Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38609 * 120.32153 * 2 1 4 4 N 1.31494 * 120.89912 * 179.74287 * 3 2 1 5 5 C 1.32749 * 121.64268 * 0.57098 * 4 3 2 6 6 C 1.48169 * 119.72246 * 179.70638 * 5 4 3 7 7 O 1.21513 * 119.99903 * 179.72909 * 6 5 4 8 8 N 1.34777 * 119.99782 * 359.72616 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99838 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99934 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99691 * 17 15 13 19 19 H 1.48504 * 109.46915 * 209.99770 * 17 15 13 20 20 H 1.48503 * 109.47098 * 329.99624 * 17 15 13 21 21 C 1.39264 * 120.55264 * 359.43411 * 5 4 3 22 22 C 1.38576 * 120.32736 * 180.02562 * 2 1 3 23 23 C 1.50705 * 120.75686 * 359.95116 * 22 2 1 24 24 H 1.09004 * 109.46894 * 269.97645 * 1 2 3 25 25 H 1.09004 * 109.47125 * 29.97634 * 1 2 3 26 26 H 1.08997 * 109.47018 * 149.97693 * 1 2 3 27 27 H 1.08005 * 119.54931 * 0.04645 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 34 34 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 35 35 H 0.96992 * 119.99973 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99959 * 179.97438 * 16 15 13 37 37 H 1.08007 * 120.46933 * 180.29611 * 21 5 4 38 38 H 1.08997 * 109.47061 * 270.02612 * 23 22 2 39 39 H 1.09002 * 109.46796 * 30.02433 * 23 22 2 40 40 H 1.08995 * 109.47130 * 150.02180 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0051 5 6 4.2295 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3626 -0.8735 -0.0019 8 7 6.3320 1.3468 -0.0014 9 6 7.7956 1.4107 0.0042 10 6 8.2423 2.8741 0.0100 11 6 9.7708 2.9407 0.0165 12 7 10.1984 4.3420 0.0227 13 6 11.5325 4.6507 0.0286 14 1 12.2694 3.8612 0.0283 15 6 11.9377 5.9784 0.0339 16 7 13.2200 6.2751 0.0401 17 14 10.6630 7.3439 0.0337 18 1 10.3205 7.7016 1.4336 19 1 11.2140 8.5352 -0.6610 20 1 9.4413 6.8805 -0.6720 21 6 3.5924 -1.1517 -0.0010 22 6 2.2067 -1.1961 -0.0005 23 6 1.4781 -2.5153 0.0000 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6647 2.1306 0.0008 28 1 5.8109 2.1650 -0.0007 29 1 8.1778 0.9107 0.8943 30 1 8.1844 0.9158 -0.8857 31 1 7.8601 3.3740 -0.8800 32 1 7.8536 3.3691 0.9000 33 1 10.1525 2.4409 0.9067 34 1 10.1599 2.4457 -0.8733 35 1 9.5365 5.0510 0.0218 36 1 13.5031 7.2028 0.0435 37 1 4.1696 -2.0645 -0.0011 38 1 1.3027 -2.8331 1.0277 39 1 0.5232 -2.4030 -0.5135 40 1 2.0812 -3.2637 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162974976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = -2.515735 kcal Electronic energy + Delta-G solvation = -20032.681365 eV Core-core repulsion = 16847.246684 eV Total energy + Delta-G solvation = -3185.434681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03908 -39.26850 -36.17675 -35.11255 -34.40159 -32.83587 -31.96557 -30.13527 -28.89234 -27.68923 -25.48897 -23.24851 -23.19560 -21.96757 -21.25665 -20.24953 -18.04778 -17.39417 -17.28564 -15.84690 -15.75087 -15.58420 -15.18267 -15.13355 -14.45737 -14.38160 -13.96562 -13.56865 -13.46293 -13.37931 -13.14427 -13.07201 -12.78589 -12.44800 -12.42040 -12.00623 -11.98028 -11.16813 -11.01368 -10.85703 -10.67785 -10.41802 -10.13203 -9.89801 -9.80524 -9.57490 -9.39279 -9.04618 -8.88164 -7.22252 -5.75003 -3.10915 0.29971 0.80404 2.51916 2.98162 3.38868 3.41464 3.46476 3.54314 3.85088 4.18581 4.31829 4.38715 4.42654 4.60696 4.86139 4.92735 4.96616 4.99208 5.08082 5.15732 5.24012 5.28245 5.43106 5.46263 5.54655 5.55604 5.60449 5.80882 5.85940 5.95294 5.99107 6.17522 6.21882 6.39022 6.71619 6.74922 7.25644 7.54934 8.01302 8.07448 8.43897 9.22772 9.94955 10.14669 11.43368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035410 B = 0.002609 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.550815 B =10730.127201 C =11484.303801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C 0.102 3.898 4 N -0.459 5.459 5 C 0.077 3.923 6 C 0.568 3.432 7 O -0.536 6.536 8 N -0.707 5.707 9 C 0.121 3.879 10 C -0.142 4.142 11 C 0.161 3.839 12 N -0.757 5.757 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.887 3.113 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.108 4.108 22 C -0.053 4.053 23 C -0.119 4.119 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.411 0.589 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.545 -15.491 -0.074 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.058 4.058 4 N -0.170 5.170 5 C -0.061 4.061 6 C 0.352 3.648 7 O -0.412 6.412 8 N -0.357 5.357 9 C -0.003 4.003 10 C -0.180 4.180 11 C 0.033 3.967 12 N -0.403 5.403 13 C -0.374 4.374 14 H 0.109 0.891 15 C -0.193 4.193 16 N -0.582 5.582 17 Si 0.717 3.283 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.129 4.129 22 C -0.061 4.061 23 C -0.175 4.175 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.180 0.820 28 H 0.247 0.753 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -29.284 -15.458 -0.071 33.114 hybrid contribution -1.452 0.813 0.003 1.664 sum -30.736 -14.645 -0.068 34.047 Atomic orbital electron populations 1.20833 0.89872 1.03548 1.02967 1.21036 0.97830 0.93636 0.99804 1.22701 0.89263 0.97689 0.96156 1.67544 1.08730 1.30274 1.10484 1.21149 0.94269 0.89657 1.00984 1.17857 0.85761 0.84048 0.77094 1.90790 1.65912 1.34174 1.50355 1.45917 1.08219 1.08525 1.73076 1.21422 0.78207 0.97782 1.02884 1.21997 0.98699 0.94546 1.02786 1.20499 0.89781 0.87343 0.99085 1.42693 1.04910 1.01392 1.91282 1.19077 0.82158 0.93250 1.42958 0.89140 1.24696 0.95708 0.96858 1.02070 1.69706 1.13066 1.17852 1.57605 0.86510 0.81375 0.82665 0.77756 1.21072 1.21722 1.20331 1.22018 0.94153 0.99157 0.97586 1.20214 0.93249 0.95909 0.96695 1.20892 1.00464 0.92970 1.03204 0.90432 0.90830 0.90741 0.82038 0.75326 0.90906 0.90904 0.91228 0.91225 0.95129 0.95186 0.80661 0.93059 0.83396 0.90209 0.90494 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 9.65 36.01 0.35 -0.08 16 2 C -0.12 -0.84 5.91 -104.36 -0.62 -1.45 16 3 C 0.10 0.84 10.86 -17.56 -0.19 0.64 16 4 N -0.46 -5.02 9.54 -9.80 -0.09 -5.11 16 5 C 0.08 0.92 6.75 -83.01 -0.56 0.36 16 6 C 0.57 8.00 7.81 -12.18 -0.10 7.90 16 7 O -0.54 -8.94 16.32 5.35 0.09 -8.86 16 8 N -0.71 -9.19 5.55 -61.14 -0.34 -9.53 16 9 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 10 C -0.14 -2.13 5.44 -26.73 -0.15 -2.27 16 11 C 0.16 3.13 6.26 -4.04 -0.03 3.10 16 12 N -0.76 -18.39 5.41 -59.90 -0.32 -18.72 16 13 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 14 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 15 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 16 N -0.93 -29.81 13.97 55.49 0.78 -29.03 16 17 Si 0.89 22.36 27.74 -169.99 -4.71 17.65 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 21 C -0.11 -1.09 9.34 -39.05 -0.36 -1.46 16 22 C -0.05 -0.40 5.91 -104.35 -0.62 -1.02 16 23 C -0.12 -0.55 9.67 36.01 0.35 -0.20 16 24 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 26 H 0.07 0.21 6.06 -51.93 -0.31 -0.11 16 27 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 28 H 0.41 4.79 7.80 -40.82 -0.32 4.47 16 29 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.15 1.44 7.64 -52.48 -0.40 1.04 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.24 6.07 -51.93 -0.32 -0.07 16 40 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -34.94 337.37 -7.53 -42.47 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.81 Total: 6.15 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.20 Total: -0.11 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.02 Total: -62.39 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.94 -7.53 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162974976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.954 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds