Wall clock time and date at job start Mon Mar 30 2020 02:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35545 * 117.00268 * 2 1
4 4 N 1.33032 * 120.46545 * 359.96854 * 3 2 1
5 5 C 1.31742 * 120.90979 * 180.02562 * 4 3 2
6 6 N 1.31752 * 121.89350 * 359.71579 * 5 4 3
7 7 C 1.33121 * 120.83091 * 0.58071 * 6 5 4
8 8 N 1.38612 * 120.49383 * 179.71099 * 7 6 5
9 9 C 1.46841 * 111.00219 * 62.42106 * 8 7 6
10 10 C 1.53035 * 109.52454 * 174.15786 * 9 8 7
11 11 C 1.53120 * 109.27595 * 59.17989 * 10 9 8
12 12 C 1.53113 * 109.16177 * 302.34574 * 11 10 9
13 13 H 1.08999 * 109.50530 * 297.71665 * 12 11 10
14 14 C 1.50699 * 109.53659 * 177.61713 * 12 11 10
15 15 H 1.08004 * 119.99896 * 240.09472 * 14 12 11
16 16 C 1.37876 * 120.00158 * 60.09906 * 14 12 11
17 17 N 1.31512 * 119.99719 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00130 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47093 * 119.99612 * 18 16 14
21 21 H 1.48498 * 109.47328 * 239.99826 * 18 16 14
22 22 C 1.46845 * 110.99800 * 298.21152 * 8 7 6
23 23 C 1.38883 * 120.46238 * 179.97438 * 3 2 1
24 24 C 1.50697 * 120.85809 * 359.97438 * 23 3 2
25 25 H 1.08999 * 109.47595 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47139 * 300.00571 * 1 2 3
27 27 H 1.09003 * 109.46781 * 60.00236 * 1 2 3
28 28 H 1.08006 * 119.05097 * 180.02562 * 5 4 3
29 29 H 1.08999 * 109.46656 * 294.17641 * 9 8 7
30 30 H 1.09007 * 109.46334 * 54.14104 * 9 8 7
31 31 H 1.09002 * 109.50358 * 179.11915 * 10 9 8
32 32 H 1.09001 * 109.50262 * 299.23601 * 10 9 8
33 33 H 1.09005 * 109.52238 * 182.43856 * 11 10 9
34 34 H 1.08998 * 109.52248 * 62.25047 * 11 10 9
35 35 H 0.96998 * 119.99850 * 180.02562 * 17 16 14
36 36 H 1.08991 * 109.46743 * 65.82425 * 22 8 7
37 37 H 1.09004 * 109.45281 * 305.85140 * 22 8 7
38 38 H 1.09005 * 109.47100 * 274.41516 * 24 23 3
39 39 H 1.08994 * 109.47625 * 34.41507 * 24 23 3
40 40 H 1.09004 * 109.47497 * 154.41779 * 24 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0444 1.2077 0.0000
4 7 1.3290 2.3293 -0.0006
5 6 1.9180 3.5077 -0.0011
6 7 3.2298 3.6302 0.0045
7 6 4.0154 2.5555 -0.0006
8 7 5.3948 2.6926 -0.0006
9 6 5.8563 3.3708 1.2172
10 6 7.3862 3.3748 1.2519
11 6 7.9181 4.0965 0.0106
12 6 7.3837 3.3995 -1.2436
13 1 7.7501 2.3734 -1.2737
14 6 7.8545 4.1381 -2.4699
15 1 7.1347 4.5609 -3.1552
16 6 9.2041 4.2740 -2.7171
17 7 10.0805 3.7594 -1.8824
18 14 9.7877 5.1901 -4.2368
19 1 8.6123 5.6705 -5.0070
20 1 10.6181 6.3509 -3.8266
21 1 10.5965 4.2779 -5.0847
22 6 5.8538 3.3948 -1.2059
23 6 3.4307 1.2915 0.0005
24 6 4.2803 0.0469 0.0017
25 1 -0.3634 -1.0276 0.0005
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 1.3080 4.3989 -0.0012
29 1 5.4903 4.3975 1.2222
30 1 5.4745 2.8452 2.0926
31 1 7.7286 3.8920 2.1482
32 1 7.7527 2.3482 1.2611
33 1 9.0077 4.0639 0.0092
34 1 7.5838 5.1339 0.0212
35 1 11.0300 3.8553 -2.0562
36 1 5.4877 4.4213 -1.1897
37 1 5.4702 2.8864 -2.0905
38 1 4.4194 -0.2972 1.0266
39 1 3.7853 -0.7316 -0.5788
40 1 5.2509 0.2690 -0.4418
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166742365.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:43
Heat of formation + Delta-G solvation = 12.426335 kcal
Electronic energy + Delta-G solvation = -21974.303605 eV
Core-core repulsion = 18789.516860 eV
Total energy + Delta-G solvation = -3184.786744 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.153 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.28646 -38.98608 -37.73777 -34.43367 -33.06281 -32.49899 -30.78984 -29.92651
-27.82744 -26.96525 -24.99041 -24.22911 -22.73817 -21.87380 -21.41874 -18.92296
-18.52392 -17.74415 -16.43171 -16.29758 -15.43000 -15.13398 -14.74218 -14.41404
-14.23362 -14.06328 -13.77808 -13.39265 -12.74970 -12.67045 -12.53484 -12.45506
-12.25092 -11.89234 -11.80120 -11.60512 -10.97075 -10.77922 -10.74888 -10.69649
-10.15094 -10.04490 -9.77280 -9.52280 -9.45663 -9.05119 -8.79744 -8.66802
-8.35421 -8.10293 -5.99344 -4.05265 1.02197 1.21116 2.81600 3.30072
3.38299 3.42334 3.81239 3.93742 4.14973 4.43054 4.54779 4.96258
5.07228 5.10999 5.22567 5.31154 5.36536 5.46724 5.60983 5.75305
5.89910 5.94961 6.00974 6.13188 6.20436 6.41007 6.42807 6.52702
6.62689 6.72030 6.87930 6.92972 7.10708 7.13378 7.34113 7.43551
7.71270 7.75819 8.03089 8.12815 8.18892 8.43999 8.98100 9.59245
11.06794
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.027314 B = 0.004358 C = 0.004225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.884859 B = 6423.044166 C = 6624.870960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.299 6.299
3 C 0.354 3.646
4 N -0.584 5.584
5 C 0.330 3.670
6 N -0.562 5.562
7 C 0.377 3.623
8 N -0.488 5.488
9 C 0.071 3.929
10 C -0.116 4.116
11 C -0.112 4.112
12 C 0.056 3.944
13 H 0.036 0.964
14 C -0.514 4.514
15 H 0.054 0.946
16 C 0.064 3.936
17 N -0.888 5.888
18 Si 0.890 3.110
19 H -0.274 1.274
20 H -0.284 1.284
21 H -0.284 1.284
22 C 0.075 3.925
23 C -0.180 4.180
24 C -0.088 4.088
25 H 0.097 0.903
26 H 0.059 0.941
27 H 0.060 0.940
28 H 0.194 0.806
29 H 0.043 0.957
30 H 0.056 0.944
31 H 0.052 0.948
32 H 0.063 0.937
33 H 0.093 0.907
34 H 0.033 0.967
35 H 0.259 0.741
36 H 0.039 0.961
37 H 0.058 0.942
38 H 0.067 0.933
39 H 0.063 0.937
40 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.947 -5.459 6.259 17.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.204 6.204
3 C 0.168 3.832
4 N -0.314 5.314
5 C 0.041 3.959
6 N -0.283 5.283
7 C 0.143 3.857
8 N -0.212 5.212
9 C -0.055 4.055
10 C -0.154 4.154
11 C -0.150 4.150
12 C 0.038 3.962
13 H 0.054 0.946
14 C -0.553 4.553
15 H 0.073 0.927
16 C -0.137 4.137
17 N -0.526 5.526
18 Si 0.719 3.281
19 H -0.199 1.199
20 H -0.211 1.211
21 H -0.210 1.210
22 C -0.051 4.051
23 C -0.187 4.187
24 C -0.146 4.146
25 H 0.115 0.885
26 H 0.078 0.922
27 H 0.078 0.922
28 H 0.211 0.789
29 H 0.062 0.938
30 H 0.075 0.925
31 H 0.071 0.929
32 H 0.082 0.918
33 H 0.112 0.888
34 H 0.052 0.948
35 H 0.069 0.931
36 H 0.058 0.942
37 H 0.076 0.924
38 H 0.085 0.915
39 H 0.082 0.918
40 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -14.983 -5.461 6.282 17.140
hybrid contribution 0.070 0.784 -0.818 1.135
sum -14.913 -4.677 5.465 16.557
Atomic orbital electron populations
1.22897 0.77101 1.03022 1.02569 1.86230 1.22906 1.24044 1.87188
1.19815 0.88868 0.84858 0.89704 1.68062 1.41811 0.99175 1.22393
1.24377 0.88298 0.93494 0.89756 1.68682 1.06748 1.35178 1.17725
1.20122 0.91245 0.87133 0.87188 1.60164 1.02137 1.53209 1.05728
1.22045 0.97442 0.96497 0.89514 1.21700 0.92431 1.01624 0.99676
1.21678 1.03756 0.96844 0.92707 1.18694 0.86541 0.97343 0.93667
0.94559 1.21132 0.91703 1.35205 1.07219 0.92730 1.24911 0.96796
0.95543 0.96468 1.69892 1.01399 1.45268 1.36069 0.86561 0.78743
0.79604 0.83233 1.19852 1.21057 1.21030 1.22417 0.99980 0.95167
0.87490 1.20507 0.91210 0.97983 1.08984 1.20410 0.99746 0.92247
1.02220 0.88483 0.92229 0.92168 0.78907 0.93845 0.92501 0.92920
0.91830 0.88827 0.94800 0.93066 0.94225 0.92368 0.91481 0.91760
0.89268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.36 10.41 101.05 1.05 1.41 16
2 O -0.30 -3.85 9.74 -18.33 -0.18 -4.03 16
3 C 0.35 5.24 7.49 -16.79 -0.13 5.12 16
4 N -0.58 -8.36 9.38 -14.73 -0.14 -8.50 16
5 C 0.33 4.68 12.28 -92.23 -1.13 3.55 16
6 N -0.56 -9.55 9.91 -13.87 -0.14 -9.69 16
7 C 0.38 6.63 5.28 -154.73 -0.82 5.81 16
8 N -0.49 -9.22 3.64 -173.12 -0.63 -9.85 16
9 C 0.07 1.28 5.28 -3.84 -0.02 1.26 16
10 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16
11 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16
12 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16
13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
14 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16
15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16
16 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16
17 N -0.89 -24.83 11.36 55.43 0.63 -24.20 16
18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16
19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
22 C 0.07 1.61 4.49 -3.83 -0.02 1.59 16
23 C -0.18 -2.87 5.95 -104.00 -0.62 -3.49 16
24 C -0.09 -1.25 9.63 36.00 0.35 -0.90 16
25 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16
26 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16
27 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16
28 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16
29 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16
30 H 0.06 0.92 8.10 -51.92 -0.42 0.50 16
31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16
34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
36 H 0.04 0.89 8.05 -51.93 -0.42 0.48 16
37 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16
38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
39 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16
40 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16
LS Contribution 325.79 15.07 4.91 4.91
Total: -1.00 -29.08 325.79 -8.92 -38.00
By element:
Atomic # 1 Polarization: 5.50 SS G_CDS: -6.13 Total: -0.63 kcal
Atomic # 6 Polarization: 0.12 SS G_CDS: -2.23 Total: -2.10 kcal
Atomic # 7 Polarization: -51.96 SS G_CDS: -0.28 Total: -52.23 kcal
Atomic # 8 Polarization: -3.85 SS G_CDS: -0.18 Total: -4.03 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -29.08 -8.92 -38.00 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166742365.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.430 kcal
(2) G-P(sol) polarization free energy of solvation -29.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.347 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.426 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds