.21173 0.89108 0.95365 0.95814 1.20824 0.99323 0.92925 1.03483 0.90426 0.91090 0.90444 0.84082 0.83378 0.75271 0.91096 0.91090 0.91182 0.91186 0.96012 0.96018 0.78275 0.93567 0.90055 0.90214 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.62 36.00 0.35 -0.13 16 2 C -0.12 -0.89 5.91 -104.36 -0.62 -1.51 16 3 C -0.08 -0.64 9.85 -39.31 -0.39 -1.02 16 4 C -0.11 -1.19 9.63 -39.05 -0.38 -1.56 16 5 C 0.08 1.01 6.75 -83.01 -0.56 0.45 16 6 C 0.57 8.32 7.81 -12.18 -0.10 8.22 16 7 O -0.54 -9.23 16.32 5.35 0.09 -9.14 16 8 N -0.71 -9.70 5.55 -61.14 -0.34 -10.04 16 9 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 10 C -0.14 -2.23 5.44 -26.73 -0.15 -2.38 16 11 C 0.16 3.21 6.26 -4.04 -0.03 3.19 16 12 N -0.73 -19.09 5.60 -59.90 -0.34 -19.43 16 13 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 14 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 16 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 17 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 N -0.45 -5.32 9.45 -6.06 -0.06 -5.38 16 22 C 0.13 1.16 6.78 -82.60 -0.56 0.60 16 23 C -0.11 -0.69 9.77 36.01 0.35 -0.34 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.23 8.09 -51.93 -0.42 -0.20 16 26 H 0.08 0.25 5.95 -51.93 -0.31 -0.06 16 27 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 28 H 0.15 1.45 7.64 -52.49 -0.40 1.05 16 29 H 0.41 5.16 7.80 -40.82 -0.32 4.84 16 30 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 37 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.33 5.93 -51.93 -0.31 0.02 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -34.13 340.40 -7.99 -42.13 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.84 Total: 7.28 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.34 Total: -0.31 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.01 Total: -62.83 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.13 -7.99 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162601119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.110 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds