Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35545 * 117.00268 * 2 1 4 4 N 1.33032 * 120.46545 * 359.96854 * 3 2 1 5 5 C 1.31742 * 120.90979 * 180.02562 * 4 3 2 6 6 N 1.31752 * 121.89350 * 359.71579 * 5 4 3 7 7 C 1.33121 * 120.83091 * 0.58071 * 6 5 4 8 8 N 1.38612 * 120.49383 * 179.71099 * 7 6 5 9 9 C 1.46841 * 111.00219 * 62.42106 * 8 7 6 10 10 C 1.53035 * 109.52454 * 174.15786 * 9 8 7 11 11 C 1.53120 * 109.27595 * 59.17989 * 10 9 8 12 12 C 1.53113 * 109.16177 * 302.34574 * 11 10 9 13 13 H 1.08999 * 109.50530 * 297.71665 * 12 11 10 14 14 C 1.50699 * 109.53659 * 177.61713 * 12 11 10 15 15 H 1.08004 * 119.99896 * 240.09472 * 14 12 11 16 16 C 1.37876 * 120.00158 * 60.09906 * 14 12 11 17 17 N 1.31512 * 119.99719 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00130 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47093 * 119.99612 * 18 16 14 21 21 H 1.48498 * 109.47328 * 239.99826 * 18 16 14 22 22 C 1.46845 * 110.99800 * 298.21152 * 8 7 6 23 23 C 1.38883 * 120.46238 * 179.97438 * 3 2 1 24 24 C 1.50697 * 120.85809 * 359.97438 * 23 3 2 25 25 H 1.08999 * 109.47595 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47139 * 300.00571 * 1 2 3 27 27 H 1.09003 * 109.46781 * 60.00236 * 1 2 3 28 28 H 1.08006 * 119.05097 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.46656 * 294.17641 * 9 8 7 30 30 H 1.09007 * 109.46334 * 54.14104 * 9 8 7 31 31 H 1.09002 * 109.50358 * 179.11915 * 10 9 8 32 32 H 1.09001 * 109.50262 * 299.23601 * 10 9 8 33 33 H 1.09005 * 109.52238 * 182.43856 * 11 10 9 34 34 H 1.08998 * 109.52248 * 62.25047 * 11 10 9 35 35 H 0.96998 * 119.99850 * 180.02562 * 17 16 14 36 36 H 1.08991 * 109.46743 * 65.82425 * 22 8 7 37 37 H 1.09004 * 109.45281 * 305.85140 * 22 8 7 38 38 H 1.09005 * 109.47100 * 274.41516 * 24 23 3 39 39 H 1.08994 * 109.47625 * 34.41507 * 24 23 3 40 40 H 1.09004 * 109.47497 * 154.41779 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3290 2.3293 -0.0006 5 6 1.9180 3.5077 -0.0011 6 7 3.2298 3.6302 0.0045 7 6 4.0154 2.5555 -0.0006 8 7 5.3948 2.6926 -0.0006 9 6 5.8563 3.3708 1.2172 10 6 7.3862 3.3748 1.2519 11 6 7.9181 4.0965 0.0106 12 6 7.3837 3.3995 -1.2436 13 1 7.7501 2.3734 -1.2737 14 6 7.8545 4.1381 -2.4699 15 1 7.1347 4.5609 -3.1552 16 6 9.2041 4.2740 -2.7171 17 7 10.0805 3.7594 -1.8824 18 14 9.7877 5.1901 -4.2368 19 1 8.6123 5.6705 -5.0070 20 1 10.6181 6.3509 -3.8266 21 1 10.5965 4.2779 -5.0847 22 6 5.8538 3.3948 -1.2059 23 6 3.4307 1.2915 0.0005 24 6 4.2803 0.0469 0.0017 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.3080 4.3989 -0.0012 29 1 5.4903 4.3975 1.2222 30 1 5.4745 2.8452 2.0926 31 1 7.7286 3.8920 2.1482 32 1 7.7527 2.3482 1.2611 33 1 9.0077 4.0639 0.0092 34 1 7.5838 5.1339 0.0212 35 1 11.0300 3.8553 -2.0562 36 1 5.4877 4.4213 -1.1897 37 1 5.4702 2.8864 -2.0905 38 1 4.4194 -0.2972 1.0266 39 1 3.7853 -0.7316 -0.5788 40 1 5.2509 0.2690 -0.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = 12.426335 kcal Electronic energy + Delta-G solvation = -21974.303605 eV Core-core repulsion = 18789.516860 eV Total energy + Delta-G solvation = -3184.786744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28646 -38.98608 -37.73777 -34.43367 -33.06281 -32.49899 -30.78984 -29.92651 -27.82744 -26.96525 -24.99041 -24.22911 -22.73817 -21.87380 -21.41874 -18.92296 -18.52392 -17.74415 -16.43171 -16.29758 -15.43000 -15.13398 -14.74218 -14.41404 -14.23362 -14.06328 -13.77808 -13.39265 -12.74970 -12.67045 -12.53484 -12.45506 -12.25092 -11.89234 -11.80120 -11.60512 -10.97075 -10.77922 -10.74888 -10.69649 -10.15094 -10.04490 -9.77280 -9.52280 -9.45663 -9.05119 -8.79744 -8.66802 -8.35421 -8.10293 -5.99344 -4.05265 1.02197 1.21116 2.81600 3.30072 3.38299 3.42334 3.81239 3.93742 4.14973 4.43054 4.54779 4.96258 5.07228 5.10999 5.22567 5.31154 5.36536 5.46724 5.60983 5.75305 5.89910 5.94961 6.00974 6.13188 6.20436 6.41007 6.42807 6.52702 6.62689 6.72030 6.87930 6.92972 7.10708 7.13378 7.34113 7.43551 7.71270 7.75819 8.03089 8.12815 8.18892 8.43999 8.98100 9.59245 11.06794 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.004358 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.884859 B = 6423.044166 C = 6624.870960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.299 6.299 3 C 0.354 3.646 4 N -0.584 5.584 5 C 0.330 3.670 6 N -0.562 5.562 7 C 0.377 3.623 8 N -0.488 5.488 9 C 0.071 3.929 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.056 3.944 13 H 0.036 0.964 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.075 3.925 23 C -0.180 4.180 24 C -0.088 4.088 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.194 0.806 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -5.459 6.259 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.168 3.832 4 N -0.314 5.314 5 C 0.041 3.959 6 N -0.283 5.283 7 C 0.143 3.857 8 N -0.212 5.212 9 C -0.055 4.055 10 C -0.154 4.154 11 C -0.150 4.150 12 C 0.038 3.962 13 H 0.054 0.946 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.051 4.051 23 C -0.187 4.187 24 C -0.146 4.146 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.211 0.789 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.983 -5.461 6.282 17.140 hybrid contribution 0.070 0.784 -0.818 1.135 sum -14.913 -4.677 5.465 16.557 Atomic orbital electron populations 1.22897 0.77101 1.03022 1.02569 1.86230 1.22906 1.24044 1.87188 1.19815 0.88868 0.84858 0.89704 1.68062 1.41811 0.99175 1.22393 1.24377 0.88298 0.93494 0.89756 1.68682 1.06748 1.35178 1.17725 1.20122 0.91245 0.87133 0.87188 1.60164 1.02137 1.53209 1.05728 1.22045 0.97442 0.96497 0.89514 1.21700 0.92431 1.01624 0.99676 1.21678 1.03756 0.96844 0.92707 1.18694 0.86541 0.97343 0.93667 0.94559 1.21132 0.91703 1.35205 1.07219 0.92730 1.24911 0.96796 0.95543 0.96468 1.69892 1.01399 1.45268 1.36069 0.86561 0.78743 0.79604 0.83233 1.19852 1.21057 1.21030 1.22417 0.99980 0.95167 0.87490 1.20507 0.91210 0.97983 1.08984 1.20410 0.99746 0.92247 1.02220 0.88483 0.92229 0.92168 0.78907 0.93845 0.92501 0.92920 0.91830 0.88827 0.94800 0.93066 0.94225 0.92368 0.91481 0.91760 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.41 101.05 1.05 1.41 16 2 O -0.30 -3.85 9.74 -18.33 -0.18 -4.03 16 3 C 0.35 5.24 7.49 -16.79 -0.13 5.12 16 4 N -0.58 -8.36 9.38 -14.73 -0.14 -8.50 16 5 C 0.33 4.68 12.28 -92.23 -1.13 3.55 16 6 N -0.56 -9.55 9.91 -13.87 -0.14 -9.69 16 7 C 0.38 6.63 5.28 -154.73 -0.82 5.81 16 8 N -0.49 -9.22 3.64 -173.12 -0.63 -9.85 16 9 C 0.07 1.28 5.28 -3.84 -0.02 1.26 16 10 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 11 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 12 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 17 N -0.89 -24.83 11.36 55.43 0.63 -24.20 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.07 1.61 4.49 -3.83 -0.02 1.59 16 23 C -0.18 -2.87 5.95 -104.00 -0.62 -3.49 16 24 C -0.09 -1.25 9.63 36.00 0.35 -0.90 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 29 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 30 H 0.06 0.92 8.10 -51.92 -0.42 0.50 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.04 0.89 8.05 -51.93 -0.42 0.48 16 37 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 40 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -29.08 325.79 -8.92 -38.00 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.13 Total: -0.63 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.23 Total: -2.10 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.28 Total: -52.23 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.18 Total: -4.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.08 -8.92 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.430 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds