Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38232 * 120.41815 * 2 1 4 4 N 1.31851 * 120.76522 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72445 * 359.70275 * 4 3 2 6 6 C 1.38181 * 120.76192 * 0.57900 * 5 4 3 7 7 C 1.50706 * 120.41839 * 179.70445 * 6 5 4 8 8 C 1.50698 * 109.47294 * 269.73124 * 7 6 5 9 9 O 1.21282 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99846 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46811 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46886 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47237 * 180.02562 * 13 12 11 15 15 C 1.36942 * 120.00447 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00066 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46984 * 119.99908 * 19 17 15 22 22 H 1.48496 * 109.47153 * 240.00015 * 19 17 15 23 23 C 1.38623 * 120.42216 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46958 * 269.98075 * 1 2 3 25 25 H 1.08999 * 109.47565 * 29.98056 * 1 2 3 26 26 H 1.08997 * 109.47265 * 149.98197 * 1 2 3 27 27 H 1.08002 * 119.61826 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.61768 * 180.31162 * 5 4 3 29 29 H 1.09001 * 109.46953 * 29.72566 * 7 6 5 30 30 H 1.09000 * 109.47318 * 149.72164 * 7 6 5 31 31 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47703 * 299.99475 * 11 10 8 33 33 H 1.09001 * 109.47464 * 60.00214 * 11 10 8 34 34 H 1.08992 * 109.47559 * 299.99823 * 12 11 10 35 35 H 1.08996 * 109.47261 * 60.00359 * 12 11 10 36 36 H 1.09001 * 109.47600 * 300.00455 * 13 12 11 37 37 H 1.09004 * 109.47006 * 60.00233 * 13 12 11 38 38 H 0.97006 * 119.99755 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99519 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.78930 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 0.0048 6 6 3.5948 -1.1469 -0.0009 7 6 4.4027 -2.4192 -0.0015 8 6 4.6715 -2.8429 -1.4224 9 8 4.2483 -2.1776 -2.3440 10 7 5.3813 -3.9617 -1.6692 11 6 5.6422 -4.3739 -3.0506 12 6 6.4625 -5.6655 -3.0511 13 6 6.7344 -6.0963 -4.4938 14 7 7.5193 -7.3332 -4.4944 15 6 7.8855 -7.9113 -5.6806 16 1 7.5953 -7.4555 -6.6156 17 6 8.6296 -9.0831 -5.6810 18 7 8.9838 -9.6383 -4.5414 19 14 9.1286 -9.8720 -7.2991 20 1 8.6105 -9.0574 -8.4275 21 1 10.6098 -9.9426 -7.3794 22 1 8.5627 -11.2427 -7.3767 23 6 2.2089 -1.1954 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6674 2.1277 -0.0004 28 1 5.3046 0.1287 0.0093 29 1 5.3490 -2.2488 0.5120 30 1 3.8464 -3.2031 0.5125 31 1 5.7195 -4.4940 -0.9321 32 1 4.6958 -4.5440 -3.5639 33 1 6.1987 -3.5903 -3.5647 34 1 7.4089 -5.4951 -2.5380 35 1 5.9064 -6.4493 -2.5369 36 1 5.7878 -6.2668 -5.0067 37 1 7.2903 -5.3125 -5.0084 38 1 7.7803 -7.7424 -3.6545 39 1 9.5035 -10.4573 -4.5418 40 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163317932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -33.956835 kcal Electronic energy + Delta-G solvation = -19848.849547 eV Core-core repulsion = 16662.051478 eV Total energy + Delta-G solvation = -3186.798069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47106 -40.38220 -37.53053 -35.90598 -34.59641 -34.48526 -33.72409 -31.42506 -29.14597 -28.15959 -26.77861 -24.60269 -24.03158 -22.62071 -22.50329 -21.11000 -19.19869 -18.03186 -17.84694 -17.68557 -17.21905 -16.77501 -16.50709 -15.65464 -15.42194 -15.33536 -15.20022 -14.90292 -14.42061 -14.15840 -14.00717 -13.96431 -13.52013 -13.32559 -13.26102 -13.06646 -12.84162 -12.59476 -12.42555 -12.30265 -12.04782 -12.04600 -11.80150 -11.09060 -10.96778 -10.50299 -10.40715 -10.09889 -9.72881 -9.02983 -7.97961 -5.27061 0.13099 0.34303 1.47419 1.47865 1.58290 1.64403 2.19296 2.55383 2.87506 3.36003 3.47509 3.71030 3.77115 3.85068 3.97628 4.06632 4.07560 4.09333 4.26762 4.29778 4.43716 4.49265 4.64072 4.72516 4.73765 4.79626 4.83211 4.88002 4.92927 5.19522 5.25787 5.28504 5.31338 5.33789 5.44107 5.48161 5.80444 6.25257 6.57848 7.02519 7.27082 7.31635 8.06160 8.30123 9.25643 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050718 B = 0.002189 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.935892 B =12789.708748 C =12882.709124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.511 5.511 5 C 0.084 3.916 6 C -0.118 4.118 7 C -0.089 4.089 8 C 0.510 3.490 9 O -0.586 6.586 10 N -0.716 5.716 11 C 0.133 3.867 12 C -0.117 4.117 13 C 0.151 3.849 14 N -0.747 5.747 15 C -0.249 4.249 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.975 3.025 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.077 4.077 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.418 0.582 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 17.945 15.659 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.080 4.080 4 N -0.219 5.219 5 C -0.073 4.073 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.298 3.702 9 O -0.466 6.466 10 N -0.369 5.369 11 C 0.009 3.991 12 C -0.155 4.155 13 C 0.024 3.976 14 N -0.390 5.390 15 C -0.380 4.380 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.103 4.103 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.178 0.822 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.256 0.744 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.208 0.792 39 H 0.061 0.939 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.336 19.223 14.800 28.701 hybrid contribution 0.408 -1.757 -0.488 1.868 sum -14.928 17.466 14.312 27.069 Atomic orbital electron populations 1.20774 0.88079 1.03926 1.03645 1.21252 0.99180 0.93655 1.00122 1.23063 0.89718 0.98828 0.96346 1.67639 1.09516 1.31985 1.12761 1.22850 1.00844 0.87544 0.96053 1.20515 0.94844 0.95880 1.00838 1.20667 1.03585 0.95914 0.92759 1.21118 0.77007 0.79909 0.92142 1.90731 1.52770 1.54951 1.48195 1.45918 1.55321 1.26528 1.09099 1.21045 0.99192 0.95565 0.83341 1.21693 1.00561 0.96388 0.96896 1.20691 0.93748 0.87610 0.95575 1.42550 1.64246 1.26769 1.05419 1.19673 1.26538 1.04551 0.87274 0.90800 1.25591 1.01771 0.99176 1.00284 1.69810 1.44244 1.21868 1.25910 0.85056 0.77251 0.77972 0.79368 1.19218 1.21869 1.21809 1.21693 0.93467 0.99310 0.95837 0.89397 0.90213 0.90890 0.81142 0.82185 0.84586 0.84511 0.74437 0.92278 0.92410 0.90621 0.90552 0.96131 0.96210 0.79161 0.93869 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.24 0.72 -0.31 16 2 C -0.14 -2.28 5.90 -19.77 -0.12 -2.40 16 3 C 0.08 1.46 10.86 84.69 0.92 2.38 16 4 N -0.51 -11.97 10.36 -195.84 -2.03 -14.00 16 5 C 0.08 1.75 10.86 84.67 0.92 2.67 16 6 C -0.12 -2.13 4.39 -19.77 -0.09 -2.22 16 7 C -0.09 -1.10 5.86 29.10 0.17 -0.93 16 8 C 0.51 10.83 7.82 87.66 0.69 11.52 16 9 O -0.59 -18.64 16.03 -3.04 -0.05 -18.69 16 10 N -0.72 -13.55 5.56 -463.06 -2.57 -16.12 16 11 C 0.13 3.36 5.67 86.38 0.49 3.85 16 12 C -0.12 -3.31 5.44 30.60 0.17 -3.14 16 13 C 0.15 5.88 6.26 86.38 0.54 6.42 16 14 N -0.75 -37.70 5.60 -343.45 -1.92 -39.63 16 15 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 18 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 19 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 C -0.08 -1.31 9.55 22.47 0.21 -1.09 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 26 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.14 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.14 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.42 5.15 8.47 -92.71 -0.79 4.36 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.38 19.77 7.67 -92.70 -0.71 19.06 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.75 345.45 1.21 -75.55 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.45 Total: 23.47 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.93 Total: -0.29 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -6.24 Total: -128.14 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.75 1.21 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163317932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.589 kcal (2) G-P(sol) polarization free energy of solvation -76.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds