Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00178 * 2 1 4 4 C 1.53008 * 109.57425 * 300.15333 * 3 2 1 5 5 C 1.53121 * 109.52539 * 179.97438 * 3 2 1 6 6 C 1.53037 * 109.27677 * 297.74701 * 5 3 2 7 7 N 1.46848 * 109.52552 * 300.82107 * 6 5 3 8 8 C 1.38818 * 110.99893 * 185.83768 * 7 6 5 9 9 C 1.39962 * 119.97301 * 359.97438 * 8 7 6 10 10 N 1.32133 * 120.31493 * 180.02562 * 9 8 7 11 11 C 1.31926 * 120.27603 * 0.02562 * 10 9 8 12 12 C 1.40679 * 119.93095 * 359.97438 * 11 10 9 13 13 C 1.41277 * 120.15158 * 180.27831 * 12 11 10 14 14 H 1.07995 * 120.00128 * 353.40262 * 13 12 11 15 15 C 1.40062 * 119.99499 * 173.40443 * 13 12 11 16 16 N 1.30726 * 120.00158 * 6.23053 * 15 13 12 17 17 Si 1.86800 * 119.99494 * 186.23906 * 15 13 12 18 18 H 1.48495 * 109.47315 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47238 * 119.99793 * 17 15 13 20 20 H 1.48504 * 109.46828 * 239.99433 * 17 15 13 21 21 N 1.32248 * 119.96881 * 179.97438 * 8 7 6 22 22 C 1.46846 * 111.19605 * 61.73708 * 7 6 5 23 23 C 1.53029 * 109.52797 * 298.26251 * 22 7 6 24 24 H 1.08997 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46851 * 300.00765 * 1 2 3 26 26 H 1.09004 * 109.46753 * 60.00309 * 1 2 3 27 27 H 1.09002 * 109.47035 * 299.84645 * 4 3 2 28 28 H 1.09006 * 109.46526 * 59.84081 * 4 3 2 29 29 H 1.08997 * 109.46983 * 179.84300 * 4 3 2 30 30 H 1.09000 * 109.50618 * 177.80665 * 5 3 2 31 31 H 1.09007 * 109.53455 * 57.70681 * 5 3 2 32 32 H 1.09000 * 109.46077 * 180.80165 * 6 5 3 33 33 H 1.09010 * 109.46341 * 60.83438 * 6 5 3 34 34 H 1.07995 * 119.84090 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.03076 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99860 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46198 * 58.28126 * 22 7 6 38 38 H 1.09009 * 109.46005 * 178.24039 * 22 7 6 39 39 H 1.09007 * 109.50306 * 299.24106 * 23 22 7 40 40 H 1.09000 * 109.53991 * 179.14346 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5572 2.0683 -1.2466 5 6 3.5368 1.1859 0.0006 6 6 3.9875 0.4762 1.2794 7 7 3.5380 1.2410 2.4497 8 6 4.0410 0.6962 3.6232 9 6 4.8602 -0.4375 3.5728 10 7 5.3423 -0.9620 4.6857 11 6 5.0552 -0.4216 5.8545 12 6 4.2329 0.7181 5.9178 13 6 3.9272 1.3041 7.1665 14 1 4.2350 0.8184 8.0807 15 6 3.2250 2.5148 7.2187 16 7 2.7465 3.0407 6.1217 17 14 2.9725 3.3781 8.8558 18 1 3.6062 2.5827 9.9379 19 1 3.5915 4.7269 8.8049 20 1 1.5183 3.5108 9.1263 21 7 3.7458 1.2490 4.7878 22 6 2.0729 1.3287 2.4958 23 6 1.5650 2.0638 1.2534 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8791 1.5307 -2.1385 28 1 0.4705 2.1528 -1.2457 29 1 1.9993 3.0646 -1.2434 30 1 3.9798 2.1811 -0.0387 31 1 3.8577 0.6101 -0.8675 32 1 5.0749 0.4022 1.2897 33 1 3.5552 -0.5240 1.3114 34 1 5.0986 -0.8863 2.6199 35 1 5.4517 -0.8533 6.7615 36 1 2.2605 3.8794 6.1578 37 1 1.6496 0.3246 2.5221 38 1 1.7697 1.8739 3.3898 39 1 1.9770 3.0728 1.2338 40 1 0.4766 2.1157 1.2799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163947870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = -11.917623 kcal Electronic energy + Delta-G solvation = -22362.003313 eV Core-core repulsion = 19176.160936 eV Total energy + Delta-G solvation = -3185.842377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61403 -40.38326 -37.94605 -35.89925 -34.46889 -33.43734 -32.10121 -31.30369 -28.90225 -27.73586 -27.62669 -24.92556 -24.11013 -23.28777 -22.29318 -20.58859 -19.46792 -18.19134 -17.46904 -17.22686 -16.69777 -16.59207 -16.35188 -16.26438 -15.71443 -15.06342 -14.97075 -14.58657 -14.31162 -13.89569 -13.57907 -13.42462 -13.30870 -13.08362 -12.98533 -12.85283 -12.68830 -12.57148 -12.18430 -12.13339 -12.04049 -11.76397 -11.69176 -11.41639 -11.26920 -11.02983 -10.40321 -10.23573 -9.41744 -8.84432 -8.33366 -6.67536 0.62591 1.10848 1.41553 1.52575 1.58013 2.19497 2.65526 2.80251 2.93291 3.67785 3.72716 3.78313 3.91270 4.05683 4.16968 4.28978 4.32650 4.41116 4.47266 4.48694 4.56690 4.60106 4.68223 4.71147 4.79680 4.84807 4.88472 4.96873 4.98887 5.07765 5.11836 5.17950 5.19085 5.26354 5.31243 5.62409 5.94134 6.11059 6.22575 6.35605 6.58283 6.77379 7.34687 7.94743 8.31340 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.005400 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.565902 B = 5184.204427 C = 5993.594775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.110 3.890 4 C -0.167 4.167 5 C -0.094 4.094 6 C 0.060 3.940 7 N -0.475 5.475 8 C 0.284 3.716 9 C -0.170 4.170 10 N -0.426 5.426 11 C -0.110 4.110 12 C 0.195 3.805 13 C -0.435 4.435 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.737 5.737 17 Si 0.994 3.006 18 H -0.250 1.250 19 H -0.267 1.267 20 H -0.264 1.264 21 N -0.494 5.494 22 C 0.086 3.914 23 C -0.131 4.131 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.284 0.716 37 H 0.017 0.983 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 2.092 -11.547 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.318 6.318 3 C 0.071 3.929 4 C -0.224 4.224 5 C -0.132 4.132 6 C -0.067 4.067 7 N -0.193 5.193 8 C 0.042 3.958 9 C -0.331 4.331 10 N -0.138 5.138 11 C -0.279 4.279 12 C 0.068 3.932 13 C -0.466 4.466 14 H 0.121 0.879 15 C -0.202 4.202 16 N -0.357 5.357 17 Si 0.814 3.186 18 H -0.173 1.173 19 H -0.192 1.192 20 H -0.189 1.189 21 N -0.217 5.217 22 C -0.041 4.041 23 C -0.169 4.169 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.111 2.584 -11.776 13.516 hybrid contribution -0.366 -0.307 0.963 1.075 sum -6.477 2.277 -10.813 12.808 Atomic orbital electron populations 1.22905 0.80684 1.03229 1.00758 1.87939 1.20689 1.28070 1.95066 1.21632 0.93775 0.83134 0.94319 1.22306 1.02402 1.01087 0.96624 1.21656 0.92806 1.02430 0.96264 1.22195 1.00425 0.95131 0.88930 1.58350 1.10906 1.49713 1.00339 1.21104 0.93807 0.89237 0.91670 1.23040 1.12284 1.00529 0.97211 1.67563 1.17959 1.29164 0.99074 1.23258 1.07750 1.01455 0.95413 1.19715 0.89858 0.90527 0.93100 1.20102 1.29174 1.04976 0.92359 0.87875 1.27123 0.93257 0.97614 1.02206 1.70201 1.19882 1.15089 1.30565 0.84969 0.79007 0.78072 0.76575 1.17298 1.19200 1.18902 1.69186 1.27028 1.29405 0.96092 1.21778 0.84315 0.98373 0.99618 1.22198 1.01363 1.00080 0.93258 0.89288 0.94404 0.91808 0.90849 0.91254 0.90356 0.88975 0.88445 0.90287 0.94352 0.83221 0.83580 0.90566 0.96443 0.91885 0.89939 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.22 113.37 1.16 1.58 16 2 O -0.40 -10.76 9.21 -148.98 -1.37 -12.13 16 3 C 0.11 2.70 0.72 -10.71 -0.01 2.70 16 4 C -0.17 -2.89 8.27 71.98 0.59 -2.30 16 5 C -0.09 -2.40 5.11 30.65 0.16 -2.24 16 6 C 0.06 2.06 4.00 86.33 0.35 2.41 16 7 N -0.47 -20.16 4.73 -701.45 -3.31 -23.48 16 8 C 0.28 14.61 6.45 133.37 0.86 15.47 16 9 C -0.17 -8.51 10.00 85.07 0.85 -7.66 16 10 N -0.43 -22.57 10.47 -192.24 -2.01 -24.58 16 11 C -0.11 -5.88 10.97 85.28 0.94 -4.94 16 12 C 0.20 11.08 6.54 40.15 0.26 11.34 16 13 C -0.43 -23.01 9.15 23.46 0.21 -22.80 16 14 H 0.10 4.99 7.85 -2.91 -0.02 4.97 16 15 C 0.02 1.08 5.49 85.30 0.47 1.55 16 16 N -0.74 -38.40 11.51 21.84 0.25 -38.15 16 17 Si 0.99 36.38 29.56 68.60 2.03 38.41 16 18 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 19 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 21 N -0.49 -28.13 7.35 -186.00 -1.37 -29.49 16 22 C 0.09 3.40 5.21 86.32 0.45 3.84 16 23 C -0.13 -3.76 4.59 30.64 0.14 -3.62 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 0.83 6.38 -2.39 -0.02 0.81 16 26 H 0.06 1.02 6.42 -2.38 -0.02 1.01 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.06 6.54 -2.38 -0.02 1.04 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.08 2.67 6.96 -2.39 -0.02 2.65 16 33 H 0.04 1.40 7.34 -2.38 -0.02 1.38 16 34 H 0.15 6.62 5.78 -2.91 -0.02 6.61 16 35 H 0.15 7.08 8.06 -2.91 -0.02 7.06 16 36 H 0.28 13.23 8.29 -92.71 -0.77 12.46 16 37 H 0.02 0.73 7.76 -2.39 -0.02 0.71 16 38 H 0.06 2.96 7.59 -2.38 -0.02 2.94 16 39 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.08 2.12 6.44 -2.39 -0.02 2.11 16 Total: -1.00 -66.86 315.11 1.68 -65.17 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.04 Total: 28.92 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 6.43 Total: -4.67 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -6.44 Total: -115.70 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.37 Total: -12.13 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -66.86 1.68 -65.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163947870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.257 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds