Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38232 * 120.41815 * 2 1 4 4 N 1.31851 * 120.76522 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72445 * 359.70275 * 4 3 2 6 6 C 1.38181 * 120.76192 * 0.57900 * 5 4 3 7 7 C 1.50706 * 120.41839 * 179.70445 * 6 5 4 8 8 C 1.50698 * 109.47294 * 269.73124 * 7 6 5 9 9 O 1.21282 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99846 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46811 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46886 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47237 * 180.02562 * 13 12 11 15 15 C 1.36942 * 120.00447 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00066 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46984 * 119.99908 * 19 17 15 22 22 H 1.48496 * 109.47153 * 240.00015 * 19 17 15 23 23 C 1.38623 * 120.42216 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46958 * 269.98075 * 1 2 3 25 25 H 1.08999 * 109.47565 * 29.98056 * 1 2 3 26 26 H 1.08997 * 109.47265 * 149.98197 * 1 2 3 27 27 H 1.08002 * 119.61826 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.61768 * 180.31162 * 5 4 3 29 29 H 1.09001 * 109.46953 * 29.72566 * 7 6 5 30 30 H 1.09000 * 109.47318 * 149.72164 * 7 6 5 31 31 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47703 * 299.99475 * 11 10 8 33 33 H 1.09001 * 109.47464 * 60.00214 * 11 10 8 34 34 H 1.08992 * 109.47559 * 299.99823 * 12 11 10 35 35 H 1.08996 * 109.47261 * 60.00359 * 12 11 10 36 36 H 1.09001 * 109.47600 * 300.00455 * 13 12 11 37 37 H 1.09004 * 109.47006 * 60.00233 * 13 12 11 38 38 H 0.97006 * 119.99755 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99519 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.78930 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 0.0048 6 6 3.5948 -1.1469 -0.0009 7 6 4.4027 -2.4192 -0.0015 8 6 4.6715 -2.8429 -1.4224 9 8 4.2483 -2.1776 -2.3440 10 7 5.3813 -3.9617 -1.6692 11 6 5.6422 -4.3739 -3.0506 12 6 6.4625 -5.6655 -3.0511 13 6 6.7344 -6.0963 -4.4938 14 7 7.5193 -7.3332 -4.4944 15 6 7.8855 -7.9113 -5.6806 16 1 7.5953 -7.4555 -6.6156 17 6 8.6296 -9.0831 -5.6810 18 7 8.9838 -9.6383 -4.5414 19 14 9.1286 -9.8720 -7.2991 20 1 8.6105 -9.0574 -8.4275 21 1 10.6098 -9.9426 -7.3794 22 1 8.5627 -11.2427 -7.3767 23 6 2.2089 -1.1954 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6674 2.1277 -0.0004 28 1 5.3046 0.1287 0.0093 29 1 5.3490 -2.2488 0.5120 30 1 3.8464 -3.2031 0.5125 31 1 5.7195 -4.4940 -0.9321 32 1 4.6958 -4.5440 -3.5639 33 1 6.1987 -3.5903 -3.5647 34 1 7.4089 -5.4951 -2.5380 35 1 5.9064 -6.4493 -2.5369 36 1 5.7878 -6.2668 -5.0067 37 1 7.2903 -5.3125 -5.0084 38 1 7.7803 -7.7424 -3.6545 39 1 9.5035 -10.4573 -4.5418 40 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163317932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -8.791423 kcal Electronic energy + Delta-G solvation = -19847.758293 eV Core-core repulsion = 16662.051478 eV Total energy + Delta-G solvation = -3185.706815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73986 -39.48447 -36.10909 -34.37952 -33.91096 -33.81573 -32.01316 -29.86398 -28.25884 -27.58139 -25.17528 -23.52692 -22.73470 -21.71532 -21.24161 -20.17471 -17.41643 -17.20220 -16.98893 -16.83049 -16.15024 -15.69173 -14.76612 -14.59208 -14.54307 -14.39760 -13.75761 -13.53539 -13.31619 -13.28925 -13.04863 -12.92560 -12.89940 -12.74418 -12.20814 -11.76418 -11.64184 -10.99292 -10.95122 -10.80267 -10.65379 -10.17865 -10.03775 -9.79871 -9.71767 -9.67680 -9.10946 -9.05240 -8.90672 -6.95811 -5.79571 -3.08545 0.81976 1.03319 2.51537 3.06484 3.42185 3.48013 3.50274 3.59634 4.10605 4.35349 4.42501 4.57139 4.67575 4.69130 4.71727 4.82393 4.98463 5.11498 5.13181 5.21035 5.27547 5.38078 5.49795 5.55335 5.59363 5.65577 5.90592 5.95145 5.97018 6.03042 6.15930 6.29023 6.40255 6.44732 6.75999 6.80169 7.40067 7.68758 7.73410 8.11634 8.39477 9.50683 10.07481 10.42117 11.43489 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050718 B = 0.002189 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.935892 B =12789.708748 C =12882.709124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.110 4.110 7 C -0.100 4.100 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.727 5.727 11 C 0.122 3.878 12 C -0.137 4.137 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.072 0.928 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.063 4.063 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 17.978 14.968 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.063 4.063 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.113 4.113 7 C -0.140 4.140 8 C 0.296 3.704 9 O -0.411 6.411 10 N -0.379 5.379 11 C -0.001 4.001 12 C -0.175 4.175 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.089 4.089 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.502 19.243 14.085 27.910 hybrid contribution 0.208 -1.834 -0.277 1.867 sum -14.294 17.408 13.808 26.420 Atomic orbital electron populations 1.20719 0.90167 1.03297 1.02503 1.20902 0.97602 0.94076 1.01373 1.22654 0.89994 0.97435 0.96201 1.67671 1.08370 1.31068 1.11697 1.22576 1.00184 0.87094 0.95223 1.20283 0.94282 0.95444 1.01264 1.20616 1.01958 0.96114 0.95345 1.20448 0.78232 0.80718 0.90994 1.90745 1.50704 1.53423 1.46274 1.46082 1.55652 1.26444 1.09738 1.21366 1.00174 0.96838 0.81768 1.21943 0.99855 0.95567 1.00180 1.20523 0.94801 0.89723 0.92175 1.42349 1.63694 1.25266 1.06523 1.19294 1.27160 1.04451 0.86137 0.91029 1.24763 1.01101 0.98309 0.96981 1.69672 1.43222 1.21475 1.23945 0.86088 0.77964 0.79096 0.82890 1.20498 1.21828 1.21829 1.21329 0.93267 0.98324 0.96014 0.90919 0.91112 0.91249 0.82959 0.83008 0.87418 0.87626 0.76442 0.91402 0.91353 0.91254 0.91293 0.96068 0.96046 0.78303 0.93548 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 36.00 0.36 -0.27 16 2 C -0.14 -1.20 5.90 -104.48 -0.62 -1.81 16 3 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 4 N -0.48 -5.61 10.36 -13.25 -0.14 -5.74 16 5 C 0.11 1.13 10.86 -17.55 -0.19 0.94 16 6 C -0.11 -1.07 4.39 -104.48 -0.46 -1.52 16 7 C -0.10 -0.75 5.86 -29.03 -0.17 -0.92 16 8 C 0.51 5.86 7.82 -10.99 -0.09 5.77 16 9 O -0.54 -8.62 16.03 5.56 0.09 -8.53 16 10 N -0.73 -7.65 5.56 -60.29 -0.33 -7.99 16 11 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 12 C -0.14 -2.04 5.44 -26.73 -0.15 -2.18 16 13 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 14 N -0.73 -18.60 5.60 -59.91 -0.34 -18.94 16 15 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 19 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.06 -0.58 9.55 -39.28 -0.37 -0.96 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.11 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.40 3.08 8.47 -40.82 -0.35 2.73 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -35.42 345.45 -8.09 -43.51 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.11 Total: 5.57 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.17 Total: -3.04 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.08 Total: -60.17 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.42 -8.09 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163317932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.719 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds