Wall clock time and date at job start Mon Mar 30 2020 02:27:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35545 * 117.00268 * 2 1
4 4 N 1.33032 * 120.46545 * 359.96854 * 3 2 1
5 5 C 1.31742 * 120.90979 * 180.02562 * 4 3 2
6 6 N 1.31752 * 121.89350 * 359.71579 * 5 4 3
7 7 C 1.33121 * 120.83091 * 0.58071 * 6 5 4
8 8 N 1.38612 * 120.49383 * 179.71099 * 7 6 5
9 9 C 1.46841 * 111.00219 * 62.42106 * 8 7 6
10 10 C 1.53035 * 109.52454 * 174.15786 * 9 8 7
11 11 C 1.53120 * 109.27595 * 59.17989 * 10 9 8
12 12 C 1.53113 * 109.16177 * 302.34574 * 11 10 9
13 13 H 1.08999 * 109.50530 * 297.71665 * 12 11 10
14 14 C 1.50699 * 109.53659 * 177.61713 * 12 11 10
15 15 H 1.08004 * 119.99896 * 240.09472 * 14 12 11
16 16 C 1.37876 * 120.00158 * 60.09906 * 14 12 11
17 17 N 1.31512 * 119.99719 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00130 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47093 * 119.99612 * 18 16 14
21 21 H 1.48498 * 109.47328 * 239.99826 * 18 16 14
22 22 C 1.46845 * 110.99800 * 298.21152 * 8 7 6
23 23 C 1.38883 * 120.46238 * 179.97438 * 3 2 1
24 24 C 1.50697 * 120.85809 * 359.97438 * 23 3 2
25 25 H 1.08999 * 109.47595 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47139 * 300.00571 * 1 2 3
27 27 H 1.09003 * 109.46781 * 60.00236 * 1 2 3
28 28 H 1.08006 * 119.05097 * 180.02562 * 5 4 3
29 29 H 1.08999 * 109.46656 * 294.17641 * 9 8 7
30 30 H 1.09007 * 109.46334 * 54.14104 * 9 8 7
31 31 H 1.09002 * 109.50358 * 179.11915 * 10 9 8
32 32 H 1.09001 * 109.50262 * 299.23601 * 10 9 8
33 33 H 1.09005 * 109.52238 * 182.43856 * 11 10 9
34 34 H 1.08998 * 109.52248 * 62.25047 * 11 10 9
35 35 H 0.96998 * 119.99850 * 180.02562 * 17 16 14
36 36 H 1.08991 * 109.46743 * 65.82425 * 22 8 7
37 37 H 1.09004 * 109.45281 * 305.85140 * 22 8 7
38 38 H 1.09005 * 109.47100 * 274.41516 * 24 23 3
39 39 H 1.08994 * 109.47625 * 34.41507 * 24 23 3
40 40 H 1.09004 * 109.47497 * 154.41779 * 24 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0444 1.2077 0.0000
4 7 1.3290 2.3293 -0.0006
5 6 1.9180 3.5077 -0.0011
6 7 3.2298 3.6302 0.0045
7 6 4.0154 2.5555 -0.0006
8 7 5.3948 2.6926 -0.0006
9 6 5.8563 3.3708 1.2172
10 6 7.3862 3.3748 1.2519
11 6 7.9181 4.0965 0.0106
12 6 7.3837 3.3995 -1.2436
13 1 7.7501 2.3734 -1.2737
14 6 7.8545 4.1381 -2.4699
15 1 7.1347 4.5609 -3.1552
16 6 9.2041 4.2740 -2.7171
17 7 10.0805 3.7594 -1.8824
18 14 9.7877 5.1901 -4.2368
19 1 8.6123 5.6705 -5.0070
20 1 10.6181 6.3509 -3.8266
21 1 10.5965 4.2779 -5.0847
22 6 5.8538 3.3948 -1.2059
23 6 3.4307 1.2915 0.0005
24 6 4.2803 0.0469 0.0017
25 1 -0.3634 -1.0276 0.0005
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 1.3080 4.3989 -0.0012
29 1 5.4903 4.3975 1.2222
30 1 5.4745 2.8452 2.0926
31 1 7.7286 3.8920 2.1482
32 1 7.7527 2.3482 1.2611
33 1 9.0077 4.0639 0.0092
34 1 7.5838 5.1339 0.0212
35 1 11.0300 3.8553 -2.0562
36 1 5.4877 4.4213 -1.1897
37 1 5.4702 2.8864 -2.0905
38 1 4.4194 -0.2972 1.0266
39 1 3.7853 -0.7316 -0.5788
40 1 5.2509 0.2690 -0.4418
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166742365.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:42
Heat of formation + Delta-G solvation = -4.872107 kcal
Electronic energy + Delta-G solvation = -21975.053721 eV
Core-core repulsion = 18789.516860 eV
Total energy + Delta-G solvation = -3185.536861 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.153 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.47385 -40.26479 -39.04231 -36.04909 -34.47231 -33.96973 -32.27220 -31.76302
-28.71889 -28.08410 -26.97224 -25.64889 -23.92369 -23.36415 -23.01173 -20.58907
-19.66305 -19.10552 -18.29164 -17.32014 -16.99004 -16.41773 -16.20931 -15.96693
-15.40858 -15.26936 -15.06530 -14.93853 -14.39299 -14.36209 -14.10969 -13.82912
-13.42401 -13.16213 -12.87383 -12.86564 -12.70415 -12.61895 -12.49841 -11.92635
-11.87380 -11.79380 -11.44681 -11.13461 -10.99558 -10.70160 -10.46765 -10.37787
-9.85404 -9.65448 -8.08028 -6.21443 -0.18777 0.03514 1.41182 1.43405
1.54242 1.79499 2.42615 2.63993 2.65820 3.11800 3.19561 3.30794
3.81428 3.97762 4.08096 4.21347 4.32990 4.41271 4.41786 4.44652
4.57157 4.60222 4.70792 4.82283 4.83671 4.88120 4.94731 5.01945
5.05256 5.13211 5.33813 5.37714 5.50187 5.64461 5.78340 5.80537
6.02509 6.06109 6.15529 6.25252 6.40181 6.88418 7.01765 7.46114
8.96910
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.027314 B = 0.004358 C = 0.004225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.884859 B = 6423.044166 C = 6624.870960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.303 6.303
3 C 0.356 3.644
4 N -0.579 5.579
5 C 0.332 3.668
6 N -0.585 5.585
7 C 0.355 3.645
8 N -0.488 5.488
9 C 0.077 3.923
10 C -0.107 4.107
11 C -0.104 4.104
12 C 0.057 3.943
13 H 0.006 0.994
14 C -0.537 4.537
15 H 0.047 0.953
16 C 0.019 3.981
17 N -0.911 5.911
18 Si 0.952 3.048
19 H -0.271 1.271
20 H -0.279 1.279
21 H -0.279 1.279
22 C 0.095 3.905
23 C -0.190 4.190
24 C -0.082 4.082
25 H 0.129 0.871
26 H 0.063 0.937
27 H 0.060 0.940
28 H 0.230 0.770
29 H 0.037 0.963
30 H 0.081 0.919
31 H 0.078 0.922
32 H 0.060 0.940
33 H 0.065 0.935
34 H 0.023 0.977
35 H 0.261 0.739
36 H 0.026 0.974
37 H 0.047 0.953
38 H 0.080 0.920
39 H 0.076 0.924
40 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.708 -5.774 6.756 18.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.207 6.207
3 C 0.169 3.831
4 N -0.310 5.310
5 C 0.043 3.957
6 N -0.307 5.307
7 C 0.122 3.878
8 N -0.212 5.212
9 C -0.049 4.049
10 C -0.144 4.144
11 C -0.142 4.142
12 C 0.038 3.962
13 H 0.025 0.975
14 C -0.575 4.575
15 H 0.065 0.935
16 C -0.180 4.180
17 N -0.550 5.550
18 Si 0.778 3.222
19 H -0.196 1.196
20 H -0.205 1.205
21 H -0.205 1.205
22 C -0.031 4.031
23 C -0.197 4.197
24 C -0.140 4.140
25 H 0.147 0.853
26 H 0.081 0.919
27 H 0.078 0.922
28 H 0.246 0.754
29 H 0.055 0.945
30 H 0.099 0.901
31 H 0.096 0.904
32 H 0.079 0.921
33 H 0.083 0.917
34 H 0.042 0.958
35 H 0.071 0.929
36 H 0.045 0.955
37 H 0.066 0.934
38 H 0.098 0.902
39 H 0.095 0.905
40 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -16.766 -5.792 6.787 18.993
hybrid contribution 0.491 0.820 -0.962 1.356
sum -16.275 -4.972 5.825 17.987
Atomic orbital electron populations
1.23214 0.74936 1.05255 1.02716 1.86235 1.24983 1.22926 1.86594
1.19915 0.88712 0.85678 0.88776 1.68179 1.41473 0.99130 1.22173
1.25082 0.87679 0.94642 0.88258 1.68640 1.08013 1.35227 1.18808
1.20073 0.90498 0.88103 0.89118 1.60028 1.03750 1.52559 1.04845
1.22012 0.96385 0.96506 0.90019 1.21591 0.93279 1.01073 0.98499
1.21474 1.01895 0.96623 0.94212 1.18584 0.88570 0.95304 0.93737
0.97542 1.21451 0.92082 1.35731 1.08264 0.93477 1.25632 0.96889
0.96283 0.99174 1.70013 1.01608 1.45982 1.37402 0.85598 0.78198
0.78491 0.79902 1.19568 1.20477 1.20496 1.21964 0.97795 0.94550
0.88763 1.20630 0.92142 0.97793 1.09089 1.20368 0.98554 0.92003
1.03059 0.85309 0.91863 0.92171 0.75416 0.94462 0.90069 0.90369
0.92089 0.91676 0.95794 0.92928 0.95520 0.93446 0.90165 0.90542
0.91229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.50 10.41 113.37 1.18 1.68 16
2 O -0.30 -7.06 9.74 -88.50 -0.86 -7.92 16
3 C 0.36 9.88 7.49 84.67 0.63 10.51 16
4 N -0.58 -15.27 9.38 -313.04 -2.94 -18.21 16
5 C 0.33 8.74 12.28 180.91 2.22 10.96 16
6 N -0.58 -19.26 9.91 -197.78 -1.96 -21.22 16
7 C 0.36 12.27 5.28 133.01 0.70 12.97 16
8 N -0.49 -18.46 3.64 -701.62 -2.55 -21.01 16
9 C 0.08 2.69 5.28 86.33 0.46 3.15 16
10 C -0.11 -3.99 6.09 30.65 0.19 -3.80 16
11 C -0.10 -4.91 5.03 30.67 0.15 -4.76 16
12 C 0.06 2.89 2.26 -11.49 -0.03 2.87 16
13 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
14 C -0.54 -29.95 8.56 25.60 0.22 -29.73 16
15 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16
16 C 0.02 1.08 5.31 84.65 0.45 1.53 16
17 N -0.91 -52.09 11.36 21.45 0.24 -51.84 16
18 Si 0.95 43.78 29.54 68.60 2.03 45.80 16
19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
22 C 0.10 4.24 4.49 86.33 0.39 4.63 16
23 C -0.19 -5.83 5.95 -19.46 -0.12 -5.94 16
24 C -0.08 -2.24 9.63 71.23 0.69 -1.55 16
25 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16
26 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16
27 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16
28 H 0.23 4.08 8.06 -2.91 -0.02 4.06 16
29 H 0.04 1.36 8.06 -2.39 -0.02 1.34 16
30 H 0.08 2.48 8.10 -2.38 -0.02 2.46 16
31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16
32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
33 H 0.06 3.45 6.16 -2.38 -0.01 3.44 16
34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16
36 H 0.03 1.23 8.05 -2.39 -0.02 1.22 16
37 H 0.05 2.16 8.10 -2.38 -0.02 2.14 16
38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16
39 H 0.08 1.86 7.76 -2.39 -0.02 1.84 16
40 H 0.07 2.17 7.43 -2.39 -0.02 2.16 16
Total: -1.00 -63.41 325.79 2.12 -61.29
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: 1.02 Total: 10.60 kcal
Atomic # 6 Polarization: -4.62 SS G_CDS: 7.14 Total: 2.51 kcal
Atomic # 7 Polarization: -105.08 SS G_CDS: -7.20 Total: -112.29 kcal
Atomic # 8 Polarization: -7.06 SS G_CDS: -0.86 Total: -7.92 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal
Total: -63.41 2.12 -61.29 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166742365.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.418 kcal
(2) G-P(sol) polarization free energy of solvation -63.407 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.990 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.872 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds