Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00178 * 2 1 4 4 C 1.53008 * 109.57425 * 300.15333 * 3 2 1 5 5 C 1.53121 * 109.52539 * 179.97438 * 3 2 1 6 6 C 1.53037 * 109.27677 * 297.74701 * 5 3 2 7 7 N 1.46848 * 109.52552 * 300.82107 * 6 5 3 8 8 C 1.38818 * 110.99893 * 185.83768 * 7 6 5 9 9 C 1.39962 * 119.97301 * 359.97438 * 8 7 6 10 10 N 1.32133 * 120.31493 * 180.02562 * 9 8 7 11 11 C 1.31926 * 120.27603 * 0.02562 * 10 9 8 12 12 C 1.40679 * 119.93095 * 359.97438 * 11 10 9 13 13 C 1.41277 * 120.15158 * 180.27831 * 12 11 10 14 14 H 1.07995 * 120.00128 * 353.40262 * 13 12 11 15 15 C 1.40062 * 119.99499 * 173.40443 * 13 12 11 16 16 N 1.30726 * 120.00158 * 6.23053 * 15 13 12 17 17 Si 1.86800 * 119.99494 * 186.23906 * 15 13 12 18 18 H 1.48495 * 109.47315 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47238 * 119.99793 * 17 15 13 20 20 H 1.48504 * 109.46828 * 239.99433 * 17 15 13 21 21 N 1.32248 * 119.96881 * 179.97438 * 8 7 6 22 22 C 1.46846 * 111.19605 * 61.73708 * 7 6 5 23 23 C 1.53029 * 109.52797 * 298.26251 * 22 7 6 24 24 H 1.08997 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46851 * 300.00765 * 1 2 3 26 26 H 1.09004 * 109.46753 * 60.00309 * 1 2 3 27 27 H 1.09002 * 109.47035 * 299.84645 * 4 3 2 28 28 H 1.09006 * 109.46526 * 59.84081 * 4 3 2 29 29 H 1.08997 * 109.46983 * 179.84300 * 4 3 2 30 30 H 1.09000 * 109.50618 * 177.80665 * 5 3 2 31 31 H 1.09007 * 109.53455 * 57.70681 * 5 3 2 32 32 H 1.09000 * 109.46077 * 180.80165 * 6 5 3 33 33 H 1.09010 * 109.46341 * 60.83438 * 6 5 3 34 34 H 1.07995 * 119.84090 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.03076 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99860 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46198 * 58.28126 * 22 7 6 38 38 H 1.09009 * 109.46005 * 178.24039 * 22 7 6 39 39 H 1.09007 * 109.50306 * 299.24106 * 23 22 7 40 40 H 1.09000 * 109.53991 * 179.14346 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5572 2.0683 -1.2466 5 6 3.5368 1.1859 0.0006 6 6 3.9875 0.4762 1.2794 7 7 3.5380 1.2410 2.4497 8 6 4.0410 0.6962 3.6232 9 6 4.8602 -0.4375 3.5728 10 7 5.3423 -0.9620 4.6857 11 6 5.0552 -0.4216 5.8545 12 6 4.2329 0.7181 5.9178 13 6 3.9272 1.3041 7.1665 14 1 4.2350 0.8184 8.0807 15 6 3.2250 2.5148 7.2187 16 7 2.7465 3.0407 6.1217 17 14 2.9725 3.3781 8.8558 18 1 3.6062 2.5827 9.9379 19 1 3.5915 4.7269 8.8049 20 1 1.5183 3.5108 9.1263 21 7 3.7458 1.2490 4.7878 22 6 2.0729 1.3287 2.4958 23 6 1.5650 2.0638 1.2534 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8791 1.5307 -2.1385 28 1 0.4705 2.1528 -1.2457 29 1 1.9993 3.0646 -1.2434 30 1 3.9798 2.1811 -0.0387 31 1 3.8577 0.6101 -0.8675 32 1 5.0749 0.4022 1.2897 33 1 3.5552 -0.5240 1.3114 34 1 5.0986 -0.8863 2.6199 35 1 5.4517 -0.8533 6.7615 36 1 2.2605 3.8794 6.1578 37 1 1.6496 0.3246 2.5221 38 1 1.7697 1.8739 3.3898 39 1 1.9770 3.0728 1.2338 40 1 0.4766 2.1157 1.2799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163947870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 7.879220 kcal Electronic energy + Delta-G solvation = -22361.144858 eV Core-core repulsion = 19176.160936 eV Total energy + Delta-G solvation = -3184.983922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11741 -38.80071 -36.47374 -33.99670 -33.10571 -31.63874 -30.71042 -29.64262 -27.59640 -26.63100 -25.85811 -23.31729 -22.60434 -21.56154 -20.67951 -19.38830 -17.60158 -16.49015 -15.93802 -15.58686 -15.41888 -15.19005 -14.87142 -14.78299 -14.18371 -13.55451 -13.48157 -13.20356 -12.92338 -12.53882 -12.42680 -12.07370 -11.86271 -11.63475 -11.55936 -11.35891 -11.31778 -11.05593 -10.87851 -10.69043 -10.59787 -10.28037 -10.00685 -9.80067 -9.46084 -9.41022 -9.27507 -8.37158 -7.46330 -7.00818 -6.44380 -4.67889 2.54475 2.97837 3.03439 3.07913 3.22129 3.84017 3.85559 4.36202 4.67681 4.77684 4.86199 4.99923 5.30771 5.40527 5.44495 5.48968 5.61554 5.67030 5.70423 5.75314 5.82218 5.89395 5.92666 5.98294 6.06229 6.12796 6.17896 6.28363 6.37156 6.50977 6.52130 6.61462 6.84089 6.99821 7.08624 7.33465 7.52502 7.63600 7.95618 8.10852 8.50700 8.73365 9.33613 9.91401 10.15217 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.005400 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.565902 B = 5184.204427 C = 5993.594775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.375 6.375 3 C 0.110 3.890 4 C -0.175 4.175 5 C -0.098 4.098 6 C 0.061 3.939 7 N -0.471 5.471 8 C 0.292 3.708 9 C -0.158 4.158 10 N -0.417 5.417 11 C -0.088 4.088 12 C 0.227 3.773 13 C -0.413 4.413 14 H 0.091 0.909 15 C 0.067 3.933 16 N -0.705 5.705 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.273 1.273 21 N -0.466 5.466 22 C 0.076 3.924 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.275 0.725 37 H 0.033 0.967 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 1.057 -10.515 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.136 4.136 6 C -0.067 4.067 7 N -0.190 5.190 8 C 0.050 3.950 9 C -0.319 4.319 10 N -0.128 5.128 11 C -0.258 4.258 12 C 0.100 3.900 13 C -0.446 4.446 14 H 0.109 0.891 15 C -0.160 4.160 16 N -0.325 5.325 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.198 1.198 21 N -0.188 5.188 22 C -0.050 4.050 23 C -0.178 4.178 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.337 1.568 -10.720 12.077 hybrid contribution -0.584 0.038 0.698 0.911 sum -5.921 1.606 -10.021 11.750 Atomic orbital electron populations 1.22746 0.82060 1.02297 0.99999 1.87967 1.19077 1.27486 1.94923 1.21608 0.94201 0.83193 0.93915 1.22383 1.01590 1.01024 0.98207 1.21619 0.92150 1.02064 0.97788 1.22090 1.00492 0.95464 0.88678 1.58267 1.10235 1.49707 1.00742 1.20665 0.94045 0.89336 0.90920 1.22643 1.12292 1.00349 0.96622 1.67560 1.17698 1.28863 0.98705 1.23039 1.06960 1.01094 0.94686 1.19239 0.88976 0.89626 0.92186 1.19656 1.28680 1.03917 0.92300 0.89097 1.26135 0.94272 0.97524 0.98066 1.70111 1.19884 1.14526 1.28015 0.86216 0.78825 0.79612 0.81925 1.18183 1.19706 1.19786 1.69180 1.25992 1.28347 0.95291 1.21924 0.85207 0.99235 0.98679 1.22228 1.00424 1.00549 0.94593 0.90102 0.93724 0.94146 0.91974 0.92380 0.91382 0.89854 0.90822 0.90253 0.93234 0.85494 0.85123 0.91408 0.94879 0.88122 0.90099 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.22 101.05 1.03 1.32 16 2 O -0.38 -5.42 9.21 -35.23 -0.32 -5.74 16 3 C 0.11 1.47 0.72 -90.49 -0.06 1.41 16 4 C -0.17 -1.84 8.27 37.16 0.31 -1.53 16 5 C -0.10 -1.36 5.11 -26.65 -0.14 -1.50 16 6 C 0.06 1.05 4.00 -3.83 -0.02 1.04 16 7 N -0.47 -9.83 4.73 -173.06 -0.82 -10.65 16 8 C 0.29 7.27 6.45 -155.02 -1.00 6.27 16 9 C -0.16 -3.89 10.00 -16.78 -0.17 -4.05 16 10 N -0.42 -10.79 10.47 -12.11 -0.13 -10.91 16 11 C -0.09 -2.28 10.97 -16.59 -0.18 -2.46 16 12 C 0.23 6.24 6.54 -84.84 -0.55 5.68 16 13 C -0.41 -10.73 9.15 -37.74 -0.35 -11.08 16 14 H 0.09 2.18 7.85 -52.49 -0.41 1.77 16 15 C 0.07 1.64 5.49 -17.34 -0.10 1.54 16 16 N -0.70 -18.02 11.51 55.55 0.64 -17.38 16 17 Si 0.91 17.91 29.56 -169.99 -5.03 12.88 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 N -0.47 -12.77 7.35 -10.14 -0.07 -12.84 16 22 C 0.08 1.47 5.21 -3.84 -0.02 1.45 16 23 C -0.14 -2.08 4.59 -26.66 -0.12 -2.20 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.04 0.39 6.42 -51.93 -0.33 0.06 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.36 6.96 -51.93 -0.36 1.00 16 33 H 0.05 0.91 7.34 -51.92 -0.38 0.53 16 34 H 0.13 2.78 5.78 -52.49 -0.30 2.48 16 35 H 0.13 3.08 8.06 -52.49 -0.42 2.66 16 36 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 37 H 0.03 0.67 7.76 -51.93 -0.40 0.26 16 38 H 0.10 2.25 7.59 -51.92 -0.39 1.85 16 39 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 40 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -30.00 315.11 -8.03 -38.03 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.69 Total: 5.98 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.36 Total: -4.12 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.38 Total: -51.78 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.32 Total: -5.74 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.00 -8.03 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163947870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.908 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds