Wall clock time and date at job start Mon Mar 30 2020 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38626 * 120.32624 * 2 1 4 4 C 1.38597 * 118.48665 * 179.72555 * 3 2 1 5 5 C 1.39306 * 119.05909 * 0.49373 * 4 3 2 6 6 C 1.48169 * 119.72240 * 179.77364 * 5 4 3 7 7 O 1.21513 * 119.99903 * 359.72452 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.72159 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99838 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00037 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99973 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46933 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46921 * 120.00143 * 17 15 13 20 20 H 1.48498 * 109.46946 * 240.00460 * 17 15 13 21 21 N 1.32724 * 120.55333 * 359.49344 * 5 4 3 22 22 C 1.31523 * 121.64359 * 0.25842 * 21 5 4 23 23 C 1.50700 * 119.54722 * 179.97438 * 22 21 5 24 24 H 1.08997 * 109.47290 * 270.02353 * 1 2 3 25 25 H 1.09004 * 109.46815 * 30.02548 * 1 2 3 26 26 H 1.09002 * 109.47442 * 150.02267 * 1 2 3 27 27 H 1.07999 * 120.75496 * 359.97376 * 3 2 1 28 28 H 1.08001 * 120.46767 * 180.26260 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 35 35 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 36 36 H 0.96992 * 119.99973 * 359.97438 * 12 11 10 37 37 H 0.97003 * 120.00466 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.47041 * 90.00174 * 23 22 21 39 39 H 1.08996 * 109.46939 * 209.99692 * 23 22 21 40 40 H 1.08998 * 109.47174 * 329.99636 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0058 5 6 4.2294 -0.0867 0.0010 6 6 5.7096 -0.1513 0.0020 7 8 6.3625 0.8735 0.0020 8 7 6.3319 -1.3469 0.0030 9 6 7.7955 -1.4108 -0.0021 10 6 8.2421 -2.8742 -0.0068 11 6 9.7706 -2.9409 -0.0127 12 7 10.1981 -4.3422 -0.0178 13 6 11.5322 -4.6509 -0.0231 14 1 12.2692 -3.8614 -0.0231 15 6 11.9374 -5.9786 -0.0274 16 7 11.0393 -6.9407 -0.0269 17 14 13.7573 -6.3998 -0.0353 18 1 14.5552 -5.1474 -0.0353 19 1 14.0864 -7.1959 1.1743 20 1 14.0770 -7.1908 -1.2508 21 7 3.5216 -1.2095 0.0010 22 6 2.2064 -1.1961 0.0005 23 6 1.4500 -2.4995 0.0000 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6846 2.1419 -0.0004 28 1 4.1693 2.0649 0.0103 29 1 5.8107 -2.1650 0.0027 30 1 8.1780 -0.9114 -0.8924 31 1 8.1839 -0.9153 0.8876 32 1 7.8596 -3.3735 0.8834 33 1 7.8537 -3.3698 -0.8966 34 1 10.1526 -2.4417 -0.9031 35 1 10.1594 -2.4453 0.8769 36 1 9.5362 -5.0512 -0.0167 37 1 11.3223 -7.8685 -0.0295 38 1 1.2672 -2.8140 1.0276 39 1 0.4981 -2.3669 -0.5141 40 1 2.0375 -3.2604 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162601119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:03 Heat of formation + Delta-G solvation = -29.027977 kcal Electronic energy + Delta-G solvation = -20061.309280 eV Core-core repulsion = 16874.724942 eV Total energy + Delta-G solvation = -3186.584338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79377 -40.26590 -37.56792 -36.00163 -34.98173 -34.05432 -33.68837 -31.37364 -29.29765 -28.57724 -26.85788 -24.77498 -23.88211 -22.95798 -22.59230 -21.51478 -19.39434 -18.83810 -17.80792 -16.96727 -16.93342 -16.49979 -16.19299 -16.06618 -15.61043 -15.34912 -15.30844 -14.97227 -14.47427 -14.14479 -13.96840 -13.66522 -13.59074 -13.33011 -13.17914 -12.96718 -12.84970 -12.61967 -12.47482 -12.32137 -12.10275 -12.04954 -11.81336 -11.42861 -10.96835 -10.78760 -10.56853 -10.26243 -9.78252 -9.03380 -7.97384 -5.27006 -0.42502 0.19702 1.47238 1.48308 1.58733 1.60915 1.98660 2.55370 2.76104 3.00120 3.36444 3.66702 3.71944 3.78374 3.86681 3.94473 4.03902 4.23292 4.25560 4.42397 4.56798 4.66830 4.68000 4.69152 4.73942 4.76068 4.82667 4.90708 5.05578 5.15422 5.21782 5.23255 5.27215 5.28360 5.33816 5.48191 5.68994 6.25105 6.32659 6.76471 7.04733 7.31406 8.05660 8.29764 9.26518 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002533 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.594793 B =11053.121923 C =11825.346372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.080 4.080 4 C -0.122 4.122 5 C 0.048 3.952 6 C 0.566 3.434 7 O -0.571 6.571 8 N -0.701 5.701 9 C 0.131 3.869 10 C -0.119 4.119 11 C 0.154 3.846 12 N -0.748 5.748 13 C -0.248 4.248 14 H 0.076 0.924 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.977 3.023 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.291 1.291 21 N -0.475 5.475 22 C 0.109 3.891 23 C -0.107 4.107 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.175 0.825 28 H 0.146 0.854 29 H 0.417 0.583 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.375 0.625 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.244 15.530 0.099 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.110 4.110 3 C -0.105 4.105 4 C -0.143 4.143 5 C -0.089 4.089 6 C 0.352 3.648 7 O -0.451 6.451 8 N -0.352 5.352 9 C 0.007 3.993 10 C -0.157 4.157 11 C 0.027 3.973 12 N -0.391 5.391 13 C -0.380 4.380 14 H 0.094 0.906 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.218 1.218 21 N -0.188 5.188 22 C -0.032 4.032 23 C -0.164 4.164 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.193 0.807 28 H 0.164 0.836 29 H 0.254 0.746 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.207 0.793 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.074 15.509 0.098 30.338 hybrid contribution 0.595 -0.302 0.019 0.667 sum -25.479 15.207 0.117 29.672 Atomic orbital electron populations 1.20994 0.86945 1.05024 1.04200 1.21408 0.99788 0.92712 0.97045 1.21903 0.92471 1.00136 0.96002 1.22230 0.96307 0.98164 0.97567 1.20898 0.92961 0.90919 1.04081 1.18264 0.86936 0.83518 0.76118 1.90747 1.66950 1.35132 1.52240 1.45845 1.07785 1.08841 1.72686 1.21222 0.78918 0.96707 1.02453 1.21701 0.95676 0.95158 1.03141 1.20668 0.92771 0.85706 0.98190 1.42564 1.04317 1.02638 1.89555 1.19698 0.85017 0.91920 1.41367 0.90578 1.25626 1.02139 0.95644 1.03540 1.69820 1.33802 0.98989 1.59420 0.85024 0.79736 0.77923 0.76775 1.19068 1.21836 1.21831 1.67317 1.09593 1.30320 1.11554 1.21764 0.88533 0.97356 0.95582 1.20920 0.99911 0.91268 1.04268 0.89067 0.89491 0.89176 0.80728 0.83608 0.74583 0.91321 0.91304 0.90953 0.90964 0.95744 0.95742 0.79290 0.93872 0.89194 0.87581 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.62 71.23 0.69 0.19 16 2 C -0.11 -1.34 5.91 -19.70 -0.12 -1.45 16 3 C -0.08 -1.07 9.85 22.45 0.22 -0.84 16 4 C -0.12 -2.48 9.63 22.61 0.22 -2.26 16 5 C 0.05 1.23 6.75 41.91 0.28 1.51 16 6 C 0.57 17.07 7.81 86.88 0.68 17.74 16 7 O -0.57 -20.30 16.32 -3.76 -0.06 -20.36 16 8 N -0.70 -19.64 5.55 -465.65 -2.58 -22.22 16 9 C 0.13 3.86 5.67 86.38 0.49 4.35 16 10 C -0.12 -3.84 5.44 30.59 0.17 -3.67 16 11 C 0.15 6.30 6.26 86.38 0.54 6.84 16 12 N -0.75 -39.19 5.60 -343.44 -1.92 -41.11 16 13 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 14 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 15 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 17 Si 0.98 46.89 29.55 68.60 2.03 48.91 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 N -0.48 -11.05 9.45 -173.08 -1.64 -12.69 16 22 C 0.11 1.84 6.78 42.68 0.29 2.13 16 23 C -0.11 -1.14 9.77 71.24 0.70 -0.45 16 24 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.09 0.16 8.09 -2.38 -0.02 0.14 16 26 H 0.09 0.20 5.95 -2.39 -0.01 0.18 16 27 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 28 H 0.15 2.91 7.64 -2.91 -0.02 2.89 16 29 H 0.42 10.64 7.80 -92.71 -0.72 9.92 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.38 20.62 7.67 -92.71 -0.71 19.91 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.11 0.53 5.93 -2.39 -0.01 0.52 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.01 340.40 1.19 -72.82 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.38 Total: 27.98 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.46 Total: 6.60 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -5.86 Total: -135.95 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -74.01 1.19 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162601119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds