Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38603 * 120.32043 * 2 1 4 4 N 1.31492 * 120.90075 * 180.02562 * 3 2 1 5 5 C 1.32747 * 121.64432 * 359.97438 * 4 3 2 6 6 C 1.48172 * 119.72425 * 180.02562 * 5 4 3 7 7 O 1.21512 * 119.99886 * 174.18770 * 6 5 4 8 8 N 1.34770 * 119.99732 * 354.19050 * 6 5 4 9 9 C 1.46502 * 119.99758 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47334 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47186 * 180.02562 * 10 9 8 12 12 N 1.46493 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.36936 * 120.00148 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.38817 * 120.00269 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99858 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00150 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47356 * 59.99862 * 17 15 13 19 19 H 1.48502 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47233 * 299.99724 * 17 15 13 21 21 C 1.39267 * 120.55519 * 0.02562 * 5 4 3 22 22 C 1.50696 * 120.47119 * 179.97438 * 21 5 4 23 23 C 1.38581 * 120.32875 * 180.29122 * 2 1 3 24 24 H 1.08998 * 109.46996 * 90.00589 * 1 2 3 25 25 H 1.09009 * 109.47092 * 209.99957 * 1 2 3 26 26 H 1.08994 * 109.47889 * 330.00178 * 1 2 3 27 27 H 1.08005 * 119.55188 * 0.04238 * 3 2 1 28 28 H 0.96996 * 120.00852 * 0.02562 * 8 6 5 29 29 H 1.08995 * 109.47665 * 300.00520 * 9 8 6 30 30 H 1.09013 * 109.46897 * 60.00494 * 9 8 6 31 31 H 1.09004 * 109.47061 * 300.00698 * 10 9 8 32 32 H 1.08995 * 109.46720 * 60.00485 * 10 9 8 33 33 H 1.08994 * 109.46930 * 300.00260 * 11 10 9 34 34 H 1.09001 * 109.47058 * 59.99981 * 11 10 9 35 35 H 0.97005 * 120.00062 * 0.02562 * 12 11 10 36 36 H 0.96999 * 120.00329 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47312 * 83.11762 * 22 21 5 38 38 H 1.08999 * 109.47391 * 323.11315 * 22 21 5 39 39 H 1.09005 * 109.47225 * 203.11320 * 22 21 5 40 40 H 1.07999 * 120.75586 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5215 1.2098 -0.0005 5 6 4.2294 0.0868 -0.0005 6 6 5.7097 0.1514 -0.0005 7 8 6.3624 -0.8680 0.1060 8 7 6.3322 1.3409 -0.1187 9 6 7.7958 1.4049 -0.1181 10 6 8.2428 2.8608 -0.2649 11 6 9.7714 2.9275 -0.2649 12 7 10.1993 4.3215 -0.4048 13 6 11.5334 4.6289 -0.4307 14 1 12.2702 3.8436 -0.3476 15 6 11.9389 5.9500 -0.5628 16 7 11.0410 6.9070 -0.6635 17 14 13.7589 6.3693 -0.5974 18 1 14.4041 5.6798 -1.7435 19 1 13.9259 7.8374 -0.7460 20 1 14.3936 5.9242 0.6692 21 6 3.5924 -1.1517 -0.0005 22 6 4.3978 -2.4253 -0.0012 23 6 2.2068 -1.1961 -0.0061 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5139 26 1 -0.3635 0.8899 0.5138 27 1 1.6646 2.1306 0.0007 28 1 5.8113 2.1547 -0.2033 29 1 8.1769 1.0002 0.8194 30 1 8.1854 0.8199 -0.9514 31 1 7.8617 3.2651 -1.2027 32 1 7.8533 3.4461 0.5681 33 1 10.1527 2.5231 0.6727 34 1 10.1605 2.3422 -1.0980 35 1 9.5375 5.0269 -0.4791 36 1 11.3243 7.8301 -0.7562 37 1 4.6965 -2.6668 1.0189 38 1 5.2865 -2.2930 -0.6183 39 1 3.7930 -3.2375 -0.4045 40 1 1.6846 -2.1415 -0.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162970337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -26.537914 kcal Electronic energy + Delta-G solvation = -20171.588483 eV Core-core repulsion = 16985.112123 eV Total energy + Delta-G solvation = -3186.476361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84680 -40.11530 -37.57789 -36.07462 -34.77681 -34.39874 -33.66544 -31.38286 -28.87391 -28.35645 -26.83294 -24.92150 -24.25972 -22.67801 -22.42699 -21.57547 -19.39338 -18.83348 -17.99607 -17.01892 -16.90296 -16.48590 -16.05537 -16.01047 -15.47597 -15.28471 -15.04705 -14.98942 -14.44022 -14.10745 -14.06349 -13.74623 -13.44693 -13.33465 -13.28184 -13.19324 -12.78595 -12.70556 -12.60179 -12.43964 -12.10113 -12.07506 -11.79549 -11.09821 -10.94287 -10.59754 -10.45782 -10.23677 -9.77590 -9.03061 -7.96689 -5.26462 -0.39562 0.21034 1.47208 1.50892 1.56993 1.65855 2.03405 2.56062 2.77668 3.13650 3.36744 3.68188 3.73547 3.75277 3.89722 3.95564 4.05225 4.21547 4.26759 4.42297 4.50334 4.61941 4.68436 4.70632 4.77373 4.83235 4.86336 4.87972 5.08954 5.18325 5.22352 5.25487 5.29203 5.31361 5.45059 5.47948 5.68509 6.25498 6.36450 6.77372 7.09852 7.31704 8.06292 8.30251 9.26805 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.002531 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.455569 B =11061.882748 C =11764.339865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C 0.079 3.921 4 N -0.471 5.471 5 C 0.033 3.967 6 C 0.563 3.437 7 O -0.558 6.558 8 N -0.704 5.704 9 C 0.133 3.867 10 C -0.119 4.119 11 C 0.154 3.846 12 N -0.748 5.748 13 C -0.251 4.251 14 H 0.076 0.924 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.978 3.022 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.277 1.277 21 C -0.078 4.078 22 C -0.113 4.113 23 C -0.091 4.091 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.187 0.813 28 H 0.415 0.585 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.375 0.625 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.678 -17.720 1.277 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.082 4.082 4 N -0.182 5.182 5 C -0.103 4.103 6 C 0.349 3.651 7 O -0.437 6.437 8 N -0.355 5.355 9 C 0.009 3.991 10 C -0.157 4.157 11 C 0.027 3.973 12 N -0.391 5.391 13 C -0.383 4.383 14 H 0.094 0.906 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.806 3.194 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.203 1.203 21 C -0.081 4.081 22 C -0.169 4.169 23 C -0.116 4.116 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.203 0.797 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.207 0.793 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -24.498 -17.683 1.357 30.243 hybrid contribution 0.379 0.522 -0.076 0.649 sum -24.119 -17.161 1.281 29.629 Atomic orbital electron populations 1.20887 0.86984 1.04860 1.04091 1.21586 0.99721 0.93223 0.95622 1.23242 0.88536 0.99658 0.96804 1.67461 1.10260 1.30090 1.10361 1.20817 0.93201 0.90495 1.05776 1.18242 0.86899 0.83468 0.76465 1.90713 1.67033 1.34443 1.51510 1.45866 1.07705 1.09500 1.72434 1.21191 0.78985 0.96603 1.02334 1.21704 0.95645 0.95397 1.02982 1.20663 0.92792 0.85813 0.98031 1.42554 1.04294 1.03536 1.88707 1.19631 0.85036 0.92435 1.41160 0.90586 1.25635 1.02182 0.95706 1.03396 1.69810 1.33967 0.99609 1.58646 0.85154 0.79618 0.76398 0.78240 1.20295 1.21945 1.20299 1.21134 0.95648 0.95725 0.95586 1.20982 0.99866 0.92706 1.03370 1.21812 0.91838 1.00301 0.97671 0.89173 0.89634 0.89545 0.79661 0.74775 0.91384 0.91293 0.91032 0.91061 0.95792 0.95742 0.79311 0.93865 0.90883 0.90670 0.89477 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.03 71.24 0.71 0.25 16 2 C -0.10 -1.17 5.91 -19.70 -0.12 -1.29 16 3 C 0.08 1.23 10.86 84.83 0.92 2.16 16 4 N -0.47 -10.71 9.56 -184.90 -1.77 -12.48 16 5 C 0.03 0.84 6.75 41.89 0.28 1.12 16 6 C 0.56 16.50 7.75 86.88 0.67 17.17 16 7 O -0.56 -18.52 13.32 -3.75 -0.05 -18.57 16 8 N -0.70 -19.46 5.54 -465.64 -2.58 -22.04 16 9 C 0.13 3.86 5.67 86.38 0.49 4.35 16 10 C -0.12 -3.85 5.44 30.60 0.17 -3.68 16 11 C 0.15 6.31 6.26 86.38 0.54 6.85 16 12 N -0.75 -39.26 5.60 -343.47 -1.92 -41.19 16 13 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 15 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 16 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 17 Si 0.98 46.85 29.55 68.60 2.03 48.87 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.08 -1.58 5.93 -19.52 -0.12 -1.69 16 22 C -0.11 -2.16 8.73 71.23 0.62 -1.54 16 23 C -0.09 -1.22 9.51 22.45 0.21 -1.00 16 24 H 0.09 0.23 8.14 -2.39 -0.02 0.22 16 25 H 0.08 0.17 8.10 -2.38 -0.02 0.15 16 26 H 0.09 0.20 8.09 -2.39 -0.02 0.18 16 27 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.42 10.56 7.82 -92.71 -0.72 9.83 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.37 20.67 7.67 -92.70 -0.71 19.96 16 36 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.85 5.87 -2.39 -0.01 1.84 16 39 H 0.09 1.11 8.05 -2.38 -0.02 1.09 16 40 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -72.45 339.26 1.30 -71.15 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.38 Total: 29.22 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.70 Total: 5.05 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -5.99 Total: -135.72 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.45 1.30 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162970337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.610 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds