Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38609 * 120.32153 * 2 1 4 4 N 1.31494 * 120.89912 * 179.74287 * 3 2 1 5 5 C 1.32749 * 121.64268 * 0.57098 * 4 3 2 6 6 C 1.48169 * 119.72246 * 179.70638 * 5 4 3 7 7 O 1.21513 * 119.99903 * 179.72909 * 6 5 4 8 8 N 1.34777 * 119.99782 * 359.72616 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99838 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99934 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99691 * 17 15 13 19 19 H 1.48504 * 109.46915 * 209.99770 * 17 15 13 20 20 H 1.48503 * 109.47098 * 329.99624 * 17 15 13 21 21 C 1.39264 * 120.55264 * 359.43411 * 5 4 3 22 22 C 1.38576 * 120.32736 * 180.02562 * 2 1 3 23 23 C 1.50705 * 120.75686 * 359.95116 * 22 2 1 24 24 H 1.09004 * 109.46894 * 269.97645 * 1 2 3 25 25 H 1.09004 * 109.47125 * 29.97634 * 1 2 3 26 26 H 1.08997 * 109.47018 * 149.97693 * 1 2 3 27 27 H 1.08005 * 119.54931 * 0.04645 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 34 34 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 35 35 H 0.96992 * 119.99973 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99959 * 179.97438 * 16 15 13 37 37 H 1.08007 * 120.46933 * 180.29611 * 21 5 4 38 38 H 1.08997 * 109.47061 * 270.02612 * 23 22 2 39 39 H 1.09002 * 109.46796 * 30.02433 * 23 22 2 40 40 H 1.08995 * 109.47130 * 150.02180 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0051 5 6 4.2295 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3626 -0.8735 -0.0019 8 7 6.3320 1.3468 -0.0014 9 6 7.7956 1.4107 0.0042 10 6 8.2423 2.8741 0.0100 11 6 9.7708 2.9407 0.0165 12 7 10.1984 4.3420 0.0227 13 6 11.5325 4.6507 0.0286 14 1 12.2694 3.8612 0.0283 15 6 11.9377 5.9784 0.0339 16 7 13.2200 6.2751 0.0401 17 14 10.6630 7.3439 0.0337 18 1 10.3205 7.7016 1.4336 19 1 11.2140 8.5352 -0.6610 20 1 9.4413 6.8805 -0.6720 21 6 3.5924 -1.1517 -0.0010 22 6 2.2067 -1.1961 -0.0005 23 6 1.4781 -2.5153 0.0000 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6647 2.1306 0.0008 28 1 5.8109 2.1650 -0.0007 29 1 8.1778 0.9107 0.8943 30 1 8.1844 0.9158 -0.8857 31 1 7.8601 3.3740 -0.8800 32 1 7.8536 3.3691 0.9000 33 1 10.1525 2.4409 0.9067 34 1 10.1599 2.4457 -0.8733 35 1 9.5365 5.0510 0.0218 36 1 13.5031 7.2028 0.0435 37 1 4.1696 -2.0645 -0.0011 38 1 1.3027 -2.8331 1.0277 39 1 0.5232 -2.4030 -0.5135 40 1 2.0812 -3.2637 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162974976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = -27.787854 kcal Electronic energy + Delta-G solvation = -20033.777246 eV Core-core repulsion = 16847.246684 eV Total energy + Delta-G solvation = -3186.530562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79075 -40.24636 -37.67631 -36.10144 -35.58301 -33.87352 -33.42718 -31.78301 -29.47193 -28.35905 -26.92472 -24.53615 -23.79851 -23.33109 -22.71142 -21.24554 -19.70568 -18.72509 -18.06309 -16.96756 -16.89983 -16.53012 -16.18007 -16.01722 -15.91651 -15.47022 -15.28089 -14.83271 -14.68132 -14.09949 -13.89052 -13.80158 -13.71023 -13.67785 -13.45934 -12.89159 -12.72727 -12.58562 -12.55744 -12.47270 -12.12656 -12.02915 -11.82093 -11.44766 -10.98927 -10.57862 -10.52077 -10.28115 -9.89424 -9.32893 -8.03971 -5.38990 -0.42898 0.17744 1.38212 1.42957 1.50295 1.61093 1.97678 2.48438 2.77438 3.08660 3.26967 3.52372 3.66242 3.73282 3.85986 3.89127 4.03792 4.18600 4.20650 4.27698 4.52375 4.63234 4.65950 4.67892 4.69064 4.75884 4.84216 4.88561 4.99124 5.12226 5.19610 5.21115 5.25824 5.31557 5.37452 5.67548 5.73698 6.19614 6.32195 6.74964 7.05120 7.06140 7.80723 8.01494 9.17430 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035410 B = 0.002609 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.550815 B =10730.127201 C =11484.303801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C 0.093 3.907 4 N -0.476 5.476 5 C 0.048 3.952 6 C 0.565 3.435 7 O -0.572 6.572 8 N -0.700 5.700 9 C 0.128 3.872 10 C -0.123 4.123 11 C 0.155 3.845 12 N -0.759 5.759 13 C -0.241 4.241 14 H 0.054 0.946 15 C -0.068 4.068 16 N -0.984 5.984 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.248 1.248 21 C -0.119 4.119 22 C -0.057 4.057 23 C -0.118 4.118 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.190 0.810 28 H 0.419 0.581 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.368 0.632 36 H 0.259 0.741 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.924 -15.091 -0.109 38.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.068 4.068 4 N -0.188 5.188 5 C -0.088 4.088 6 C 0.351 3.649 7 O -0.452 6.452 8 N -0.350 5.350 9 C 0.004 3.996 10 C -0.161 4.161 11 C 0.029 3.971 12 N -0.405 5.405 13 C -0.372 4.372 14 H 0.072 0.928 15 C -0.259 4.259 16 N -0.634 5.634 17 Si 0.789 3.211 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.172 1.172 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.174 4.174 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.207 0.793 28 H 0.256 0.744 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.202 0.798 36 H 0.068 0.932 37 H 0.159 0.841 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.711 -15.084 -0.108 36.932 hybrid contribution -0.137 0.581 0.021 0.597 sum -33.847 -14.503 -0.087 36.824 Atomic orbital electron populations 1.20951 0.87067 1.04962 1.04118 1.21454 0.99716 0.92763 0.97227 1.23277 0.88523 0.99509 0.95467 1.67478 1.10133 1.29909 1.11266 1.20864 0.93034 0.90848 1.04069 1.18263 0.86929 0.83578 0.76136 1.90755 1.67004 1.35257 1.52177 1.45803 1.07721 1.08796 1.72730 1.21223 0.78937 0.96892 1.02499 1.21762 0.95100 0.95362 1.03857 1.20647 0.93027 0.84796 0.98668 1.42670 1.03168 1.03564 1.91119 1.19052 0.83772 0.92568 1.41829 0.92764 1.25625 0.98109 0.99850 1.02342 1.69901 1.15721 1.18409 1.59416 0.85304 0.79231 0.78366 0.78247 1.20211 1.22147 1.17210 1.22105 0.95523 0.98311 0.98078 1.20581 0.92319 0.97781 0.95760 1.20981 1.00972 0.91266 1.04170 0.89146 0.89423 0.89406 0.79289 0.74397 0.91391 0.91409 0.90177 0.90070 0.95415 0.95514 0.79814 0.93234 0.84087 0.89143 0.88437 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.37 9.65 71.24 0.69 0.31 16 2 C -0.11 -1.21 5.91 -19.69 -0.12 -1.32 16 3 C 0.09 1.30 10.86 84.83 0.92 2.22 16 4 N -0.48 -9.89 9.54 -184.90 -1.76 -11.65 16 5 C 0.05 1.15 6.75 41.89 0.28 1.43 16 6 C 0.56 16.17 7.81 86.88 0.68 16.85 16 7 O -0.57 -19.81 16.32 -3.76 -0.06 -19.88 16 8 N -0.70 -17.89 5.55 -465.65 -2.58 -20.47 16 9 C 0.13 3.49 5.67 86.38 0.49 3.98 16 10 C -0.12 -3.47 5.44 30.59 0.17 -3.31 16 11 C 0.16 5.96 6.26 86.38 0.54 6.50 16 12 N -0.76 -36.18 5.41 -343.44 -1.86 -38.03 16 13 C -0.24 -14.20 10.47 84.03 0.88 -13.32 16 14 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16 15 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 16 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 17 Si 0.96 45.70 27.74 68.60 1.90 47.60 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 21 C -0.12 -2.39 9.34 22.61 0.21 -2.18 16 22 C -0.06 -0.76 5.91 -19.69 -0.12 -0.88 16 23 C -0.12 -0.78 9.67 71.24 0.69 -0.09 16 24 H 0.09 0.15 8.14 -2.39 -0.02 0.14 16 25 H 0.09 0.10 8.09 -2.38 -0.02 0.08 16 26 H 0.09 0.10 6.06 -2.39 -0.01 0.08 16 27 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 28 H 0.42 9.30 7.80 -92.71 -0.72 8.57 16 29 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.03 1.05 8.14 -2.38 -0.02 1.04 16 35 H 0.37 16.35 5.53 -92.71 -0.51 15.84 16 36 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.14 2.89 7.64 -2.91 -0.02 2.86 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.10 0.25 6.07 -2.39 -0.01 0.24 16 40 H 0.07 0.52 8.10 -2.39 -0.02 0.50 16 Total: -1.00 -77.51 337.37 1.49 -76.03 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.24 Total: 23.77 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.78 Total: 6.58 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.90 Total: -134.10 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.88 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -77.51 1.49 -76.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162974976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.242 kcal (2) G-P(sol) polarization free energy of solvation -77.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds